FvH4_6g31340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017197
Physical Location & Seq
Reverse (-)
24493429 .. 24494499
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31340.t1

Sequence Viewer

Length: 498 bp
ATGGGAATCTCTCCGTCAAAGCGAGTCAAGTCCTCCCTCTCCAACTCGCCCGAGTTCGACTCAGCCTGCACCTCAGCTTTCAGCCACTGCCTCTCTCTCACCGAGCACGGCTTCGACGGCGTCTTCCCCTTCCAGCTCGCCACCGCCTCCGACCACCTCTACCAGACGCTCCGCCACGACTCCTCCCACTCTCTCGTCCTCAAGTGGGTCCCGTCTCCCCCGTCTCGCTCCCAGGTCGACTCCGCTCTCAAGGCCGTCACGCGCTCCGACTCCAACGCCACACTCGGCCCGGCCCAGTTCAAGCAGTGGGCCGTCGAGCTCTTCGCCGGCGCCGTCGTCGCTAACGCCACCAAGGACCTGATGGTTCGGGTCCCGGTCGGCGTGGCCGGGATTGCGGGATTGGGTGCTGCCAGTCGGTCCGGTAAGGACATGGTTGTGATCGCGATTGGGGGTTACGCGCTCGGCGTTGCCACCTCCATTTGGCTCGGTTTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.24

Weight (kDa)

8.66

Isoelectric Point (pI)

57.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 237
AccII CGCG 3 cut(s) 262, 443, 458
AciI CCGC 4 cut(s) 144, 172, 243, 395
AcoI YGGCCR 1 cut(s) 384
AcyI GRCGYC 2 cut(s) 120, 330
AfiI CCNNNNNNNGG 2 cut(s) 205, 480
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 3 cut(s) 77, 136, 319
AluI AGCT 3 cut(s) 77, 136, 319
Alw21I GWGCWC 2 cut(s) 108, 321
Alw26I GTCTC 2 cut(s) 219, 228
AlwNI CAGNNNCTG 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 5 cut(s) 252, 286, 291, 309, 384
ApeKI GCWGC 1 cut(s) 407
AspLEI GCGC 3 cut(s) 264, 332, 460
AspS9I GGNCC 7 cut(s) 208, 287, 292, 309, 355, 370, 417
AsuC2I CCSGG 3 cut(s) 290, 374, 388
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 4 cut(s) 208, 355, 370, 417
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 108, 321
BbvCI CCTCAGC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 394
BccI CCATC 1 cut(s) 355
BceAI ACGGC 5 cut(s) 124, 133, 239, 296, 317
BciT130I CCWGG 1 cut(s) 233
BcnI CCSGG 3 cut(s) 290, 374, 388
BcoDI GTCTC 2 cut(s) 219, 228
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 4 cut(s) 233, 290, 374, 388
Bme18I GGWCC 4 cut(s) 208, 355, 370, 417
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 7 cut(s) 208, 287, 292, 309, 355, 370, 417
BmiI GGNNCC 5 cut(s) 209, 210, 331, 371, 372
BmrFI CCNGG 4 cut(s) 233, 290, 374, 388
BmrI ACTGGG 1 cut(s) 289
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 44, 76
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 2 cut(s) 185, 233
BpuMI CCSGG 3 cut(s) 290, 374, 388
BsaHI GRCGYC 2 cut(s) 120, 330
BsaJI CCNNGG 2 cut(s) 231, 351
BsaWI WCCGGW 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 480
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 295, 411
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 2 cut(s) 231, 351
BseLI CCNNNNNNNGG 2 cut(s) 205, 480
BseMII CTCAG 2 cut(s) 75, 87
BseNI ACTGG 2 cut(s) 295, 411
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 3 cut(s) 262, 443, 458
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 5 cut(s) 254, 288, 293, 311, 386
BshNI GGYRCC 1 cut(s) 329
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 108, 321
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 5 cut(s) 290, 327, 374, 387, 420
BslFI GGGAC 2 cut(s) 194, 356
BslI CCNNNNNNNGG 2 cut(s) 205, 480
BsmAI GTCTC 2 cut(s) 219, 228
BsmBI CGTCTC 2 cut(s) 219, 228
BsmFI GGGAC 2 cut(s) 194, 356
BsnI GGCC 5 cut(s) 254, 288, 293, 311, 386
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 108, 321
Bsp143I GATC 1 cut(s) 438
Bsp68I TCGCGA 1 cut(s) 443
BspACI CCGC 4 cut(s) 144, 172, 243, 395
BspANI GGCC 5 cut(s) 254, 288, 293, 311, 386
BspCNI CTCAG 2 cut(s) 74, 86
BspFNI CGCG 3 cut(s) 262, 443, 458
BspLI GGNNCC 5 cut(s) 209, 210, 331, 371, 372
BspQI GCTCTTC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 295, 411
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 231, 351
BssMI GATC 1 cut(s) 438
BssNI GRCGYC 2 cut(s) 120, 330
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 495
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 2 cut(s) 120, 330
BstC8I GCNNGC 3 cut(s) 67, 138, 328
BstDEI CTNAG 2 cut(s) 61, 73
BstFNI CGCG 3 cut(s) 262, 443, 458
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 3 cut(s) 264, 332, 460
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 2 cut(s) 219, 228
BstMBI GATC 1 cut(s) 438
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 4 cut(s) 117, 251, 338, 392
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 4 cut(s) 231, 288, 372, 386
BstUI CGCG 3 cut(s) 262, 443, 458
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 115
BsuRI GGCC 5 cut(s) 254, 288, 293, 311, 386
BtsI GCAGTG 2 cut(s) 85, 311
BtsIMutI CAGTG 2 cut(s) 85, 311
BtuMI TCGCGA 1 cut(s) 443
Cac8I GCNNGC 3 cut(s) 67, 138, 328
CaiI CAGNNNCTG 1 cut(s) 87
CfoI GCGC 3 cut(s) 264, 332, 460
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 7 cut(s) 208, 287, 292, 309, 355, 370, 417
CpoI CGGWCCG 1 cut(s) 417
CseI GACGC 2 cut(s) 109, 175
CspI CGGWCCG 1 cut(s) 417
CviAII CATG 1 cut(s) 430
DdeI CTNAG 2 cut(s) 61, 73
DinI GGCGCC 1 cut(s) 331
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 321
Eco47I GGWCC 4 cut(s) 208, 355, 370, 417
Eco53kI GAGCTC 1 cut(s) 319
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 319
EcoO109I RGGNCCY 3 cut(s) 208, 355, 370
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 321
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 351
Esp3I CGTCTC 2 cut(s) 219, 228
FaeI CATG 1 cut(s) 433
FaiI YATR 1 cut(s) 431
FaqI GGGAC 2 cut(s) 194, 356
FatI CATG 1 cut(s) 429
FauI CCCGC 1 cut(s) 388
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 408
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 408
GlaI GCGC 3 cut(s) 263, 331, 459
GluI GCNGC 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 5 cut(s) 254, 288, 293, 311, 386
HapII CCGG 5 cut(s) 290, 327, 374, 387, 420
HgaI GACGC 2 cut(s) 109, 175
HhaI GCGC 3 cut(s) 264, 332, 460
Hin1I GRCGYC 2 cut(s) 120, 330
Hin1II CATG 1 cut(s) 433
Hin6I GCGC 3 cut(s) 262, 330, 458
HinP1I GCGC 3 cut(s) 262, 330, 458
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 6 cut(s) 6, 24, 59, 179, 239, 269
HpaII CCGG 5 cut(s) 290, 327, 374, 387, 420
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 238, 491
Hpy188I TCNGA 2 cut(s) 151, 268
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 2 cut(s) 238, 491
Hpy99I CGWCG 4 cut(s) 119, 317, 338, 341
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 251, 338, 392
HpyF3I CTNAG 2 cut(s) 61, 73
Hsp92I GRCGYC 2 cut(s) 120, 330
Hsp92II CATG 1 cut(s) 433
HspAI GCGC 3 cut(s) 262, 330, 458
KasI GGCGCC 1 cut(s) 329
KflI GGGWCCC 2 cut(s) 208, 370
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 438
LguI GCTCTTC 1 cut(s) 326
LmnI GCTCC 3 cut(s) 174, 233, 269
Lsp1109I GCAGC 1 cut(s) 394
MaeIII GTNAC 2 cut(s) 256, 452
MalI GATC 1 cut(s) 440
MbiI CCGCTC 1 cut(s) 245
MboI GATC 1 cut(s) 438
MboII GAAGA 2 cut(s) 115, 313
MhlI GDGCHC 2 cut(s) 108, 321
Mly113I GGCGCC 1 cut(s) 330
MlyI GAGTC 5 cut(s) 33, 53, 173, 233, 263
MmeI TCCRAC 4 cut(s) 66, 174, 291, 297
MnlI CCTC 9 cut(s) 43, 47, 82, 101, 157, 167, 193, 209, 484
MreI CGCCGGCG 1 cut(s) 326
MroNI GCCGGC 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 434
MspI CCGG 5 cut(s) 290, 327, 374, 387, 420
MspR9I CCNGG 4 cut(s) 233, 290, 374, 388
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 3 cut(s) 262, 443, 458
MwoI GCNNNNNNNGC 4 cut(s) 117, 251, 338, 392
NaeI GCCGGC 1 cut(s) 328
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 3 cut(s) 290, 374, 388
NdeII GATC 1 cut(s) 438
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 1 cut(s) 433
NlaIV GGNNCC 5 cut(s) 209, 210, 331, 371, 372
NmeAIII GCCGAG 2 cut(s) 264, 441
NmuCI GTSAC 1 cut(s) 256
NruI TCGCGA 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 462
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 5 cut(s) 32, 53, 173, 233, 263
PluTI GGCGCC 1 cut(s) 333
PpsI GAGTC 5 cut(s) 32, 53, 173, 233, 263
PpuMI RGGWCCY 3 cut(s) 208, 355, 370
Psp124BI GAGCTC 1 cut(s) 321
Psp5II RGGWCCY 3 cut(s) 208, 355, 370
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 5 cut(s) 209, 210, 331, 371, 372
PspPI GGNCC 7 cut(s) 208, 287, 292, 309, 355, 370, 417
PspPPI RGGWCCY 3 cut(s) 208, 355, 370
PstNI CAGNNNCTG 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 119
RruI TCGCGA 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 434
Rsr2I CGGWCCG 1 cut(s) 417
RsrII CGGWCCG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 326
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 7 cut(s) 208, 287, 292, 309, 355, 370, 417
SchI GAGTC 5 cut(s) 33, 53, 173, 233, 263
ScrFI CCNGG 4 cut(s) 233, 290, 374, 388
SduI GDGCHC 2 cut(s) 108, 321
SetI ASST 8 cut(s) 74, 79, 138, 159, 237, 321, 360, 476
SfoI GGCGCC 1 cut(s) 331
SgrAI CRCCGGYG 1 cut(s) 326
SinI GGWCC 4 cut(s) 208, 355, 370, 417
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 200, 248
SmoI CTYRAG 2 cut(s) 200, 248
SsiI CCGC 4 cut(s) 144, 172, 243, 395
SspDI GGCGCC 1 cut(s) 329
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 4 cut(s) 231, 288, 372, 386
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 495
TaqI TCGA 4 cut(s) 57, 114, 237, 315
TaqII GACCGA 1 cut(s) 405
TfiI GAWTC 1 cut(s) 6
TscAI CASTG 2 cut(s) 92, 311
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 256
TspRI CASTG 2 cut(s) 92, 311
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 4 cut(s) 208, 355, 370, 417
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.