Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009281

Physical Location & Seq

Genomic Coordinates Forward (+)

36228405 .. 36232510

Gene Structure 4106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG143100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATATCTTCAAAACCAGATGGGTATCTAAAATCTTGGGATAGCTCTATTGATCTTGTTAATGTCCTGAAGCATGAGATTCGAGATGGGCAACTGAGCTTTAGAGGAAAAAGGGTACTTGAGCTGGGTTGCAGCTATGGCCTTCCAGGAATTTTTGCTTGTCTGAAGGGAGCGGGCACAGTGCACTTTCAAGACCTCAGTGCAGAAAGTATTAGATGCACAACAATACCAAATGTCCTTGCCAATCTTGAGCAAGCTCGAGATAGGCAGAGCCGACAGCCAGAGAGCCCCCTGACTCCATCAAGACAAACTGTGACCCAGTCGGTGCACTTTTATGCTGGTGACTGGGAAGAGCTTCCCACTGTCTTGTCTGTTGTGAGGAATGATGGGTTTGAAGTGACAGCAGGAATGAACCTGAGCTTCTCTGAGGAAGATTTTATGGAGGGTTGTAGCAGCAGCCAAGATGGAAGCATCTTGGGACAAGAATCTTCCTCAAGGCGATCAAGGAAGCTTTCAGGAAGTCGGGCGTGGGAGAGAGCGAGTGAGACCGAACAAGGAGAAGGTGGATATGATATTATCTTGATGACCGAGATCCCATATTCATTAACCTCATTGAAAAAGTTTTATGCACTCATAAAAAAGTGTTCAAGGCCACCATATGGTGTTGTATACTTGGCCACAAAAAGGAATTATGTTGGCTTTAACGGCGGTGCTCGGCACCTGAAAAGCCTGGTAGATGAAGAGGGAATTTTTGGTGCTCATCTAGTGAAGGAGATGGCGGACAGAGATGTATGGAAATTTTTTAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

270

Amino Acids

30.1

Weight (kDa)

6.54

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43320 AT2G43320
fragaria_vesca	FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150
malus_domestica	MD04G1039600.v1.1
prunus_persica	Prupe.1G190500_v2.0.a1 Prupe.1G190500_v2.0.a1
pyrus_communis	pycom04g03270
rosa_chinensis	RchiOBHm_Chr4g0407231
rosa_laevigata	RLG00000008737
rosa_multiflora	Rmu_sc0001860.1_g000012 Rmu_sc0004282.1_g000016
rosa_roxburghii	Rroxscaffold_5G00351820
rosa_rugosa	Rorug04G0078400
rosa_samantha	Rh4AG143100 Rh4BG140600 Rh4CG149500 Rh4DG136900
rosa_wichuraiana	Rw4G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	717
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	669
AciI	CCGC	3 cut(s)	173, 708, 779
AclWI	GGATC	1 cut(s)	586
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	3 cut(s)	150, 747, 797
AcuI	CTGAAG	2 cut(s)	89, 185
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	659, 684
AgsI	TTSAA	5 cut(s)	12, 191, 395, 616, 648
AjnI	CCWGG	2 cut(s)	145, 729
AluBI	AGCT	8 cut(s)	45, 99, 124, 135, 257, 355, 420, 511
AluI	AGCT	8 cut(s)	45, 99, 124, 135, 257, 355, 420, 511
Alw21I	GWGCWC	4 cut(s)	186, 330, 715, 760
Alw26I	GTCTC	1 cut(s)	539
Alw44I	GTGCAC	2 cut(s)	182, 326
AlwI	GGATC	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	3 cut(s)	139, 650, 675
ApaLI	GTGCAC	2 cut(s)	182, 326
ApeKI	GCWGC	3 cut(s)	132, 453, 456
ApoI	RAATTY	3 cut(s)	150, 747, 797
Asp700I	GAANNNNTTC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	258
BaeGI	GKGCMC	3 cut(s)	179, 186, 330
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	717
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	4 cut(s)	186, 330, 715, 760
BbvI	GCAGC	3 cut(s)	144, 465, 468
BccI	CCATC	6 cut(s)	14, 80, 307, 380, 458, 769
BceAI	ACGGC	1 cut(s)	721
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	2 cut(s)	147, 731
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	764
BisI	GCNGC	3 cut(s)	133, 454, 457
BlsI	GCNGC	3 cut(s)	134, 455, 458
Bme1390I	CCNGG	2 cut(s)	147, 731
BmeT110I	CYCGRG	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	719
BmrFI	CCNGG	2 cut(s)	147, 731
BmrI	ACTGGG	2 cut(s)	313, 355
BmsI	GCATC	2 cut(s)	206, 480
BmuI	ACTGGG	2 cut(s)	313, 355
Bpu10I	CCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	3 cut(s)	140, 269, 478
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 684
Bse1I	ACTGG	2 cut(s)	319, 350
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	147, 731
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	659, 684
BseMII	CTCAG	4 cut(s)	86, 211, 407, 417
BseNI	ACTGG	2 cut(s)	319, 350
BseSI	GKGCMC	3 cut(s)	179, 186, 330
BseXI	GCAGC	3 cut(s)	144, 465, 468
BseYI	CCCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	141, 652, 677
BshNI	GGYRCC	1 cut(s)	717
BsiHKAI	GWGCWC	4 cut(s)	186, 330, 715, 760
BsiHKCI	CYCGRG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	2 cut(s)	659, 684
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	141, 652, 677
Bso31I	GGTCTC	1 cut(s)	539
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	6 cut(s)	179, 186, 290, 330, 715, 760
Bsp143I	GATC	3 cut(s)	52, 500, 591
BspACI	CCGC	3 cut(s)	173, 708, 779
BspANI	GGCC	3 cut(s)	141, 652, 677
BspCNI	CTCAG	4 cut(s)	87, 210, 408, 418
BspLI	GGNNCC	1 cut(s)	719
BspPI	GGATC	1 cut(s)	586
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	717
BspTNI	GGTCTC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	319, 350
BssMI	GATC	3 cut(s)	52, 500, 591
BssNAI	GTATAC	1 cut(s)	670
Bst1107I	GTATAC	1 cut(s)	670
Bst2UI	CCWGG	2 cut(s)	147, 731
Bst4CI	ACNGT	3 cut(s)	181, 313, 364
Bst6I	CTCTTC	2 cut(s)	345, 735
BstC8I	GCNNGC	2 cut(s)	175, 255
BstDEI	CTNAG	4 cut(s)	95, 197, 416, 426
BstKTI	GATC	3 cut(s)	55, 503, 594
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	3 cut(s)	52, 500, 591
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 705
BstNI	CCWGG	2 cut(s)	147, 731
BstSCI	CCNGG	2 cut(s)	145, 729
BstSLI	GKGCMC	3 cut(s)	179, 186, 330
BstV1I	GCAGC	3 cut(s)	144, 465, 468
BstX2I	RGATCY	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	591
BstZ17I	GTATAC	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	141, 652, 677
BtsIMutI	CAGTG	3 cut(s)	186, 205, 360
Cac8I	GCNNGC	2 cut(s)	175, 255
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	74
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	4 cut(s)	95, 197, 416, 426
DpnI	GATC	3 cut(s)	54, 502, 593
DpnII	GATC	3 cut(s)	52, 500, 591
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	2 cut(s)	345, 735
EarI	CTCTTC	2 cut(s)	345, 735
EciI	GGCGGA	1 cut(s)	794
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	89, 185
Eco88I	CYCGRG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	145, 729
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	1 cut(s)	77
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	3 cut(s)	133, 454, 457
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	133, 454, 457
FspBI	CTAG	1 cut(s)	764
GluI	GCNGC	3 cut(s)	133, 454, 457
GsaI	CCCAGC	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	141, 652, 677
Hin1II	CATG	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	79, 295, 485
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	184, 328, 670
Hpy188I	TCNGA	2 cut(s)	165, 427
Hpy188III	TCNNGA	8 cut(s)	67, 83, 191, 248, 260, 303, 516, 580
Hpy8I	GTNNAC	3 cut(s)	184, 328, 670
HpyAV	CCTTC	4 cut(s)	152, 160, 554, 763
HpyCH4III	ACNGT	3 cut(s)	181, 313, 364
HpyCH4V	TGCA	6 cut(s)	132, 184, 203, 219, 328, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 705
HpyF3I	CTNAG	4 cut(s)	95, 197, 416, 426
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	52, 500, 591
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	3 cut(s)	144, 465, 468
LweI	GCATC	2 cut(s)	206, 480
MaeI	CTAG	1 cut(s)	764
MaeIII	GTNAC	3 cut(s)	313, 341, 397
MalI	GATC	3 cut(s)	54, 502, 593
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	3 cut(s)	52, 500, 591
MboII	GAAGA	4 cut(s)	362, 443, 480, 752
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	6 cut(s)	179, 186, 290, 330, 715, 760
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	4 cut(s)	150, 688, 747, 797
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	8 cut(s)	98, 206, 372, 421, 436, 502, 619, 736
Mox20I	TGGCCA	1 cut(s)	677
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	4 cut(s)	60, 605, 702, 804
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	677
MspR9I	CCNGG	2 cut(s)	147, 731
MvaI	CCWGG	2 cut(s)	147, 731
MwoI	GCNNNNNNNGC	2 cut(s)	138, 705
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	3 cut(s)	52, 500, 591
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	719
NmeAIII	GCCGAG	1 cut(s)	694
NmuCI	GTSAC	3 cut(s)	313, 341, 397
PaeR7I	CTCGAG	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	79, 485
PflFI	GACNNNGTC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	134, 455, 458
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	145, 729
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	2 cut(s)	145, 729
PspN4I	GGNNCC	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	591
PsyI	GACNNNGTC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	4 cut(s)	60, 605, 702, 804
SatI	GCNGC	3 cut(s)	133, 454, 457
Sau3AI	GATC	3 cut(s)	52, 500, 591
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	147, 731
SduI	GDGCHC	6 cut(s)	179, 186, 290, 330, 715, 760
SfaNI	GCATC	2 cut(s)	206, 480
Sfr274I	CTCGAG	1 cut(s)	258
SlaI	CTCGAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	4 cut(s)	119, 248, 258, 493
SmoI	CTYRAG	4 cut(s)	119, 248, 258, 493
Sse9I	AATT	4 cut(s)	150, 688, 747, 797
SsiI	CCGC	3 cut(s)	173, 708, 779
SspMI	CTAG	1 cut(s)	764
StyD4I	CCNGG	2 cut(s)	145, 729
TaaI	ACNGT	3 cut(s)	181, 313, 364
TaqI	TCGA	2 cut(s)	82, 259
TaqII	GACCGA	2 cut(s)	563, 602
TasI	AATT	4 cut(s)	150, 688, 747, 797
TfiI	GAWTC	2 cut(s)	79, 485
Tru1I	TTAA	4 cut(s)	60, 605, 702, 804
Tru9I	TTAA	4 cut(s)	60, 605, 702, 804
TscAI	CASTG	3 cut(s)	186, 205, 367
TseFI	GTSAC	3 cut(s)	313, 341, 397
TseI	GCWGC	3 cut(s)	132, 453, 456
Tsp45I	GTSAC	3 cut(s)	313, 341, 397
TspDTI	ATGAA	3 cut(s)	425, 591, 753
TspRI	CASTG	3 cut(s)	186, 205, 367
Tth111I	GACNNNGTC	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	659
VneI	GTGCAC	2 cut(s)	182, 326
XapI	RAATTY	3 cut(s)	150, 747, 797
XhoI	CTCGAG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.