Prupe.1G201700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017197
Physical Location & Seq
Forward (+)
19924995 .. 19925857
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G201700.1

Sequence Viewer

Length: 501 bp
ATGGGAATCTCAAGCTCAAAGCGAGTGAAGTCGTCGCTCTCCAACTCGGCCACGTTCGACTCAGCTTGCGACTCGGCCTTCACTCACTGCCTCTCGCTCACTGAGCACGCTTTCCAAGGCGTCTTCCCCTACCAGCTCCCCACAGCCTCCAACCACCTCCACGAAACGCTGCGCACCGTCCACCCGCACCCCCTCATCCTCAAATGGGTCCCATCTCCGCCGAATCGCTCCCGGGTCGACTCGGCCCTCGAGGTCGTGACTCGCTCGCCGCGGGCCCAGACGATCGGGCCGGCTGAGTTCAAGCAGTGGGCGGTGGAGCTCTTCGCCGGAGCTGTGGTGGAGAACGCCAGGAAGGCGGTGATGTGGCGCGTTCCGATTGGCGTGGCTGGGATTGCTGGGGTTGGAGCCGCGACGAGGTCCGGGAAGGAGTTAATTGGGACGGCGATTGGGGTGTACGCGCTTGGCGTTGCGACTTCGATTTCTCTGAGTTTGTCTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.53

Weight (kDa)

9.62

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 248
Acc16I TGCGCA 1 cut(s) 173
AccI GTMKAC 1 cut(s) 237
AccII CGCG 4 cut(s) 271, 369, 410, 458
AciI CCGC 7 cut(s) 185, 218, 269, 271, 311, 356, 408
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 205, 414
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 5 cut(s) 15, 65, 136, 319, 332
AluI AGCT 5 cut(s) 15, 65, 136, 319, 332
Alw21I GWGCWC 2 cut(s) 108, 321
Ama87I CYCGRG 2 cut(s) 231, 248
AoxI GGCC 5 cut(s) 48, 75, 243, 273, 287
ApaI GGGCCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 169
AspLEI GCGC 3 cut(s) 174, 369, 460
AspS9I GGNCC 6 cut(s) 208, 244, 273, 274, 287, 417
AsuC2I CCSGG 3 cut(s) 232, 233, 421
AsuHPI GGTGA 1 cut(s) 370
AvaI CYCGRG 2 cut(s) 231, 248
AvaII GGWCC 2 cut(s) 208, 417
BaeGI GKGCMC 1 cut(s) 277
BanII GRGCYC 2 cut(s) 277, 321
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 108, 321
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 1 cut(s) 349
BcnI CCSGG 3 cut(s) 232, 233, 421
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 3 cut(s) 170, 269, 408
BlsI GCNGC 3 cut(s) 171, 270, 409
Bme1390I CCNGG 4 cut(s) 232, 233, 349, 421
Bme18I GGWCC 2 cut(s) 208, 417
BmeT110I CYCGRG 2 cut(s) 231, 248
BmgT120I GGNCC 6 cut(s) 208, 244, 273, 274, 287, 417
BmiI GGNNCC 4 cut(s) 209, 210, 275, 406
BmrFI CCNGG 4 cut(s) 232, 233, 349, 421
BpiI GAAGAC 1 cut(s) 115
BpuMI CCSGG 3 cut(s) 232, 233, 421
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 115, 231, 269
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 414
Bse118I RCCGGY 1 cut(s) 289
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 3 cut(s) 115, 231, 269
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 205, 414
BseMII CTCAG 4 cut(s) 75, 93, 285, 476
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 156
BseYI CCCAGC 2 cut(s) 386, 395
Bsh1236I CGCG 4 cut(s) 271, 369, 410, 458
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 5 cut(s) 50, 77, 245, 275, 289
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 108, 321
BsiHKCI CYCGRG 2 cut(s) 231, 248
BsiSI CCGG 4 cut(s) 232, 290, 327, 420
BslFI GGGAC 2 cut(s) 194, 451
BslI CCNNNNNNNGG 2 cut(s) 205, 414
BsmFI GGGAC 2 cut(s) 194, 451
BsnI GGCC 5 cut(s) 50, 77, 245, 275, 289
BsoBI CYCGRG 2 cut(s) 231, 248
Bsp120I GGGCCC 1 cut(s) 273
Bsp1286I GDGCHC 3 cut(s) 108, 277, 321
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 7 cut(s) 185, 218, 269, 271, 311, 356, 408
BspANI GGCC 5 cut(s) 50, 77, 245, 275, 289
BspCNI CTCAG 4 cut(s) 74, 94, 286, 477
BspFNI CGCG 4 cut(s) 271, 369, 410, 458
BspLI GGNNCC 4 cut(s) 209, 210, 275, 406
BspQI GCTCTTC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 3 cut(s) 115, 231, 269
BssMI GATC 1 cut(s) 282
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 5 cut(s) 67, 108, 266, 273, 291
BstDEI CTNAG 4 cut(s) 61, 102, 294, 485
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 4 cut(s) 271, 369, 410, 458
BstHHI GCGC 3 cut(s) 174, 369, 460
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 3 cut(s) 103, 353, 392
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 4 cut(s) 230, 231, 347, 419
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 4 cut(s) 271, 369, 410, 458
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 115
BsuRI GGCC 5 cut(s) 50, 77, 245, 275, 289
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 2 cut(s) 85, 311
BtsIMutI CAGTG 3 cut(s) 85, 99, 311
Cac8I GCNNGC 5 cut(s) 67, 108, 266, 273, 291
CfoI GCGC 3 cut(s) 174, 369, 460
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 6 cut(s) 208, 244, 273, 274, 287, 417
Cfr42I CCGCGG 1 cut(s) 272
Cfr9I CCCGGG 1 cut(s) 231
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 454
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 4 cut(s) 61, 102, 294, 485
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EciI GGCGGA 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 115
Eco24I GRGCYC 2 cut(s) 277, 321
Eco47I GGWCC 2 cut(s) 208, 417
Eco53kI GAGCTC 1 cut(s) 319
Eco88I CYCGRG 2 cut(s) 231, 248
EcoICRI GAGCTC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 115
EcoT38I GRGCYC 2 cut(s) 277, 321
ErhI CCWWGG 1 cut(s) 115
FaqI GGGAC 2 cut(s) 194, 451
FauI CCCGC 2 cut(s) 192, 264
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 170, 269, 408
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 2 cut(s) 277, 321
Fsp4HI GCNGC 3 cut(s) 170, 269, 408
FspI TGCGCA 1 cut(s) 173
GlaI GCGC 3 cut(s) 173, 368, 459
GluI GCNGC 3 cut(s) 170, 269, 408
GsaI CCCAGC 2 cut(s) 390, 399
HaeIII GGCC 5 cut(s) 50, 77, 245, 275, 289
HapII CCGG 4 cut(s) 232, 290, 327, 420
HgaI GACGC 1 cut(s) 109
HhaI GCGC 3 cut(s) 174, 369, 460
Hin1I GRCGYC 1 cut(s) 120
Hin6I GCGC 3 cut(s) 172, 367, 458
HinP1I GCGC 3 cut(s) 172, 367, 458
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 6 cut(s) 6, 59, 71, 223, 239, 259
HpaII CCGG 4 cut(s) 232, 290, 327, 420
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 3 cut(s) 181, 238, 454
Hpy188I TCNGA 2 cut(s) 375, 486
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 3 cut(s) 181, 238, 454
Hpy99I CGWCG 2 cut(s) 37, 415
HpyAV CCTTC 3 cut(s) 88, 346, 418
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 353, 392
HpyF3I CTNAG 4 cut(s) 61, 102, 294, 485
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 120
HspAI GCGC 3 cut(s) 172, 367, 458
KflI GGGWCCC 1 cut(s) 208
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
KspI CCGCGG 1 cut(s) 272
Kzo9I GATC 1 cut(s) 282
LguI GCTCTTC 1 cut(s) 326
LmnI GCTCC 5 cut(s) 141, 233, 316, 329, 404
Lsp1109I GCAGC 1 cut(s) 156
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 115, 313
MhlI GDGCHC 3 cut(s) 108, 277, 321
MluCI AATT 1 cut(s) 432
MlyI GAGTC 4 cut(s) 53, 65, 233, 253
MmeI TCCRAC 3 cut(s) 66, 174, 382
MnlI CCTC 8 cut(s) 101, 157, 167, 203, 209, 244, 257, 408
MroNI GCCGGC 1 cut(s) 289
MseI TTAA 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 4 cut(s) 232, 290, 327, 420
MspR9I CCNGG 4 cut(s) 232, 233, 349, 421
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 4 cut(s) 271, 369, 410, 458
MwoI GCNNNNNNNGC 3 cut(s) 103, 353, 392
NaeI GCCGGC 1 cut(s) 291
NciI CCSGG 3 cut(s) 232, 233, 421
NdeII GATC 1 cut(s) 282
NgoMIV GCCGGC 1 cut(s) 289
NlaIV GGNNCC 4 cut(s) 209, 210, 275, 406
NmeAIII GCCGAG 3 cut(s) 26, 53, 221
NmuCI GTSAC 1 cut(s) 256
NsbI TGCGCA 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PdiI GCCGGC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 6, 223
PflFI GACNNNGTC 1 cut(s) 415
PfoI TCCNGGA 1 cut(s) 419
PkrI GCNGC 3 cut(s) 171, 270, 409
Ple19I CGATCG 1 cut(s) 285
PleI GAGTC 4 cut(s) 53, 65, 233, 253
PpsI GAGTC 4 cut(s) 53, 65, 233, 253
PpuMI RGGWCCY 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 347
PspFI CCCAGC 2 cut(s) 386, 395
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 4 cut(s) 209, 210, 275, 406
PspOMI GGGCCC 1 cut(s) 273
PspPI GGNCC 6 cut(s) 208, 244, 273, 274, 287, 417
PspPPI RGGWCCY 1 cut(s) 208
PspXI VCTCGAGB 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 415
PvuI CGATCG 1 cut(s) 285
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SacI GAGCTC 1 cut(s) 321
SacII CCGCGG 1 cut(s) 272
SalI GTCGAC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 3 cut(s) 170, 269, 408
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 6 cut(s) 208, 244, 273, 274, 287, 417
SchI GAGTC 4 cut(s) 53, 65, 233, 253
ScrFI CCNGG 4 cut(s) 232, 233, 349, 421
SduI GDGCHC 3 cut(s) 108, 277, 321
SetI ASST 9 cut(s) 17, 56, 67, 138, 159, 255, 321, 334, 419
Sfr274I CTCGAG 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 272
SgrBI CCGCGG 1 cut(s) 272
SinI GGWCC 2 cut(s) 208, 417
SlaI CTCGAG 1 cut(s) 248
SmaI CCCGGG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 10, 248
SmoI CTYRAG 2 cut(s) 10, 248
Sse9I AATT 1 cut(s) 432
SsiI CCGC 7 cut(s) 185, 218, 269, 271, 311, 356, 408
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 4 cut(s) 230, 231, 347, 419
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 56
TaqI TCGA 4 cut(s) 57, 237, 249, 476
TasI AATT 1 cut(s) 432
TauI GCSGC 2 cut(s) 271, 410
TfiI GAWTC 2 cut(s) 6, 223
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 3 cut(s) 92, 106, 311
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 256
TspMI CCCGGG 1 cut(s) 231
TspRI CASTG 3 cut(s) 92, 106, 311
Tth111I GACNNNGTC 1 cut(s) 415
VpaK11BI GGWCC 2 cut(s) 208, 417
XhoI CTCGAG 1 cut(s) 248
XmaI CCCGGG 1 cut(s) 231
XmiI GTMKAC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.