pycom04g04090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0017197
Physical Location & Seq
Forward (+)
3667265 .. 3667753
489 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04090.1

Sequence Viewer

Length: 489 bp
ATGGGAATCTCGGCCTCAAAGCGAGTCAAATCCTCGCTATCCAACTCGCCCGCCTTCGACTCGGCCTTCACTCACTGCCTCTCCCTAACCGAACACGCTTTCGACGGCGTCTTCCCCTACCAGCTCCCCACAGCCTCCGACCACCTCCACAAATCCCTCCACACCCTCCACCCGCACCCTCTCATCCTCAACTGGGTCCCATCTCCCCCGACCCGCTCCCTTGTCGACTCCGCCCTCAAGGCCGTCACTCGTCCCGCCCACGCCCAAACTCTTGGGCCGGCCCAGTTCAAGCAGTGGGCAGTGGAGCTCTTCGCCGGCGCTGTCGTCGAGAATGCAGGGAAGGCCGTGATGTTTCGAGTTCCGATCGGCATCGCCGGGATTGCTGGGATTGGGGCTGCGACTCGGTCCGGTAAAGACTTGGTTGGGGCCGTGATTGGCGTCTACTCACTCGGGGTTGCGGCTTCGATCTTCCTGAGTTTGTCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

16.88

Weight (kDa)

9.52

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 216
AccI GTMKAC 2 cut(s) 225, 441
AciI CCGC 6 cut(s) 51, 173, 214, 231, 255, 458
AcyI GRCGYC 2 cut(s) 108, 438
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 2 cut(s) 124, 307
AluI AGCT 2 cut(s) 124, 307
Alw21I GWGCWC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 7 cut(s) 12, 63, 240, 275, 279, 342, 426
ApeKI GCWGC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 5 cut(s) 196, 275, 280, 405, 426
AsuC2I CCSGG 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 2 cut(s) 196, 405
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 382
BccI CCATC 1 cut(s) 208
BceAI ACGGC 4 cut(s) 121, 227, 329, 413
BcnI CCSGG 1 cut(s) 376
BfoI RGCGCY 1 cut(s) 321
BglI GCCNNNNNGGC 1 cut(s) 239
BisI GCNGC 2 cut(s) 396, 459
BlsI GCNGC 2 cut(s) 397, 460
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 2 cut(s) 196, 405
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 5 cut(s) 196, 275, 280, 405, 426
BmiI GGNNCC 3 cut(s) 197, 198, 427
BmrFI CCNGG 1 cut(s) 376
BmrI ACTGGG 2 cut(s) 202, 277
BmsI GCATC 1 cut(s) 378
BmuI ACTGGG 2 cut(s) 202, 277
BpiI GAAGAC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 368
BsaHI GRCGYC 2 cut(s) 108, 438
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 2 cut(s) 277, 314
Bse1I ACTGG 2 cut(s) 197, 283
Bse8I GATNNNNATC 1 cut(s) 368
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 2 cut(s) 197, 283
BseXI GCAGC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 383
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 7 cut(s) 14, 65, 242, 277, 281, 344, 428
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 4 cut(s) 278, 315, 375, 408
BslFI GGGAC 2 cut(s) 182, 237
BslI CCNNNNNNNGG 1 cut(s) 193
BsmFI GGGAC 2 cut(s) 182, 237
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 7 cut(s) 14, 65, 242, 277, 281, 344, 428
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 363, 465
BspACI CCGC 6 cut(s) 51, 173, 214, 231, 255, 458
BspANI GGCC 7 cut(s) 14, 65, 242, 277, 281, 344, 428
BspCNI CTCAG 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 197, 198, 427
BspQI GCTCTTC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 2 cut(s) 277, 314
BsrI ACTGG 2 cut(s) 197, 283
BssAI RCCGGY 2 cut(s) 277, 314
BssMI GATC 2 cut(s) 363, 465
BssNI GRCGYC 2 cut(s) 108, 438
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 2 cut(s) 108, 438
BstC8I GCNNGC 3 cut(s) 51, 279, 316
BstDEI CTNAG 1 cut(s) 473
BstF5I GGATG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 2 cut(s) 366, 468
BstMBI GATC 2 cut(s) 363, 465
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 3 cut(s) 239, 341, 380
BstSCI CCNGG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 272
BsuRI GGCC 7 cut(s) 14, 65, 242, 277, 281, 344, 428
BtgZI GCGATG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 3 cut(s) 73, 299, 306
BtsIMutI CAGTG 3 cut(s) 73, 299, 306
Cac8I GCNNGC 3 cut(s) 51, 279, 316
CfoI GCGC 1 cut(s) 320
Cfr10I RCCGGY 2 cut(s) 277, 314
Cfr13I GGNCC 5 cut(s) 196, 275, 280, 405, 426
CpoI CGGWCCG 1 cut(s) 405
CseI GACGC 2 cut(s) 97, 427
CspI CGGWCCG 1 cut(s) 405
DdeI CTNAG 1 cut(s) 473
DpnI GATC 2 cut(s) 365, 467
DpnII GATC 2 cut(s) 363, 465
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
EciI GGCGGA 1 cut(s) 220
Ecl136II GAGCTC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 196, 405
Eco53kI GAGCTC 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 309
FaqI GGGAC 2 cut(s) 182, 237
FauI CCCGC 4 cut(s) 58, 180, 221, 262
FblI GTMKAC 2 cut(s) 225, 441
Fnu4HI GCNGC 2 cut(s) 396, 459
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 309
FseI GGCCGGCC 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 396, 459
GlaI GCGC 1 cut(s) 319
GluI GCNGC 2 cut(s) 396, 459
GsaI CCCAGC 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 7 cut(s) 14, 65, 242, 277, 281, 344, 428
HapII CCGG 4 cut(s) 278, 315, 375, 408
HgaI GACGC 2 cut(s) 97, 427
HhaI GCGC 1 cut(s) 320
Hin1I GRCGYC 2 cut(s) 108, 438
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 5 cut(s) 6, 24, 59, 227, 400
HpaII CCGG 4 cut(s) 278, 315, 375, 408
Hpy166II GTNNAC 2 cut(s) 226, 442
Hpy188I TCNGA 2 cut(s) 139, 363
Hpy188III TCNNGA 3 cut(s) 328, 472, 483
Hpy8I GTNNAC 2 cut(s) 226, 442
Hpy99I CGWCG 2 cut(s) 107, 329
HpyAV CCTTC 3 cut(s) 64, 76, 334
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 341, 380
HpyF3I CTNAG 1 cut(s) 473
Hsp92I GRCGYC 2 cut(s) 108, 438
HspAI GCGC 1 cut(s) 318
KflI GGGWCCC 1 cut(s) 196
KroI GCCGGC 2 cut(s) 277, 314
KroNI GCCGGC 2 cut(s) 279, 316
Kzo9I GATC 2 cut(s) 363, 465
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 3 cut(s) 129, 221, 304
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 365, 467
MbiI CCGCTC 1 cut(s) 216
MboI GATC 2 cut(s) 363, 465
MboII GAAGA 3 cut(s) 103, 301, 460
MhlI GDGCHC 1 cut(s) 309
MlyI GAGTC 4 cut(s) 33, 53, 221, 394
MmeI TCCRAC 2 cut(s) 66, 162
MreI CGCCGGCG 1 cut(s) 314
MroNI GCCGGC 2 cut(s) 277, 314
MspI CCGG 4 cut(s) 278, 315, 375, 408
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 3 cut(s) 239, 341, 380
NaeI GCCGGC 2 cut(s) 279, 316
NciI CCSGG 1 cut(s) 376
NdeII GATC 2 cut(s) 363, 465
NgoMIV GCCGGC 2 cut(s) 277, 314
NlaIV GGNNCC 3 cut(s) 197, 198, 427
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 314
PctI GAATGC 1 cut(s) 337
PdiI GCCGGC 2 cut(s) 279, 316
PfeI GAWTC 1 cut(s) 6
PflFI GACNNNGTC 2 cut(s) 107, 403
PkrI GCNGC 2 cut(s) 397, 460
Ple19I CGATCG 1 cut(s) 366
PleI GAGTC 4 cut(s) 32, 53, 221, 394
PpsI GAGTC 4 cut(s) 32, 53, 221, 394
PpuMI RGGWCCY 1 cut(s) 196
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 383
PspN4I GGNNCC 3 cut(s) 197, 198, 427
PspPI GGNCC 5 cut(s) 196, 275, 280, 405, 426
PspPPI RGGWCCY 1 cut(s) 196
PsyI GACNNNGTC 2 cut(s) 107, 403
PvuI CGATCG 1 cut(s) 366
RigI GGCCGGCC 1 cut(s) 281
Rsr2I CGGWCCG 1 cut(s) 405
RsrII CGGWCCG 1 cut(s) 405
SacI GAGCTC 1 cut(s) 309
SalI GTCGAC 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 314
SatI GCNGC 2 cut(s) 396, 459
Sau3AI GATC 2 cut(s) 363, 465
Sau96I GGNCC 5 cut(s) 196, 275, 280, 405, 426
SchI GAGTC 4 cut(s) 33, 53, 221, 394
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 309
SetI ASST 3 cut(s) 126, 147, 309
SfaNI GCATC 1 cut(s) 378
SgrAI CRCCGGYG 1 cut(s) 314
SinI GGWCC 2 cut(s) 196, 405
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 6 cut(s) 51, 173, 214, 231, 255, 458
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 374
TaqI TCGA 6 cut(s) 57, 102, 225, 327, 355, 464
TaqII GACCGA 1 cut(s) 393
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 1 cut(s) 6
TscAI CASTG 3 cut(s) 80, 299, 306
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 3 cut(s) 80, 299, 306
Tth111I GACNNNGTC 2 cut(s) 107, 403
VpaK11BI GGWCC 2 cut(s) 196, 405
XmiI GTMKAC 2 cut(s) 225, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.