Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009281

Physical Location & Seq

Genomic Coordinates Forward (+)

14955134 .. 14958945

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11150.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCGTGCACCATCATTACTTTCACAGTGCTTGCCGGGCTTGGTGCCTCATGACAAAGCAACTTCCAGCTTGTCCTCTATTTCTGACAGAGAATCACATCTTTCTTCACCAGCTGTCGAGATTCTCCCTTCCAAGTCTGCTCACCCATACAAGCATGCCGGCGAGAATATTGACTTGCAAGGACTCAATGCTTTGAAGGGAAGAGTCAGTGTTGCTGATATCATCGGCTCCAATGGTTCAGAAATGATATCTTCAAAACCAGATGGGTATCTAAAATCTTGGGATAACTCTATTGATCTTGTTAATGTCCTGAACCATGAGATTCGAGATGGTCAACTGAGCTTTAGAGGGAAAAGGGTACTCGAGCTGGGGTGCAGCTATGGCCTTCCAGGAATTTTTGCTTGTTTGAAGGGAGCAGGCACAGTGCACTTTCAAGACCTCAATGCAGAAAGTATAAGATGCACAACCATACCAAATGTCCTTGCCAATCTAGAGCAAGCTCGAGATAGGCAGAGCCGACAGCCCGAGAGCCCCCTGACTCCATCAAGACAAACTGTGACCCAGTCAGTGCACTTTTATGCTGGTGACTGGGAAGAGCTTCCCACTGTCTTGTCTGTTGTGAGAAATGATGGGTTTGAAGTGACTGCAGGAATGAACCTGAGCTTCTCTGAGGAGGATTTTATGGACGGCTGTAGCAGCCAAGATGGAAGCATCTTGGGACAAGAATCTTCCCCGAGACGATCAAGGAAGCTTTCAGGAAGCCGGGCCTGGGAGAGGGCGAGCGAGACCGAACAAGGAGGTGGATATGATATTATCTTGATGACCGAGATCCCATATTCATTAACCTCATTGAAAAAGCTTTACACACTCATAAAAAAGTGTTCGAGGCCACCATATGGTGTGGTATACTTGGCCACAAAAAGGAATTATGTCGGCTTTAACGGTGGTGCTCGGCATCTGAAAAGTCTGGTAGATGAAGAGGGGATTTTTGGTGCTCATCTAGTGAAGGAGATGGCGGACAGAGATGTATGGAAATTTTTTGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

350

Amino Acids

38.32

Weight (kDa)

6.52

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43320 AT2G43320
fragaria_vesca	FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150
malus_domestica	MD04G1039600.v1.1
prunus_persica	Prupe.1G190500_v2.0.a1 Prupe.1G190500_v2.0.a1
pyrus_communis	pycom04g03270
rosa_chinensis	RchiOBHm_Chr4g0407231
rosa_laevigata	RLG00000008737
rosa_multiflora	Rmu_sc0001860.1_g000012 Rmu_sc0004282.1_g000016
rosa_roxburghii	Rroxscaffold_5G00351820
rosa_rugosa	Rorug04G0078400
rosa_samantha	Rh4AG143100 Rh4BG140600 Rh4CG149500 Rh4DG136900
rosa_wichuraiana	Rw4G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	896
AccI	GTMKAC	1 cut(s)	906
AciI	CCGC	1 cut(s)	1016
AclWI	GGATC	1 cut(s)	823
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	2 cut(s)	393, 1034
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	4 cut(s)	769, 774, 896, 921
AgsI	TTSAA	6 cut(s)	196, 255, 409, 434, 638, 853
AjnI	CCWGG	2 cut(s)	388, 767
Alw21I	GWGCWC	5 cut(s)	10, 429, 573, 952, 997
Alw26I	GTCTC	2 cut(s)	730, 779
Alw44I	GTGCAC	3 cut(s)	6, 425, 569
AlwI	GGATC	1 cut(s)	823
Ama87I	CYCGRG	4 cut(s)	362, 501, 524, 733
AoxI	GGCC	4 cut(s)	382, 765, 887, 912
ApaLI	GTGCAC	3 cut(s)	6, 425, 569
ApeKI	GCWGC	2 cut(s)	375, 696
ApoI	RAATTY	2 cut(s)	393, 1034
Asp700I	GAANNNNTTC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	765
AsuC2I	CCSGG	2 cut(s)	36, 764
AsuHPI	GGTGA	3 cut(s)	99, 134, 596
AvaI	CYCGRG	4 cut(s)	362, 501, 524, 733
BaeGI	GKGCMC	3 cut(s)	10, 429, 573
BalI	TGGCCA	1 cut(s)	914
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	5 cut(s)	10, 429, 573, 952, 997
BbvI	GCAGC	2 cut(s)	387, 708
BccI	CCATC	7 cut(s)	19, 257, 323, 550, 623, 698, 1006
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	2 cut(s)	390, 769
BcnI	CCSGG	2 cut(s)	36, 764
BcoDI	GTCTC	2 cut(s)	730, 779
BfaI	CTAG	2 cut(s)	491, 1001
BfmI	CTRYAG	2 cut(s)	645, 691
BisI	GCNGC	2 cut(s)	376, 697
BlsI	GCNGC	2 cut(s)	377, 698
Bme1390I	CCNGG	4 cut(s)	36, 390, 764, 769
BmeT110I	CYCGRG	4 cut(s)	362, 501, 524, 733
BmgT120I	GGNCC	1 cut(s)	765
BmiI	GGNNCC	2 cut(s)	45, 229
BmrFI	CCNGG	4 cut(s)	36, 390, 764, 769
BmrI	ACTGGG	2 cut(s)	556, 598
BmsI	GCATC	3 cut(s)	449, 720, 964
BmuI	ACTGGG	2 cut(s)	556, 598
Bpu10I	CCTNAGC	1 cut(s)	659
BpuMI	CCSGG	2 cut(s)	36, 764
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	1 cut(s)	768
Bsc4I	CCNNNNNNNGG	4 cut(s)	769, 774, 896, 921
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	562, 593
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	390, 769
BseDI	CCNNGG	1 cut(s)	768
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	4 cut(s)	769, 774, 896, 921
BseMII	CTCAG	3 cut(s)	329, 650, 660
BseNI	ACTGG	2 cut(s)	562, 593
BseRI	GAGGAG	1 cut(s)	686
BseSI	GKGCMC	3 cut(s)	10, 429, 573
BseXI	GCAGC	2 cut(s)	387, 708
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	4 cut(s)	384, 767, 889, 914
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	5 cut(s)	10, 429, 573, 952, 997
BsiHKCI	CYCGRG	4 cut(s)	362, 501, 524, 733
BsiSI	CCGG	3 cut(s)	35, 159, 763
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	4 cut(s)	769, 774, 896, 921
BsmAI	GTCTC	2 cut(s)	730, 779
BsmBI	CGTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	4 cut(s)	384, 767, 889, 914
Bso31I	GGTCTC	1 cut(s)	779
BsoBI	CYCGRG	4 cut(s)	362, 501, 524, 733
Bsp1286I	GDGCHC	6 cut(s)	10, 429, 533, 573, 952, 997
Bsp143I	GATC	3 cut(s)	295, 740, 828
BspACI	CCGC	1 cut(s)	1016
BspANI	GGCC	4 cut(s)	384, 767, 889, 914
BspCNI	CTCAG	3 cut(s)	330, 651, 661
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	45, 229
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	1 cut(s)	823
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	779
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	562, 593
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	768
BssMI	GATC	3 cut(s)	295, 740, 828
BssNAI	GTATAC	1 cut(s)	907
Bst1107I	GTATAC	1 cut(s)	907
Bst2UI	CCWGG	2 cut(s)	390, 769
Bst4CI	ACNGT	5 cut(s)	27, 424, 556, 607, 944
Bst6I	CTCTTC	3 cut(s)	196, 588, 972
BstC8I	GCNNGC	7 cut(s)	6, 32, 156, 160, 418, 498, 781
BstDEI	CTNAG	3 cut(s)	338, 659, 669
BstENI	CCTNNNNNAGG	1 cut(s)	772
BstKTI	GATC	3 cut(s)	298, 743, 831
BstMAI	GTCTC	2 cut(s)	730, 779
BstMBI	GATC	3 cut(s)	295, 740, 828
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 381, 696
BstNI	CCWGG	2 cut(s)	390, 769
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	4 cut(s)	34, 388, 762, 767
BstSFI	CTRYAG	2 cut(s)	645, 691
BstSLI	GKGCMC	3 cut(s)	10, 429, 573
BstV1I	GCAGC	2 cut(s)	387, 708
BstX2I	RGATCY	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	828
BstZ17I	GTATAC	1 cut(s)	907
BsuRI	GGCC	4 cut(s)	384, 767, 889, 914
BtsIMutI	CAGTG	5 cut(s)	32, 214, 429, 573, 603
Cac8I	GCNNGC	7 cut(s)	6, 32, 156, 160, 418, 498, 781
CciI	TCATGA	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	765
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	3 cut(s)	50, 155, 317
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	3 cut(s)	338, 659, 669
DpnI	GATC	3 cut(s)	297, 742, 830
DpnII	GATC	3 cut(s)	295, 740, 828
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	3 cut(s)	196, 588, 972
EarI	CTCTTC	3 cut(s)	196, 588, 972
EciI	GGCGGA	1 cut(s)	1031
Eco24I	GRGCYC	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	779
Eco32I	GATATC	2 cut(s)	220, 249
Eco88I	CYCGRG	4 cut(s)	362, 501, 524, 733
EcoNI	CCTNNNNNAGG	1 cut(s)	772
EcoRII	CCWGG	2 cut(s)	388, 767
EcoRV	GATATC	2 cut(s)	220, 249
EcoT38I	GRGCYC	1 cut(s)	533
Esp3I	CGTCTC	1 cut(s)	730
FaeI	CATG	3 cut(s)	53, 158, 320
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	3 cut(s)	49, 154, 316
FauNDI	CATATG	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	906
Fnu4HI	GCNGC	2 cut(s)	376, 697
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	376, 697
FspBI	CTAG	2 cut(s)	491, 1001
GluI	GCNGC	2 cut(s)	376, 697
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	4 cut(s)	384, 767, 889, 914
HapII	CCGG	3 cut(s)	35, 159, 763
Hin1II	CATG	3 cut(s)	53, 158, 320
HincII	GTYRAC	1 cut(s)	335
HindII	GTYRAC	1 cut(s)	335
HindIII	AAGCTT	2 cut(s)	749, 857
HinfI	GANTC	7 cut(s)	92, 121, 183, 204, 322, 538, 725
HpaII	CCGG	3 cut(s)	35, 159, 763
HphI	GGTGA	3 cut(s)	99, 134, 596
Hpy166II	GTNNAC	5 cut(s)	8, 335, 427, 571, 907
Hpy188I	TCNGA	4 cut(s)	85, 241, 670, 960
Hpy8I	GTNNAC	5 cut(s)	8, 335, 427, 571, 907
HpyAV	CCTTC	5 cut(s)	138, 190, 395, 403, 1000
HpyCH4III	ACNGT	5 cut(s)	27, 424, 556, 607, 944
HpyCH4V	TGCA	8 cut(s)	8, 178, 375, 427, 446, 462, 571, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 381, 696
HpyF3I	CTNAG	3 cut(s)	338, 659, 669
Hsp92II	CATG	3 cut(s)	53, 158, 320
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	295, 740, 828
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	2 cut(s)	233, 413
Lsp1109I	GCAGC	2 cut(s)	387, 708
LweI	GCATC	3 cut(s)	449, 720, 964
MaeI	CTAG	2 cut(s)	491, 1001
MaeIII	GTNAC	3 cut(s)	556, 584, 640
MalI	GATC	3 cut(s)	297, 742, 830
MboI	GATC	3 cut(s)	295, 740, 828
MboII	GAAGA	6 cut(s)	96, 213, 243, 605, 720, 989
MflI	RGATCY	1 cut(s)	828
MhlI	GDGCHC	6 cut(s)	10, 429, 533, 573, 952, 997
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	3 cut(s)	393, 925, 1034
MluNI	TGGCCA	1 cut(s)	914
MlyI	GAGTC	3 cut(s)	177, 213, 532
Mox20I	TGGCCA	1 cut(s)	914
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	3 cut(s)	303, 842, 939
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	914
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	3 cut(s)	35, 159, 763
MspR9I	CCNGG	4 cut(s)	36, 390, 764, 769
MvaI	CCWGG	2 cut(s)	390, 769
MwoI	GCNNNNNNNGC	3 cut(s)	36, 381, 696
NaeI	GCCGGC	1 cut(s)	160
NciI	CCSGG	2 cut(s)	36, 764
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	3 cut(s)	295, 740, 828
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	3 cut(s)	53, 158, 320
NlaIV	GGNNCC	2 cut(s)	45, 229
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	3 cut(s)	556, 584, 640
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PaeR7I	CTCGAG	2 cut(s)	362, 501
PagI	TCATGA	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	588
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	92, 121, 322, 725
PflFI	GACNNNGTC	1 cut(s)	562
PflMI	CCANNNNNTGG	1 cut(s)	896
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	377, 698
PleI	GAGTC	3 cut(s)	177, 212, 532
PpsI	GAGTC	3 cut(s)	177, 212, 532
Psp6I	CCWGG	2 cut(s)	388, 767
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	388, 767
PspN4I	GGNNCC	2 cut(s)	45, 229
PspPI	GGNCC	1 cut(s)	765
PspXI	VCTCGAGB	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	828
PsyI	GACNNNGTC	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	576
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	303, 842, 939
SatI	GCNGC	2 cut(s)	376, 697
Sau3AI	GATC	3 cut(s)	295, 740, 828
Sau96I	GGNCC	1 cut(s)	765
SchI	GAGTC	3 cut(s)	177, 213, 532
ScrFI	CCNGG	4 cut(s)	36, 390, 764, 769
SduI	GDGCHC	6 cut(s)	10, 429, 533, 573, 952, 997
SfaNI	GCATC	3 cut(s)	449, 720, 964
SfcI	CTRYAG	2 cut(s)	645, 691
Sfr274I	CTCGAG	2 cut(s)	362, 501
SlaI	CTCGAG	2 cut(s)	362, 501
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	362, 501
SmoI	CTYRAG	2 cut(s)	362, 501
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	3 cut(s)	393, 925, 1034
SsiI	CCGC	1 cut(s)	1016
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	491, 1001
StyD4I	CCNGG	4 cut(s)	34, 388, 762, 767
TaaI	ACNGT	5 cut(s)	27, 424, 556, 607, 944
TaqI	TCGA	5 cut(s)	117, 325, 363, 502, 884
TaqII	GACCGA	2 cut(s)	803, 839
TasI	AATT	3 cut(s)	393, 925, 1034
TfiI	GAWTC	4 cut(s)	92, 121, 322, 725
Tru1I	TTAA	3 cut(s)	303, 842, 939
Tru9I	TTAA	3 cut(s)	303, 842, 939
TscAI	CASTG	5 cut(s)	32, 214, 429, 573, 610
TseFI	GTSAC	3 cut(s)	556, 584, 640
TseI	GCWGC	2 cut(s)	375, 696
Tsp45I	GTSAC	3 cut(s)	556, 584, 640
TspDTI	ATGAA	3 cut(s)	668, 828, 990
TspRI	CASTG	5 cut(s)	32, 214, 429, 573, 610
Tth111I	GACNNNGTC	1 cut(s)	562
Van91I	CCANNNNNTGG	1 cut(s)	896
VneI	GTGCAC	3 cut(s)	6, 425, 569
XagI	CCTNNNNNAGG	1 cut(s)	772
XapI	RAATTY	2 cut(s)	393, 1034
XbaI	TCTAGA	1 cut(s)	490
XceI	RCATGY	1 cut(s)	158
XhoI	CTCGAG	2 cut(s)	362, 501
XmiI	GTMKAC	1 cut(s)	906
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	2 cut(s)	491, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.