Rroxscaffold_2G00106490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017197
Physical Location & Seq
Forward (+)
30101961 .. 30102463
503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106490.1

Sequence Viewer

Length: 456 bp
ATGGGGGTGTCTCCGTCAAAGCGAGTCAAGTCGTCCTTTTCCAACTCGCCCGAGTTCAACTCAGCCTGCGACTCGGCCTTCAGCCACTGCCTCTCTCTGACCGAGCACGGCTTCGACGGCGTCTTCCCCTTCCAGCTCGCCACCGCCTCCGACCATCTCTACCAAACCCTCCAGGCCGGGCCCCACCCCCACCCTCTCATCCTCAGGGCCGTCCCTCGCGAGTCCAAGGCGACGACGACACTCGGCCCCGCCCAGTTCAAGCAGTGGGCCGTCGAGCTCTTCGCCGGCGCCGTCGTCGGCAACGCTCGCAAAGCACTCATGGTTCGGGTCCCCATCGGCGTCGCTGGGATTGCTGGCTTGGGGGCCGCCAGTCGCTCCGGTAAGGACATTGTTGGAACCGCGATTGGGGTGTACGCGCTTGGCGTTGCCACCGCCATCTATCTCGGTTTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.68

Weight (kDa)

9.34

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 3 cut(s) 219, 401, 416
AciI CCGC 5 cut(s) 144, 249, 366, 399, 432
AcuI CTGAAG 1 cut(s) 64
AcyI GRCGYC 3 cut(s) 120, 288, 339
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 405
AgsI TTSAA 2 cut(s) 58, 259
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 136, 277
AluI AGCT 2 cut(s) 136, 277
Alw21I GWGCWC 2 cut(s) 108, 279
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 7 cut(s) 75, 174, 179, 207, 244, 267, 363
ApaI GGGCCC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 290, 418
AspS9I GGNCC 7 cut(s) 179, 180, 207, 245, 267, 328, 363
AsuC2I CCSGG 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 328
AxyI CCTNAGG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 183, 279
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 108, 279
BccI CCATC 3 cut(s) 162, 341, 443
BceAI ACGGC 5 cut(s) 124, 133, 194, 254, 275
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
Bme1390I CCNGG 2 cut(s) 173, 178
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 7 cut(s) 179, 180, 207, 245, 267, 328, 363
BmiI GGNNCC 8 cut(s) 181, 182, 247, 289, 329, 330, 364, 397
BmrFI CCNGG 2 cut(s) 173, 178
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 178
BsaHI GRCGYC 3 cut(s) 120, 288, 339
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 253, 369
Bse21I CCTNAGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 75, 217
BseNI ACTGG 2 cut(s) 253, 369
BseSI GKGCMC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 344
Bsh1236I CGCG 3 cut(s) 219, 401, 416
BshFI GGCC 7 cut(s) 77, 176, 181, 209, 246, 269, 365
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 2 cut(s) 108, 279
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 3 cut(s) 177, 285, 378
BslFI GGGAC 2 cut(s) 197, 314
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 197, 314
BsnI GGCC 7 cut(s) 77, 176, 181, 209, 246, 269, 365
BsoBI CYCGRG 1 cut(s) 50
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 108, 183, 279
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 5 cut(s) 144, 249, 366, 399, 432
BspANI GGCC 7 cut(s) 77, 176, 181, 209, 246, 269, 365
BspCNI CTCAG 2 cut(s) 74, 216
BspFNI CGCG 3 cut(s) 219, 401, 416
BspLI GGNNCC 8 cut(s) 181, 182, 247, 289, 329, 330, 364, 397
BspQI GCTCTTC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 2 cut(s) 253, 369
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 225
BssNI GRCGYC 3 cut(s) 120, 288, 339
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 3 cut(s) 120, 288, 339
BstC8I GCNNGC 5 cut(s) 67, 138, 286, 307, 355
BstDEI CTNAG 2 cut(s) 61, 203
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 3 cut(s) 219, 401, 416
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 2 cut(s) 290, 418
BstMAI GTCTC 1 cut(s) 15
BstMWI GCNNNNNNNGC 4 cut(s) 117, 306, 311, 350
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 171, 176
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 3 cut(s) 219, 401, 416
BstV2I GAAGAC 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 7 cut(s) 77, 176, 181, 209, 246, 269, 365
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 2 cut(s) 85, 269
BtsIMutI CAGTG 2 cut(s) 85, 269
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 5 cut(s) 67, 138, 286, 307, 355
CaiI CAGNNNCTG 1 cut(s) 87
CfoI GCGC 2 cut(s) 290, 418
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 7 cut(s) 179, 180, 207, 245, 267, 328, 363
CseI GACGC 2 cut(s) 109, 328
Csp6I GTAC 1 cut(s) 412
CviAII CATG 1 cut(s) 319
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 61, 203
DinI GGCGCC 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 2 cut(s) 183, 279
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 277
EcoO109I RGGNCCY 2 cut(s) 180, 328
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 2 cut(s) 183, 279
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 322
FaiI YATR 1 cut(s) 320
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 2 cut(s) 197, 314
FatI CATG 1 cut(s) 318
FauI CCCGC 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 2 cut(s) 183, 279
Fsp4HI GCNGC 1 cut(s) 366
GlaI GCGC 2 cut(s) 289, 417
GluI GCNGC 1 cut(s) 366
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 7 cut(s) 77, 176, 181, 209, 246, 269, 365
HapII CCGG 3 cut(s) 177, 285, 378
HgaI GACGC 2 cut(s) 109, 328
HhaI GCGC 2 cut(s) 290, 418
Hin1I GRCGYC 3 cut(s) 120, 288, 339
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 2 cut(s) 288, 416
HinP1I GCGC 2 cut(s) 288, 416
HinfI GANTC 3 cut(s) 24, 71, 221
HpaII CCGG 3 cut(s) 177, 285, 378
Hpy166II GTNNAC 2 cut(s) 412, 449
Hpy188I TCNGA 2 cut(s) 99, 151
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 412, 449
Hpy99I CGWCG 7 cut(s) 119, 235, 238, 275, 296, 299, 344
HpyAV CCTTC 2 cut(s) 88, 139
HpyCH4III ACNGT 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 306, 311, 350
HpyF3I CTNAG 2 cut(s) 61, 203
Hsp92I GRCGYC 3 cut(s) 120, 288, 339
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 2 cut(s) 288, 416
KasI GGCGCC 1 cut(s) 287
KflI GGGWCCC 1 cut(s) 328
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 1 cut(s) 380
MboII GAAGA 2 cut(s) 115, 271
MhlI GDGCHC 3 cut(s) 108, 183, 279
Mly113I GGCGCC 1 cut(s) 288
MlyI GAGTC 3 cut(s) 33, 65, 230
MmeI TCCRAC 3 cut(s) 66, 174, 373
MnlI CCTC 6 cut(s) 101, 157, 179, 204, 212, 225
MreI CGCCGGCG 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 284
MspI CCGG 3 cut(s) 177, 285, 378
MspR9I CCNGG 2 cut(s) 173, 178
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 3 cut(s) 219, 401, 416
MwoI GCNNNNNNNGC 4 cut(s) 117, 306, 311, 350
NaeI GCCGGC 1 cut(s) 286
NarI GGCGCC 1 cut(s) 288
NciI CCSGG 1 cut(s) 178
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 8 cut(s) 181, 182, 247, 289, 329, 330, 364, 397
NmeAIII GCCGAG 2 cut(s) 53, 222
NruI TCGCGA 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 420
PdiI GCCGGC 1 cut(s) 286
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 367
PleI GAGTC 3 cut(s) 32, 65, 229
PluTI GGCGCC 1 cut(s) 291
PpsI GAGTC 3 cut(s) 32, 65, 229
PpuMI RGGWCCY 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 8 cut(s) 181, 182, 247, 289, 329, 330, 364, 397
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 7 cut(s) 179, 180, 207, 245, 267, 328, 363
PspPPI RGGWCCY 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 119
RruI TCGCGA 1 cut(s) 219
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 284
SatI GCNGC 1 cut(s) 366
Sau96I GGNCC 7 cut(s) 179, 180, 207, 245, 267, 328, 363
SchI GAGTC 3 cut(s) 33, 65, 230
ScrFI CCNGG 2 cut(s) 173, 178
SduI GDGCHC 3 cut(s) 108, 183, 279
SetI ASST 2 cut(s) 138, 279
SfoI GGCGCC 1 cut(s) 289
SgrAI CRCCGGYG 1 cut(s) 284
SinI GGWCC 1 cut(s) 328
SsiI CCGC 5 cut(s) 144, 249, 366, 399, 432
SspDI GGCGCC 1 cut(s) 287
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 171, 176
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 114, 273
TaqII GACCGA 1 cut(s) 116
TauI GCSGC 1 cut(s) 368
TscAI CASTG 2 cut(s) 92, 269
TspRI CASTG 2 cut(s) 92, 269
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.