Rorug02G0349600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017197
Physical Location & Seq
Forward (+)
43919819 .. 43920889
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0349600.1

Sequence Viewer

Length: 426 bp
ATGGATAATAAGGTATGGTCCTGTTATCCTCTCCAACCCTATATACATGAAATCCAACTACATGCAATGAAAGCTGCAAAAATACAAGTGGACTATCCTGGCTTTGAAAAACACAGTGGTAGAGAAATGGCAACGGTCTTTGCGAGAGGAGCACAGACCATGAACACCATGTTTTTCAAGCCGGTGGGGCGAAAAGCTTTCCACAAGAAAAGCACTTCCGCGGATATGATAAGAGAAACCAGGAAGTTTGAAGGTGATGAAATGAAGAACAATAGCCATATGAGTATGGAATCAGAAAATGATGGCAATATTTCCTGGGTTCCCCATGAGAGGACTGGGATTTATTACCCCAAAGGCCAAGAGAAAGTGATGGACGAAATTTCTCCAGCAGCTGGCAGGGATATGGGTGTCAATTGGTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.25

Weight (kDa)

7.88

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 392
AccII CGCG 1 cut(s) 221
AciI CCGC 2 cut(s) 219, 221
AcsI RAATTY 1 cut(s) 378
AfiI CCNNNNNNNGG 2 cut(s) 330, 392
AgsI TTSAA 3 cut(s) 107, 178, 251
AjnI CCWGG 3 cut(s) 97, 239, 314
AluBI AGCT 3 cut(s) 74, 197, 392
AluI AGCT 3 cut(s) 74, 197, 392
Alw21I GWGCWC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 2 cut(s) 74, 389
ApoI RAATTY 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 61, 401
BccI CCATC 2 cut(s) 296, 364
BciT130I CCWGG 3 cut(s) 99, 241, 316
BglI GCCNNNNNGGC 1 cut(s) 187
BisI GCNGC 2 cut(s) 75, 390
BlsI GCNGC 2 cut(s) 76, 391
Bme1390I CCNGG 3 cut(s) 99, 241, 316
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 3 cut(s) 99, 241, 316
BmrI ACTGGG 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 219, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 392
Bse118I RCCGGY 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 3 cut(s) 99, 241, 316
BseDI CCNNGG 2 cut(s) 219, 315
BseLI CCNNNNNNNGG 2 cut(s) 330, 392
BseMI GCAATG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 61, 401
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 330, 392
BsnI GGCC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 154
BspACI CCGC 2 cut(s) 219, 221
BspANI GGCC 1 cut(s) 357
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 181
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 219, 315
Bst2UI CCWGG 3 cut(s) 99, 241, 316
Bst4CI ACNGT 2 cut(s) 116, 136
BstC8I GCNNGC 1 cut(s) 394
BstDSI CCRYGG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 3 cut(s) 71, 149, 187
BstNI CCWGG 3 cut(s) 99, 241, 316
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 3 cut(s) 97, 239, 314
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 61, 401
BsuRI GGCC 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 392
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 18
Cfr42I CCGCGG 1 cut(s) 222
CviAII CATG 5 cut(s) 47, 62, 160, 169, 326
CviJI RGCY 7 cut(s) 74, 102, 181, 197, 276, 357, 392
CviKI_1 RGCY 7 cut(s) 74, 102, 181, 197, 276, 357, 392
Eco47I GGWCC 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 97, 239, 314
FaeI CATG 5 cut(s) 50, 65, 163, 172, 329
FatI CATG 5 cut(s) 46, 61, 159, 168, 325
FauNDI CATATG 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 75, 390
Fsp4HI GCNGC 2 cut(s) 75, 390
GluI GCNGC 2 cut(s) 75, 390
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 182
Hin1II CATG 5 cut(s) 50, 65, 163, 172, 329
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 91, 420
Hpy188I TCNGA 1 cut(s) 295
Hpy8I GTNNAC 2 cut(s) 91, 420
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 2 cut(s) 116, 136
HpyCH4V TGCA 2 cut(s) 65, 77
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 149, 187
Hsp92II CATG 5 cut(s) 50, 65, 163, 172, 329
KspI CCGCGG 1 cut(s) 222
LmnI GCTCC 1 cut(s) 149
Lsp1109I GCAGC 2 cut(s) 61, 401
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 2 cut(s) 378, 412
MmeI TCCRAC 2 cut(s) 58, 79
MnlI CCTC 3 cut(s) 39, 140, 324
MseI TTAA 1 cut(s) 424
MspA1I CMGCKG 2 cut(s) 221, 392
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 3 cut(s) 99, 241, 316
MunI CAATTG 1 cut(s) 412
MvaI CCWGG 3 cut(s) 99, 241, 316
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 71, 149, 187
NdeI CATATG 1 cut(s) 279
NlaIII CATG 5 cut(s) 50, 65, 163, 172, 329
NlaIV GGNNCC 1 cut(s) 321
NspI RCATGY 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PfeI GAWTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 392
PkrI GCNGC 2 cut(s) 76, 391
Psp6I CCWGG 3 cut(s) 97, 239, 314
PspGI CCWGG 3 cut(s) 97, 239, 314
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 392
SacII CCGCGG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 424
SatI GCNGC 2 cut(s) 75, 390
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 3 cut(s) 99, 241, 316
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 15, 76, 199, 256, 394
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 1 cut(s) 18
Sse9I AATT 2 cut(s) 378, 412
SsiI CCGC 2 cut(s) 219, 221
SspI AATATT 1 cut(s) 310
StyD4I CCNGG 3 cut(s) 97, 239, 314
TaaI ACNGT 2 cut(s) 116, 136
TasI AATT 2 cut(s) 378, 412
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 424
Tru9I TTAA 1 cut(s) 424
TscAI CASTG 1 cut(s) 121
TseI GCWGC 2 cut(s) 74, 389
TspDTI ATGAA 5 cut(s) 63, 83, 176, 273, 278
TspRI CASTG 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.