AT2G43540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017197
Physical Location & Seq
Forward (+)
18072127 .. 18073100
974 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43540.1

Sequence Viewer

Length: 510 bp
ATGGGGATATCGGGTTCAAAGCGAGTTACGACGATTCTATCTAACTCGCCCGAGTTTGACTCGGCTTGTGACTCAGCATACGACGAATCTCTCTCTCTTGCACAGCATGCTTTCGCCGGAGTTCGTCCTTACCAGCTCGTCTCCGCCGCCGCCCACATCCACCGGAATCTTTCCGCTCTTCGTTTCCCTCTAATCACCAGATGGCTCTCTTCTCCTCCGAGTCAATCCCAAGTCGACTCAGCTCTCCGAGTCACCGTCTCTCGAGTCACGGCGGCGGATGAGGAGGAGATCCTCGGGCAAGAGGAGTTCAAGAAATGGGCCGTCGAGGTTTTCGCGGAAGCCGTTGTGGGAAACGCGAGGAAGACAATAGCGAGTCGGATTCCGTTAGGAATCGTCGGAATCGGTGGGATCGGCGCCGTGACTCGGTCGGGTCAAAACTTGATCGGAGCTGCGATTGGTGTGTACGCGATAGGAGTTGCTACTTCCGTTTTTCTAAGCCTCACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

17.8

Weight (kDa)

6.29

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AccBSI CCGCTC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 234
AccII CGCG 3 cut(s) 335, 356, 467
AciI CCGC 7 cut(s) 144, 147, 150, 174, 272, 275, 335
AclWI GGATC 2 cut(s) 283, 416
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 2 cut(s) 18, 310
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 3 cut(s) 136, 242, 449
AluI AGCT 3 cut(s) 136, 242, 449
Alw26I GTCTC 2 cut(s) 145, 262
AlwI GGATC 2 cut(s) 283, 416
Ama87I CYCGRG 3 cut(s) 50, 261, 293
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 449
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 187, 244
AvaI CYCGRG 3 cut(s) 50, 261, 293
BanI GGYRCC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 436
BccI CCATC 1 cut(s) 195
BceAI ACGGC 4 cut(s) 285, 305, 326, 401
BcoDI GTCTC 2 cut(s) 145, 262
BfoI RGCGCY 1 cut(s) 417
BisI GCNGC 4 cut(s) 147, 150, 273, 450
BlsI GCNGC 4 cut(s) 148, 151, 274, 451
BmeT110I CYCGRG 3 cut(s) 50, 261, 293
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 368
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 2 cut(s) 156, 283
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 2 cut(s) 87, 252
BseRI GAGGAG 4 cut(s) 204, 296, 299, 317
BseXI GCAGC 1 cut(s) 436
Bsh1236I CGCG 3 cut(s) 335, 356, 467
Bsh1285I CGRYCG 1 cut(s) 428
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 428
BsiHKCI CYCGRG 3 cut(s) 50, 261, 293
BsiSI CCGG 2 cut(s) 117, 163
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 2 cut(s) 145, 262
BsmBI CGTCTC 2 cut(s) 145, 262
BsnI GGCC 1 cut(s) 320
BsoBI CYCGRG 3 cut(s) 50, 261, 293
Bsp143I GATC 3 cut(s) 288, 408, 441
BspACI CCGC 7 cut(s) 144, 147, 150, 174, 272, 275, 335
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 86, 251
BspFNI CGCG 3 cut(s) 335, 356, 467
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 2 cut(s) 283, 416
BspQI GCTCTTC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 3 cut(s) 288, 408, 441
BssNI GRCGYC 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 183, 214
BstACI GRCGYC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 73, 238, 494
BstF5I GGATG 2 cut(s) 156, 283
BstFNI CGCG 3 cut(s) 335, 356, 467
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 3 cut(s) 291, 411, 444
BstMAI GTCTC 2 cut(s) 145, 262
BstMBI GATC 3 cut(s) 288, 408, 441
BstMCI CGRYCG 1 cut(s) 428
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 110
BstUI CGCG 3 cut(s) 335, 356, 467
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 2 cut(s) 156, 283
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 1 cut(s) 463
CviAII CATG 1 cut(s) 107
CviJI RGCY 8 cut(s) 65, 136, 205, 242, 320, 341, 449, 498
CviKI_1 RGCY 8 cut(s) 65, 136, 205, 242, 320, 341, 449, 498
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 3 cut(s) 73, 238, 494
DinI GGCGCC 1 cut(s) 415
DpnI GATC 3 cut(s) 290, 410, 443
DpnII GATC 3 cut(s) 288, 408, 441
Eam1104I CTCTTC 2 cut(s) 183, 214
EarI CTCTTC 2 cut(s) 183, 214
EciI GGCGGA 2 cut(s) 133, 290
Eco32I GATATC 1 cut(s) 9
Eco88I CYCGRG 3 cut(s) 50, 261, 293
EcoRV GATATC 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
Esp3I CGTCTC 2 cut(s) 145, 262
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 79, 108
FatI CATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 4 cut(s) 147, 150, 273, 450
FokI GGATG 2 cut(s) 143, 290
Fsp4HI GCNGC 4 cut(s) 147, 150, 273, 450
GlaI GCGC 1 cut(s) 415
GluI GCNGC 4 cut(s) 147, 150, 273, 450
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 1 cut(s) 320
HapII CCGG 2 cut(s) 117, 163
HhaI GCGC 1 cut(s) 416
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HpaII CCGG 2 cut(s) 117, 163
HphI GGTGA 2 cut(s) 187, 244
Hpy166II GTNNAC 2 cut(s) 235, 463
Hpy188I TCNGA 5 cut(s) 219, 248, 378, 398, 446
Hpy188III TCNNGA 2 cut(s) 261, 310
Hpy8I GTNNAC 2 cut(s) 235, 463
Hpy99I CGWCG 4 cut(s) 34, 86, 326, 398
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 3 cut(s) 73, 238, 494
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 1 cut(s) 414
KasI GGCGCC 1 cut(s) 413
Kzo9I GATC 3 cut(s) 288, 408, 441
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 4 cut(s) 130, 146, 176, 211
Lsp1109I GCAGC 1 cut(s) 436
MaeIII GTNAC 5 cut(s) 25, 68, 250, 265, 418
MalI GATC 3 cut(s) 290, 410, 443
MbiI CCGCTC 1 cut(s) 176
MboI GATC 3 cut(s) 288, 408, 441
MboII GAAGA 3 cut(s) 170, 201, 373
MflI RGATCY 1 cut(s) 288
Mly113I GGCGCC 1 cut(s) 414
MlyI GAGTC 8 cut(s) 53, 65, 229, 230, 258, 273, 382, 415
MmeI TCCRAC 2 cut(s) 356, 376
MnlI CCTC 9 cut(s) 198, 225, 274, 277, 295, 302, 319, 351, 509
MspI CCGG 2 cut(s) 117, 163
MvnI CGCG 3 cut(s) 335, 356, 467
MwoI GCNNNNNNNGC 1 cut(s) 107
NarI GGCGCC 1 cut(s) 414
NdeII GATC 3 cut(s) 288, 408, 441
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 415
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 4 cut(s) 68, 250, 265, 418
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PfeI GAWTC 6 cut(s) 34, 86, 166, 379, 390, 399
PflFI GACNNNGTC 1 cut(s) 424
PkrI GCNGC 4 cut(s) 148, 151, 274, 451
PleI GAGTC 8 cut(s) 53, 65, 228, 230, 257, 272, 381, 415
PluTI GGCGCC 1 cut(s) 417
PpsI GAGTC 8 cut(s) 53, 65, 228, 230, 257, 272, 381, 415
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 318
PsuI RGATCY 1 cut(s) 288
PsyI GACNNNGTC 1 cut(s) 424
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SalI GTCGAC 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 183
SatI GCNGC 4 cut(s) 147, 150, 273, 450
Sau3AI GATC 3 cut(s) 288, 408, 441
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 8 cut(s) 53, 65, 229, 230, 258, 273, 382, 415
SetI ASST 4 cut(s) 138, 244, 330, 451
SfoI GGCGCC 1 cut(s) 415
Sfr274I CTCGAG 1 cut(s) 261
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SphI GCATGC 1 cut(s) 110
SsiI CCGC 7 cut(s) 144, 147, 150, 174, 272, 275, 335
SspDI GGCGCC 1 cut(s) 413
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 3 cut(s) 234, 262, 324
TaqII GACCGA 1 cut(s) 414
TauI GCSGC 3 cut(s) 149, 152, 275
TfiI GAWTC 6 cut(s) 34, 86, 166, 379, 390, 399
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 4 cut(s) 68, 250, 265, 418
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 4 cut(s) 68, 250, 265, 418
TspGWI ACGGA 2 cut(s) 372, 475
TspRI CASTG 1 cut(s) 508
Tth111I GACNNNGTC 1 cut(s) 424
XceI RCATGY 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.