Rmu_sc0019944.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019944.1
OG0017197
Physical Location & Seq
Reverse (-)
2 .. 432
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019944.1_g000001.1.cds

Sequence Viewer

Length: 431 bp
atgggggtgtctccgtcaaagcgagtcaagtcgtccttttccaactcgcccgagttcaactcagcctgcgactcggccttcagccactgcctctctctgaccgagcacggcttcgacggcgtcttccccttccagctcgccaccgcctccgaccatctctaccaaaacctccaggccgggccccacccccaccctctcatcctcaggtgggtcccttctccccccactcgctcccaggtcgactccgctctcagggccgtccctcgcgagtccacgacgacgacgacgacactcggcccggcccagttcaagcagtgggccgtcgagctcttcgccggcgccgtcgtcggtaacgctcgccaagcactcatggttcgggtccccatcggcgtcgctgggattgctggcttgggggccgccagtcgctccgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.19

Weight (kDa)

9.3

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 267
AciI CCGC 3 cut(s) 144, 246, 417
AcuI CTGAAG 1 cut(s) 64
AcyI GRCGYC 3 cut(s) 120, 339, 390
AfiI CCNNNNNNNGG 2 cut(s) 208, 252
AgsI TTSAA 2 cut(s) 58, 310
AjnI CCWGG 2 cut(s) 171, 234
AluBI AGCT 2 cut(s) 136, 328
AluI AGCT 2 cut(s) 136, 328
Alw21I GWGCWC 2 cut(s) 108, 330
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 8 cut(s) 75, 174, 179, 255, 295, 300, 318, 414
ApaI GGGCCC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 9 cut(s) 179, 180, 211, 255, 296, 301, 318, 379, 414
AsuC2I CCSGG 2 cut(s) 178, 299
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 2 cut(s) 211, 379
AxyI CCTNAGG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 338
BanII GRGCYC 2 cut(s) 183, 330
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 108, 330
BccI CCATC 2 cut(s) 162, 392
BceAI ACGGC 5 cut(s) 124, 133, 242, 305, 326
BciT130I CCWGG 2 cut(s) 173, 236
BcnI CCSGG 2 cut(s) 178, 299
BcoDI GTCTC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 4 cut(s) 173, 178, 236, 299
Bme18I GGWCC 2 cut(s) 211, 379
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 9 cut(s) 179, 180, 211, 255, 296, 301, 318, 379, 414
BmiI GGNNCC 8 cut(s) 181, 182, 212, 213, 340, 380, 381, 415
BmrFI CCNGG 4 cut(s) 173, 178, 236, 299
BmrI ACTGGG 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 178, 299
BsaHI GRCGYC 3 cut(s) 120, 339, 390
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 252
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 2 cut(s) 304, 420
Bse21I CCTNAGG 1 cut(s) 203
BseBI CCWGG 2 cut(s) 173, 236
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 208, 252
BseMII CTCAG 3 cut(s) 75, 217, 265
BseNI ACTGG 2 cut(s) 304, 420
BseSI GKGCMC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 8 cut(s) 77, 176, 181, 257, 297, 302, 320, 416
BshNI GGYRCC 1 cut(s) 338
BsiHKAI GWGCWC 2 cut(s) 108, 330
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 177, 299, 336, 429
BslFI GGGAC 3 cut(s) 197, 245, 365
BslI CCNNNNNNNGG 2 cut(s) 208, 252
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 3 cut(s) 197, 245, 365
BsnI GGCC 8 cut(s) 77, 176, 181, 257, 297, 302, 320, 416
BsoBI CYCGRG 1 cut(s) 50
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 108, 183, 330
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 3 cut(s) 144, 246, 417
BspANI GGCC 8 cut(s) 77, 176, 181, 257, 297, 302, 320, 416
BspCNI CTCAG 3 cut(s) 74, 216, 264
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 8 cut(s) 181, 182, 212, 213, 340, 380, 381, 415
BspQI GCTCTTC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 2 cut(s) 304, 420
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 234
BssNI GRCGYC 3 cut(s) 120, 339, 390
Bst2UI CCWGG 2 cut(s) 173, 236
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 3 cut(s) 120, 339, 390
BstC8I GCNNGC 5 cut(s) 67, 138, 337, 358, 406
BstDEI CTNAG 3 cut(s) 61, 203, 251
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstMAI GTCTC 1 cut(s) 15
BstMWI GCNNNNNNNGC 4 cut(s) 117, 254, 362, 401
BstNI CCWGG 2 cut(s) 173, 236
BstSCI CCNGG 4 cut(s) 171, 176, 234, 297
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 8 cut(s) 77, 176, 181, 257, 297, 302, 320, 416
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 2 cut(s) 85, 320
BtsIMutI CAGTG 2 cut(s) 85, 320
BtuMI TCGCGA 1 cut(s) 267
Cac8I GCNNGC 5 cut(s) 67, 138, 337, 358, 406
CaiI CAGNNNCTG 1 cut(s) 87
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 9 cut(s) 179, 180, 211, 255, 296, 301, 318, 379, 414
CseI GACGC 2 cut(s) 109, 379
CviAII CATG 1 cut(s) 370
DdeI CTNAG 3 cut(s) 61, 203, 251
DinI GGCGCC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 2 cut(s) 183, 330
Eco47I GGWCC 2 cut(s) 211, 379
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 3 cut(s) 180, 211, 379
EcoRII CCWGG 2 cut(s) 171, 234
EcoT38I GRGCYC 2 cut(s) 183, 330
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
FaeI CATG 1 cut(s) 373
FaiI YATR 1 cut(s) 371
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 3 cut(s) 197, 245, 365
FatI CATG 1 cut(s) 369
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 2 cut(s) 183, 330
Fsp4HI GCNGC 1 cut(s) 417
GlaI GCGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 417
GsaI CCCAGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 8 cut(s) 77, 176, 181, 257, 297, 302, 320, 416
HapII CCGG 4 cut(s) 177, 299, 336, 429
HgaI GACGC 2 cut(s) 109, 379
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 3 cut(s) 120, 339, 390
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 24, 71, 242, 269
HpaII CCGG 4 cut(s) 177, 299, 336, 429
Hpy166II GTNNAC 2 cut(s) 241, 273
Hpy188I TCNGA 2 cut(s) 99, 151
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 2 cut(s) 241, 273
Hpy99I CGWCG 9 cut(s) 119, 280, 283, 286, 289, 326, 347, 350, 395
HpyAV CCTTC 3 cut(s) 88, 139, 225
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 254, 362, 401
HpyF3I CTNAG 3 cut(s) 61, 203, 251
Hsp92I GRCGYC 3 cut(s) 120, 339, 390
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 339
KasI GGCGCC 1 cut(s) 338
KflI GGGWCCC 2 cut(s) 211, 379
KroI GCCGGC 1 cut(s) 335
KroNI GCCGGC 1 cut(s) 337
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 236, 431
MaeIII GTNAC 1 cut(s) 350
MbiI CCGCTC 1 cut(s) 248
MboII GAAGA 2 cut(s) 115, 322
MhlI GDGCHC 3 cut(s) 108, 183, 330
Mly113I GGCGCC 1 cut(s) 339
MlyI GAGTC 4 cut(s) 33, 65, 236, 278
MmeI TCCRAC 2 cut(s) 66, 174
MnlI CCTC 6 cut(s) 101, 157, 179, 204, 212, 273
MreI CGCCGGCG 1 cut(s) 335
MroNI GCCGGC 1 cut(s) 335
MspI CCGG 4 cut(s) 177, 299, 336, 429
MspR9I CCNGG 4 cut(s) 173, 178, 236, 299
MvaI CCWGG 2 cut(s) 173, 236
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 117, 254, 362, 401
NaeI GCCGGC 1 cut(s) 337
NarI GGCGCC 1 cut(s) 339
NciI CCSGG 2 cut(s) 178, 299
NgoMIV GCCGGC 1 cut(s) 335
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 8 cut(s) 181, 182, 212, 213, 340, 380, 381, 415
NmeAIII GCCGAG 2 cut(s) 53, 273
NruI TCGCGA 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 3 cut(s) 281, 284, 339
PdiI GCCGGC 1 cut(s) 337
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 4 cut(s) 32, 65, 236, 277
PluTI GGCGCC 1 cut(s) 342
PpsI GAGTC 4 cut(s) 32, 65, 236, 277
PpuMI RGGWCCY 2 cut(s) 211, 379
Psp124BI GAGCTC 1 cut(s) 330
Psp5II RGGWCCY 2 cut(s) 211, 379
Psp6I CCWGG 2 cut(s) 171, 234
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 2 cut(s) 171, 234
PspN4I GGNNCC 8 cut(s) 181, 182, 212, 213, 340, 380, 381, 415
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 9 cut(s) 179, 180, 211, 255, 296, 301, 318, 379, 414
PspPPI RGGWCCY 2 cut(s) 211, 379
PstNI CAGNNNCTG 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 119
RruI TCGCGA 1 cut(s) 267
SacI GAGCTC 1 cut(s) 330
SalI GTCGAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 335
SatI GCNGC 1 cut(s) 417
Sau96I GGNCC 9 cut(s) 179, 180, 211, 255, 296, 301, 318, 379, 414
SchI GAGTC 4 cut(s) 33, 65, 236, 278
ScrFI CCNGG 4 cut(s) 173, 178, 236, 299
SduI GDGCHC 3 cut(s) 108, 183, 330
SetI ASST 5 cut(s) 138, 171, 209, 240, 330
SfoI GGCGCC 1 cut(s) 340
SgrAI CRCCGGYG 1 cut(s) 335
SinI GGWCC 2 cut(s) 211, 379
SsiI CCGC 3 cut(s) 144, 246, 417
SspDI GGCGCC 1 cut(s) 338
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 4 cut(s) 171, 176, 234, 297
TaqI TCGA 3 cut(s) 114, 240, 324
TaqII GACCGA 1 cut(s) 116
TauI GCSGC 1 cut(s) 419
TscAI CASTG 2 cut(s) 92, 320
TspRI CASTG 2 cut(s) 92, 320
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 211, 379
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.