Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009281

Physical Location & Seq

Genomic Coordinates Reverse (-)

4337031 .. 4341213

Gene Structure 4183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1039600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCGTGCACCATCATTGCTTGCACAATGTTTGCCCGGCTTGGTGCCTCAAGACAAAGGAAGTCAAAGCGTGTCCTCTATTTCGGAGAGGGATTCGCACCTCCCTTCACCAGCTGTTGAGATTATCCCTTCGAAGACTGCTCACCCGTACAAGTATGCTGGTGAGAATATTGACTTGCAAGGACTCAATGTCTTCAAGGGGAGAGTTAGTGTTTCTGATATCATCGGCTTCAATGGTTCAGAGATGATATCCATAAAACCATATGGGCATCTGAAATCTTGGGATAGCTCCATTGATCTTGTTAATGTCCTTAAGCATGAGATTCGAGATGGGCAAGTGAGCTTTCGAGGAAAAAGGGTGCTTGAGTTGGGTTGCGGCTATGGCCTTCCAGGGATTTTTGCATGCCTAAAGGGAGCTTCCACGGTGCACTTTCAAGACCTGAATGCAGAAACCATTAGATGCACAACTATACCAAATGTCCTAGCCAATCTTGAGCAGGCTCGAGACAGGCAGAGCCGGCAGACAGAAAGCCCTCTGACTCCATCAAGACAAACTGTGACCCAGTCAGTGCATTTTTATGCTGGTGACTGGGAAGAACTTCCCACAGTCTTGTCTATTGTAAGGAATGATGGTGAAGCATCAACAGGAATGAATCTCAGCTTCTCTGAGGAGGATTTTATGGATGGATGTAGCAGCCAAGACGGTAGCATCTTGGCACGAGAATCCTCCTCAAGGCGATCGAGGAAGCTTTCAGGAAGCCGGGCATGGGAGAGGGCTAGCGAGACAGAACAAGGAGGCGGATATGATATTATCTTGCTGACAGAGATCCCATATTCTTTGACCTCGTTGAAGAAACTTTATGCACTCATAAAGAAGTGTTTGAGGCCCCCATATGGAGTGCTGTACTTGGCCACAAAAAGGAACTACGTTGGCTTCAATAGCGGAGCTCGGCATCTCAGAAGCCTGGTAGATGAAGAAGGCATTTTCGGAGCCCATCTAGTGAAGGAGATGGCTGATAGAGATGTATGGAAGTTTTTTTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

349

Amino Acids

38.45

Weight (kDa)

7.64

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43320 AT2G43320
fragaria_vesca	FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150 FvH4_4g11150
malus_domestica	MD04G1039600.v1.1
prunus_persica	Prupe.1G190500_v2.0.a1 Prupe.1G190500_v2.0.a1
pyrus_communis	pycom04g03270
rosa_chinensis	RchiOBHm_Chr4g0407231
rosa_laevigata	RLG00000008737
rosa_multiflora	Rmu_sc0001860.1_g000012 Rmu_sc0004282.1_g000016
rosa_roxburghii	Rroxscaffold_5G00351820
rosa_rugosa	Rorug04G0078400
rosa_samantha	Rh4AG143100 Rh4BG140600 Rh4CG149500 Rh4DG136900
rosa_wichuraiana	Rw4G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	3 cut(s)	375, 798, 942
AclWI	GGATC	1 cut(s)	820
AcoI	YGGCCR	1 cut(s)	909
AfaI	GTAC	2 cut(s)	149, 905
AfiI	CCNNNNNNNGG	4 cut(s)	732, 766, 893, 918
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	5 cut(s)	196, 232, 434, 850, 937
AhdI	GACNNNNNGTC	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	388, 963
AluBI	AGCT	7 cut(s)	113, 288, 342, 416, 660, 748, 947
AluI	AGCT	7 cut(s)	113, 288, 342, 416, 660, 748, 947
Alw21I	GWGCWC	3 cut(s)	10, 429, 949
Alw26I	GTCTC	2 cut(s)	498, 776
Alw44I	GTGCAC	2 cut(s)	6, 425
AlwI	GGATC	1 cut(s)	820
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	3 cut(s)	382, 884, 909
ApaLI	GTGCAC	2 cut(s)	6, 425
ApeKI	GCWGC	1 cut(s)	693
Asp700I	GAANNNNTTC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	885
AsuC2I	CCSGG	2 cut(s)	36, 761
AsuHPI	GGTGA	5 cut(s)	99, 134, 173, 596, 644
AsuII	TTCGAA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	776
AvaI	CYCGRG	1 cut(s)	501
BaeGI	GKGCMC	2 cut(s)	10, 429
BalI	TGGCCA	1 cut(s)	911
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	2 cut(s)	949, 994
BauI	CACGAG	1 cut(s)	717
BbsI	GAAGAC	2 cut(s)	140, 184
Bbv12I	GWGCWC	3 cut(s)	10, 429, 949
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	7 cut(s)	19, 323, 550, 623, 677, 1002, 1003
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	2 cut(s)	390, 965
BcnI	CCSGG	2 cut(s)	36, 761
BcoDI	GTCTC	2 cut(s)	498, 776
BfaI	CTAG	3 cut(s)	482, 777, 998
BfrI	CTTAAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	376, 694
BlsI	GCNGC	2 cut(s)	377, 695
Bme1390I	CCNGG	4 cut(s)	36, 390, 761, 965
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	885
BmiI	GGNNCC	3 cut(s)	45, 887, 991
BmrFI	CCNGG	4 cut(s)	36, 390, 761, 965
BmrI	ACTGGG	2 cut(s)	556, 598
BmsI	GCATC	5 cut(s)	277, 449, 647, 717, 961
BmtI	GCTAGC	1 cut(s)	780
BmuI	ACTGGG	2 cut(s)	556, 598
BpiI	GAAGAC	2 cut(s)	140, 184
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	4 cut(s)	33, 383, 512, 715
BpuMI	CCSGG	2 cut(s)	36, 761
BsaJI	CCNNGG	2 cut(s)	389, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	732, 766, 893, 918
Bse118I	RCCGGY	1 cut(s)	516
Bse1I	ACTGG	2 cut(s)	562, 593
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	390, 965
BseDI	CCNNGG	2 cut(s)	389, 420
BseGI	GGATG	2 cut(s)	688, 692
BseLI	CCNNNNNNNGG	4 cut(s)	732, 766, 893, 918
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	657, 670, 970
BseNI	ACTGG	2 cut(s)	562, 593
BseRI	GAGGAG	2 cut(s)	683, 718
BseSI	GKGCMC	2 cut(s)	10, 429
BseXI	GCAGC	1 cut(s)	705
Bsh1285I	CGRYCG	1 cut(s)	740
BshFI	GGCC	3 cut(s)	384, 886, 911
BshNI	GGYRCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	740
BsiHKAI	GWGCWC	3 cut(s)	10, 429, 949
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	3 cut(s)	36, 517, 760
BslI	CCNNNNNNNGG	4 cut(s)	732, 766, 893, 918
BsmAI	GTCTC	2 cut(s)	498, 776
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	384, 886, 911
BsoBI	CYCGRG	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	4 cut(s)	10, 429, 949, 994
Bsp143I	GATC	3 cut(s)	295, 737, 825
BspACI	CCGC	3 cut(s)	375, 798, 942
BspANI	GGCC	3 cut(s)	384, 886, 911
BspCNI	CTCAG	3 cut(s)	658, 669, 969
BspLI	GGNNCC	3 cut(s)	45, 887, 991
BspOI	GCTAGC	1 cut(s)	780
BspPI	GGATC	1 cut(s)	820
BspT104I	TTCGAA	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	562, 593
BssAI	RCCGGY	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	389, 420
BssMI	GATC	3 cut(s)	295, 737, 825
BssSI	CACGAG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	390, 965
Bst4CI	ACNGT	4 cut(s)	424, 556, 607, 704
BstAFI	CTTAAG	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	6 cut(s)	6, 21, 403, 498, 518, 778
BstDEI	CTNAG	3 cut(s)	656, 666, 956
BstDSI	CCRYGG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	730
BstF5I	GGATG	2 cut(s)	688, 692
BstKTI	GATC	3 cut(s)	298, 740, 828
BstMAI	GTCTC	2 cut(s)	498, 776
BstMBI	GATC	3 cut(s)	295, 737, 825
BstMCI	CGRYCG	1 cut(s)	740
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 517, 939
BstNI	CCWGG	2 cut(s)	390, 965
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	4 cut(s)	34, 388, 759, 963
BstSLI	GKGCMC	2 cut(s)	10, 429
BstV1I	GCAGC	1 cut(s)	705
BstV2I	GAAGAC	2 cut(s)	140, 184
BstX2I	RGATCY	1 cut(s)	825
BstYI	RGATCY	1 cut(s)	825
BsuRI	GGCC	3 cut(s)	384, 886, 911
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	688, 692
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	6 cut(s)	6, 21, 403, 498, 518, 778
Cfr10I	RCCGGY	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	885
Csp6I	GTAC	2 cut(s)	148, 904
CviAII	CATG	3 cut(s)	317, 402, 765
CviQI	GTAC	2 cut(s)	148, 904
DdeI	CTNAG	3 cut(s)	656, 666, 956
DpnI	GATC	3 cut(s)	297, 739, 827
DpnII	GATC	3 cut(s)	295, 737, 825
DriI	GACNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	909
Eam1105I	GACNNNNNGTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	947
Eco24I	GRGCYC	2 cut(s)	949, 994
Eco32I	GATATC	2 cut(s)	220, 249
Eco53kI	GAGCTC	1 cut(s)	947
Eco88I	CYCGRG	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	947
EcoNI	CCTNNNNNAGG	1 cut(s)	730
EcoO109I	RGGNCCY	1 cut(s)	885
EcoRII	CCWGG	2 cut(s)	388, 963
EcoRV	GATATC	2 cut(s)	220, 249
EcoT38I	GRGCYC	2 cut(s)	949, 994
FaeI	CATG	3 cut(s)	320, 405, 768
FatI	CATG	3 cut(s)	316, 401, 764
FauNDI	CATATG	2 cut(s)	262, 892
Fnu4HI	GCNGC	2 cut(s)	376, 694
FokI	GGATG	2 cut(s)	695, 699
FriOI	GRGCYC	2 cut(s)	949, 994
Fsp4HI	GCNGC	2 cut(s)	376, 694
FspBI	CTAG	3 cut(s)	482, 777, 998
GluI	GCNGC	2 cut(s)	376, 694
HaeIII	GGCC	3 cut(s)	384, 886, 911
HapII	CCGG	3 cut(s)	36, 517, 760
Hin1II	CATG	3 cut(s)	320, 405, 768
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	6 cut(s)	92, 183, 322, 538, 652, 722
HpaII	CCGG	3 cut(s)	36, 517, 760
HphI	GGTGA	5 cut(s)	99, 134, 173, 596, 644
Hpy166II	GTNNAC	2 cut(s)	8, 427
Hpy188I	TCNGA	8 cut(s)	85, 217, 241, 273, 537, 667, 959, 989
Hpy188III	TCNNGA	7 cut(s)	50, 326, 434, 491, 503, 546, 753
Hpy8I	GTNNAC	2 cut(s)	8, 427
HpyAV	CCTTC	5 cut(s)	114, 138, 395, 971, 997
HpyCH4III	ACNGT	4 cut(s)	424, 556, 607, 704
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	9 cut(s)	8, 23, 178, 401, 427, 446, 462, 571, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 517, 939
HpyF3I	CTNAG	3 cut(s)	656, 666, 956
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	3 cut(s)	320, 405, 768
KroI	GCCGGC	1 cut(s)	516
KroNI	GCCGGC	1 cut(s)	518
Kzo9I	GATC	3 cut(s)	295, 737, 825
LmnI	GCTCC	4 cut(s)	293, 413, 944, 989
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	5 cut(s)	277, 449, 647, 717, 961
MaeI	CTAG	3 cut(s)	482, 777, 998
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	2 cut(s)	556, 584
MalI	GATC	3 cut(s)	297, 739, 827
MboI	GATC	3 cut(s)	295, 737, 825
MboII	GAAGA	5 cut(s)	145, 184, 605, 862, 986
MflI	RGATCY	1 cut(s)	825
MhlI	GDGCHC	4 cut(s)	10, 429, 949, 994
MlsI	TGGCCA	1 cut(s)	911
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	2 cut(s)	177, 532
Mox20I	TGGCCA	1 cut(s)	911
MroNI	GCCGGC	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	2 cut(s)	303, 312
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	911
MspA1I	CMGCKG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	3 cut(s)	36, 517, 760
MspR9I	CCNGG	4 cut(s)	36, 390, 761, 965
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	390, 965
MwoI	GCNNNNNNNGC	3 cut(s)	381, 517, 939
NaeI	GCCGGC	1 cut(s)	518
NciI	CCSGG	2 cut(s)	36, 761
NdeI	CATATG	2 cut(s)	262, 892
NdeII	GATC	3 cut(s)	295, 737, 825
NgoMIV	GCCGGC	1 cut(s)	516
NheI	GCTAGC	1 cut(s)	776
NlaIII	CATG	3 cut(s)	320, 405, 768
NlaIV	GGNNCC	3 cut(s)	45, 887, 991
NmeAIII	GCCGAG	1 cut(s)	928
NmuCI	GTSAC	2 cut(s)	556, 584
NspI	RCATGY	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	501
PctI	GAATGC	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	92, 322, 652, 722
PflFI	GACNNNGTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	377, 695
Ple19I	CGATCG	1 cut(s)	740
PleI	GAGTC	2 cut(s)	177, 532
PpsI	GAGTC	2 cut(s)	177, 532
Psp124BI	GAGCTC	1 cut(s)	949
Psp6I	CCWGG	2 cut(s)	388, 963
PspGI	CCWGG	2 cut(s)	388, 963
PspN4I	GGNNCC	3 cut(s)	45, 887, 991
PspPI	GGNCC	1 cut(s)	885
PsuI	RGATCY	1 cut(s)	825
PsyI	GACNNNGTC	1 cut(s)	562
PvuI	CGATCG	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	149, 905
RsaNI	GTAC	2 cut(s)	148, 904
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	949
SaqAI	TTAA	2 cut(s)	303, 312
SatI	GCNGC	2 cut(s)	376, 694
Sau3AI	GATC	3 cut(s)	295, 737, 825
Sau96I	GGNCC	1 cut(s)	885
SchI	GAGTC	2 cut(s)	177, 532
ScrFI	CCNGG	4 cut(s)	36, 390, 761, 965
SduI	GDGCHC	4 cut(s)	10, 429, 949, 994
SfaNI	GCATC	5 cut(s)	277, 449, 647, 717, 961
Sfr274I	CTCGAG	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	6 cut(s)	48, 311, 362, 491, 501, 730
SmoI	CTYRAG	6 cut(s)	48, 311, 362, 491, 501, 730
SphI	GCATGC	1 cut(s)	405
SsiI	CCGC	3 cut(s)	375, 798, 942
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	3 cut(s)	482, 777, 998
SstI	GAGCTC	1 cut(s)	949
StyD4I	CCNGG	4 cut(s)	34, 388, 759, 963
TaaI	ACNGT	4 cut(s)	424, 556, 607, 704
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	5 cut(s)	131, 325, 346, 502, 740
TatI	WGTACW	1 cut(s)	903
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	4 cut(s)	92, 322, 652, 722
Tru1I	TTAA	2 cut(s)	303, 312
Tru9I	TTAA	2 cut(s)	303, 312
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	2 cut(s)	556, 584
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	2 cut(s)	556, 584
TspDTI	ATGAA	2 cut(s)	665, 987
TspRI	CASTG	1 cut(s)	573
Tth111I	GACNNNGTC	1 cut(s)	562
Vha464I	CTTAAG	1 cut(s)	311
VneI	GTGCAC	2 cut(s)	6, 425
XagI	CCTNNNNNAGG	1 cut(s)	730
XceI	RCATGY	1 cut(s)	405
XhoI	CTCGAG	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	3 cut(s)	482, 777, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.