RLG00000019725

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017197
Physical Location & Seq
Reverse (-)
55990310 .. 55990810
501 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019725

Sequence Viewer

Length: 501 bp
ATGGGGGCCTCTCCGTCAAAGCGAGTCAAGTCGTCCTTTTCCAACTCGCCCGAGTTCAATTCAGCCTGCGACTCGGCCTTCAGCCACTGCCTCTCTCTGACCGAGCACGGCTTCGACGGCGTCTTCCCCTTCCAGCTCGCCACCGCCTCCGACCATCTCTACCAAACCCTCCAGGCCGGGCCTCACCCCCACCCTCTCATCCTCAGGTGGGTCCCTTCTCCCCCGACTCGCTCCCAGGTCGACTCCGCTCTCAGGGCTGTCCCTGGCGAGTCCAAGGCGACGACACTCGGCCCGGACCAGTTCAAGCAGTGGGCCGTCGAGCTCTTCGCCGGCGCCGTCGTCGGTAACGCTCGCAAAGCACTCATGGTTCGGGTCCCCATCGGCGTCGCTGGGATTGCTGGCTTGGGGGCCGCCAGTCGCTCCGGTAAGGACATTGTTGGAACCGCGATTGGGGTGTACGCGCTTGGCGTTGCCACCGCCATTTATCTCGGTTTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.27

Weight (kDa)

9.06

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 240
AccII CGCG 2 cut(s) 446, 461
AciI CCGC 5 cut(s) 144, 246, 411, 444, 477
AcuI CTGAAG 1 cut(s) 64
AcyI GRCGYC 3 cut(s) 120, 333, 384
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 3 cut(s) 208, 252, 450
AgsI TTSAA 2 cut(s) 58, 304
AjnI CCWGG 3 cut(s) 171, 234, 262
AluBI AGCT 2 cut(s) 136, 322
AluI AGCT 2 cut(s) 136, 322
Alw21I GWGCWC 2 cut(s) 108, 324
AlwNI CAGNNNCTG 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 7 cut(s) 6, 75, 174, 179, 289, 312, 408
AspLEI GCGC 2 cut(s) 335, 463
AspS9I GGNCC 8 cut(s) 6, 179, 211, 290, 295, 312, 373, 408
AsuC2I CCSGG 2 cut(s) 178, 293
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 3 cut(s) 211, 295, 373
AxyI CCTNAGG 1 cut(s) 203
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 108, 324
BccI CCATC 2 cut(s) 162, 386
BceAI ACGGC 4 cut(s) 124, 133, 299, 320
BciT130I CCWGG 3 cut(s) 173, 236, 264
BcnI CCSGG 2 cut(s) 178, 293
BfoI RGCGCY 1 cut(s) 336
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 5 cut(s) 173, 178, 236, 264, 293
Bme18I GGWCC 3 cut(s) 211, 295, 373
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 8 cut(s) 6, 179, 211, 290, 295, 312, 373, 408
BmiI GGNNCC 8 cut(s) 7, 212, 213, 334, 374, 375, 409, 442
BmrFI CCNGG 5 cut(s) 173, 178, 236, 264, 293
BpiI GAAGAC 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 178, 293
BsaHI GRCGYC 3 cut(s) 120, 333, 384
BsaJI CCNNGG 3 cut(s) 234, 262, 273
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 252, 450
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 298, 414
Bse21I CCTNAGG 1 cut(s) 203
BseBI CCWGG 3 cut(s) 173, 236, 264
BseDI CCNNGG 3 cut(s) 234, 262, 273
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 208, 252, 450
BseMII CTCAG 2 cut(s) 217, 265
BseNI ACTGG 2 cut(s) 298, 414
BseYI CCCAGC 1 cut(s) 389
Bsh1236I CGCG 2 cut(s) 446, 461
BshFI GGCC 7 cut(s) 8, 77, 176, 181, 291, 314, 410
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 2 cut(s) 108, 324
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 177, 293, 330, 423
BslFI GGGAC 3 cut(s) 197, 245, 359
BslI CCNNNNNNNGG 3 cut(s) 208, 252, 450
BsmFI GGGAC 3 cut(s) 197, 245, 359
BsnI GGCC 7 cut(s) 8, 77, 176, 181, 291, 314, 410
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 108, 324
BspACI CCGC 5 cut(s) 144, 246, 411, 444, 477
BspANI GGCC 7 cut(s) 8, 77, 176, 181, 291, 314, 410
BspCNI CTCAG 2 cut(s) 216, 264
BspFNI CGCG 2 cut(s) 446, 461
BspLI GGNNCC 8 cut(s) 7, 212, 213, 334, 374, 375, 409, 442
BspQI GCTCTTC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 2 cut(s) 298, 414
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 234, 262, 273
BssNI GRCGYC 3 cut(s) 120, 333, 384
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 173, 236, 264
Bst4CI ACNGT 1 cut(s) 498
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 3 cut(s) 120, 333, 384
BstC8I GCNNGC 5 cut(s) 67, 138, 331, 352, 400
BstDEI CTNAG 2 cut(s) 203, 251
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 2 cut(s) 446, 461
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 335, 463
BstMWI GCNNNNNNNGC 4 cut(s) 117, 254, 356, 395
BstNI CCWGG 3 cut(s) 173, 236, 264
BstSCI CCNGG 5 cut(s) 171, 176, 234, 262, 291
BstUI CGCG 2 cut(s) 446, 461
BstV2I GAAGAC 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 7 cut(s) 8, 77, 176, 181, 291, 314, 410
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 2 cut(s) 85, 314
BtsIMutI CAGTG 2 cut(s) 85, 314
Cac8I GCNNGC 5 cut(s) 67, 138, 331, 352, 400
CaiI CAGNNNCTG 1 cut(s) 87
CfoI GCGC 2 cut(s) 335, 463
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 8 cut(s) 6, 179, 211, 290, 295, 312, 373, 408
CseI GACGC 2 cut(s) 109, 373
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 364
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 203, 251
DinI GGCGCC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 3 cut(s) 211, 295, 373
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 3 cut(s) 6, 211, 373
EcoRII CCWGG 3 cut(s) 171, 234, 262
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 334
EheI GGCGCC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 367
FaiI YATR 1 cut(s) 365
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 3 cut(s) 197, 245, 359
FatI CATG 1 cut(s) 363
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 411
GlaI GCGC 2 cut(s) 334, 462
GluI GCNGC 1 cut(s) 411
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 7 cut(s) 8, 77, 176, 181, 291, 314, 410
HapII CCGG 4 cut(s) 177, 293, 330, 423
HgaI GACGC 2 cut(s) 109, 373
HhaI GCGC 2 cut(s) 335, 463
Hin1I GRCGYC 3 cut(s) 120, 333, 384
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 2 cut(s) 333, 461
HinP1I GCGC 2 cut(s) 333, 461
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 5 cut(s) 24, 71, 226, 242, 269
HpaII CCGG 4 cut(s) 177, 293, 330, 423
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 3 cut(s) 241, 457, 494
Hpy188I TCNGA 2 cut(s) 99, 151
Hpy8I GTNNAC 3 cut(s) 241, 457, 494
Hpy99I CGWCG 6 cut(s) 119, 283, 320, 341, 344, 389
HpyAV CCTTC 3 cut(s) 88, 139, 225
HpyCH4III ACNGT 1 cut(s) 498
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 254, 356, 395
HpyF3I CTNAG 2 cut(s) 203, 251
Hsp92I GRCGYC 3 cut(s) 120, 333, 384
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 2 cut(s) 333, 461
KasI GGCGCC 1 cut(s) 332
KflI GGGWCCC 2 cut(s) 211, 373
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 2 cut(s) 236, 425
MaeIII GTNAC 1 cut(s) 344
MbiI CCGCTC 1 cut(s) 248
MboII GAAGA 2 cut(s) 115, 316
MhlI GDGCHC 2 cut(s) 108, 324
MluCI AATT 1 cut(s) 58
Mly113I GGCGCC 1 cut(s) 333
MlyI GAGTC 5 cut(s) 33, 65, 220, 236, 278
MmeI TCCRAC 3 cut(s) 66, 174, 418
MnlI CCTC 7 cut(s) 19, 101, 157, 179, 192, 204, 212
MreI CGCCGGCG 1 cut(s) 329
MroNI GCCGGC 1 cut(s) 329
MspI CCGG 4 cut(s) 177, 293, 330, 423
MspR9I CCNGG 5 cut(s) 173, 178, 236, 264, 293
MvaI CCWGG 3 cut(s) 173, 236, 264
MvnI CGCG 2 cut(s) 446, 461
MwoI GCNNNNNNNGC 4 cut(s) 117, 254, 356, 395
NaeI GCCGGC 1 cut(s) 331
NarI GGCGCC 1 cut(s) 333
NciI CCSGG 2 cut(s) 178, 293
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 8 cut(s) 7, 212, 213, 334, 374, 375, 409, 442
NmeAIII GCCGAG 2 cut(s) 53, 267
PciSI GCTCTTC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 465
PdiI GCCGGC 1 cut(s) 331
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 5 cut(s) 32, 65, 220, 236, 277
PluTI GGCGCC 1 cut(s) 336
PpsI GAGTC 5 cut(s) 32, 65, 220, 236, 277
PpuMI RGGWCCY 2 cut(s) 211, 373
Psp124BI GAGCTC 1 cut(s) 324
Psp5II RGGWCCY 2 cut(s) 211, 373
Psp6I CCWGG 3 cut(s) 171, 234, 262
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 3 cut(s) 171, 234, 262
PspN4I GGNNCC 8 cut(s) 7, 212, 213, 334, 374, 375, 409, 442
PspPI GGNCC 8 cut(s) 6, 179, 211, 290, 295, 312, 373, 408
PspPPI RGGWCCY 2 cut(s) 211, 373
PstNI CAGNNNCTG 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 329
SatI GCNGC 1 cut(s) 411
Sau96I GGNCC 8 cut(s) 6, 179, 211, 290, 295, 312, 373, 408
SchI GAGTC 5 cut(s) 33, 65, 220, 236, 278
ScrFI CCNGG 5 cut(s) 173, 178, 236, 264, 293
SduI GDGCHC 2 cut(s) 108, 324
SetI ASST 4 cut(s) 138, 209, 240, 324
SfoI GGCGCC 1 cut(s) 334
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 3 cut(s) 211, 295, 373
Sse9I AATT 1 cut(s) 58
SsiI CCGC 5 cut(s) 144, 246, 411, 444, 477
SspDI GGCGCC 1 cut(s) 332
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 5 cut(s) 171, 176, 234, 262, 291
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 498
TaqI TCGA 3 cut(s) 114, 240, 318
TaqII GACCGA 1 cut(s) 116
TasI AATT 1 cut(s) 58
TauI GCSGC 1 cut(s) 413
TscAI CASTG 2 cut(s) 92, 314
TspRI CASTG 2 cut(s) 92, 314
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 3 cut(s) 211, 295, 373
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.