RchiOBHm_Chr2g0138101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017197
Physical Location & Seq
Reverse (-)
55878424 .. 55879027
604 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50881

Sequence Viewer

Length: 513 bp
ATGGGGGTGTCTCCGTCAAAGCGAGTCAAGTCGTCCTTTTCCAACTCGCCCGAGTTCAACTCAGCCTGCGACTCGGCCTTCAGCCACTGCCTCTCTCTGACCGAGCACGGCTTCGACGGCGTCTTCCCCTTCCAGCTCGCCACCGCCTCCGACCATCTCTACCAAACCCTCCAGGCCGGGCCCCACCCCCACCCTCTCATCCTCAGGTGGGTCCCTTCTCCCCCGACTCGCTCCCAGGTCGACTCCGCTCTCAGGGCCGTCCCTCGCGAGTCCAAGGCGACGACGACGACGACGACACTCGGCCCGGCCCAGTTCAAGCAGTGGGCCGTCGAGCTCTTCGCCGGCGCCGTCGTCTGCAACGCTCGCCAAGCACTCATGGTTCGGGTCCCCATCGGCGTCGCTGGGATTGCTGGCTTGGGGGCCGCCAGTCGCTCCGGTAAGGACATTGTTGGAACCGCGATTGGGGTGTACGCGCTTGGCGTTGCCACCGCCATTTATCTCGGTTTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

17.81

Weight (kDa)

9.22

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43540
fragaria_vesca FvH4_6g31340
malus_domestica MD04G1047100.v1.1
prunus_persica Prupe.1G201700_v2.0.a1
pyrus_communis pycom04g04090
rosa_chinensis RchiOBHm_Chr2g0138101
rosa_laevigata RLG00000019725
rosa_multiflora Rmu_sc0004576.1_g000001 Rmu_sc0019944.1_g000001
rosa_roxburghii Rroxscaffold_2G00106490
rosa_rugosa Rorug02G0349600
rosa_wichuraiana Rw2G032350 Rw2G032400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 240
AccII CGCG 3 cut(s) 267, 458, 473
AciI CCGC 5 cut(s) 144, 246, 423, 456, 489
AcuI CTGAAG 1 cut(s) 64
AcyI GRCGYC 3 cut(s) 120, 345, 396
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 3 cut(s) 208, 252, 462
AgsI TTSAA 2 cut(s) 58, 316
AjnI CCWGG 2 cut(s) 171, 234
AluBI AGCT 2 cut(s) 136, 334
AluI AGCT 2 cut(s) 136, 334
Alw21I GWGCWC 2 cut(s) 108, 336
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 8 cut(s) 75, 174, 179, 255, 301, 306, 324, 420
ApaI GGGCCC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 347, 475
AspS9I GGNCC 9 cut(s) 179, 180, 211, 255, 302, 307, 324, 385, 420
AsuC2I CCSGG 2 cut(s) 178, 305
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 2 cut(s) 211, 385
AxyI CCTNAGG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 2 cut(s) 183, 336
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 108, 336
BccI CCATC 2 cut(s) 162, 398
BceAI ACGGC 5 cut(s) 124, 133, 242, 311, 332
BciT130I CCWGG 2 cut(s) 173, 236
BcnI CCSGG 2 cut(s) 178, 305
BcoDI GTCTC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 348
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 4 cut(s) 173, 178, 236, 305
Bme18I GGWCC 2 cut(s) 211, 385
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 9 cut(s) 179, 180, 211, 255, 302, 307, 324, 385, 420
BmiI GGNNCC 9 cut(s) 181, 182, 212, 213, 346, 386, 387, 421, 454
BmrFI CCNGG 4 cut(s) 173, 178, 236, 305
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 178, 305
BsaHI GRCGYC 3 cut(s) 120, 345, 396
BsaJI CCNNGG 2 cut(s) 234, 273
BsaWI WCCGGW 1 cut(s) 434
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 252, 462
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 310, 426
Bse21I CCTNAGG 1 cut(s) 203
BseBI CCWGG 2 cut(s) 173, 236
BseDI CCNNGG 2 cut(s) 234, 273
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 208, 252, 462
BseMII CTCAG 3 cut(s) 75, 217, 265
BseNI ACTGG 2 cut(s) 310, 426
BseSI GKGCMC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 401
Bsh1236I CGCG 3 cut(s) 267, 458, 473
BshFI GGCC 8 cut(s) 77, 176, 181, 257, 303, 308, 326, 422
BshNI GGYRCC 1 cut(s) 344
BsiHKAI GWGCWC 2 cut(s) 108, 336
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 4 cut(s) 177, 305, 342, 435
BslFI GGGAC 3 cut(s) 197, 245, 371
BslI CCNNNNNNNGG 3 cut(s) 208, 252, 462
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 3 cut(s) 197, 245, 371
BsnI GGCC 8 cut(s) 77, 176, 181, 257, 303, 308, 326, 422
BsoBI CYCGRG 1 cut(s) 50
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 108, 183, 336
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 5 cut(s) 144, 246, 423, 456, 489
BspANI GGCC 8 cut(s) 77, 176, 181, 257, 303, 308, 326, 422
BspCNI CTCAG 3 cut(s) 74, 216, 264
BspFNI CGCG 3 cut(s) 267, 458, 473
BspLI GGNNCC 9 cut(s) 181, 182, 212, 213, 346, 386, 387, 421, 454
BspQI GCTCTTC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 2 cut(s) 310, 426
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 234, 273
BssNI GRCGYC 3 cut(s) 120, 345, 396
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 173, 236
Bst4CI ACNGT 1 cut(s) 510
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 3 cut(s) 120, 345, 396
BstC8I GCNNGC 5 cut(s) 67, 138, 343, 364, 412
BstDEI CTNAG 3 cut(s) 61, 203, 251
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 3 cut(s) 267, 458, 473
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 2 cut(s) 347, 475
BstMAI GTCTC 1 cut(s) 15
BstMWI GCNNNNNNNGC 5 cut(s) 117, 254, 363, 368, 407
BstNI CCWGG 2 cut(s) 173, 236
BstSCI CCNGG 4 cut(s) 171, 176, 234, 303
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 3 cut(s) 267, 458, 473
BstV2I GAAGAC 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 8 cut(s) 77, 176, 181, 257, 303, 308, 326, 422
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 2 cut(s) 85, 326
BtsIMutI CAGTG 2 cut(s) 85, 326
BtuMI TCGCGA 1 cut(s) 267
Cac8I GCNNGC 5 cut(s) 67, 138, 343, 364, 412
CaiI CAGNNNCTG 1 cut(s) 87
CfoI GCGC 2 cut(s) 347, 475
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 9 cut(s) 179, 180, 211, 255, 302, 307, 324, 385, 420
CseI GACGC 2 cut(s) 109, 385
Csp6I GTAC 1 cut(s) 469
CviAII CATG 1 cut(s) 376
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 3 cut(s) 61, 203, 251
DinI GGCGCC 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 2 cut(s) 183, 336
Eco47I GGWCC 2 cut(s) 211, 385
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 3 cut(s) 180, 211, 385
EcoRII CCWGG 2 cut(s) 171, 234
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 2 cut(s) 183, 336
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 379
FaiI YATR 1 cut(s) 377
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 3 cut(s) 197, 245, 371
FatI CATG 1 cut(s) 375
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 2 cut(s) 183, 336
Fsp4HI GCNGC 1 cut(s) 423
GlaI GCGC 2 cut(s) 346, 474
GluI GCNGC 1 cut(s) 423
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 8 cut(s) 77, 176, 181, 257, 303, 308, 326, 422
HapII CCGG 4 cut(s) 177, 305, 342, 435
HgaI GACGC 2 cut(s) 109, 385
HhaI GCGC 2 cut(s) 347, 475
Hin1I GRCGYC 3 cut(s) 120, 345, 396
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 2 cut(s) 345, 473
HinP1I GCGC 2 cut(s) 345, 473
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 5 cut(s) 24, 71, 226, 242, 269
HpaII CCGG 4 cut(s) 177, 305, 342, 435
Hpy166II GTNNAC 3 cut(s) 241, 469, 506
Hpy188I TCNGA 2 cut(s) 99, 151
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 3 cut(s) 241, 469, 506
Hpy99I CGWCG 9 cut(s) 119, 283, 286, 289, 292, 295, 332, 353, 401
HpyAV CCTTC 3 cut(s) 88, 139, 225
HpyCH4III ACNGT 1 cut(s) 510
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 254, 363, 368, 407
HpyF3I CTNAG 3 cut(s) 61, 203, 251
Hsp92I GRCGYC 3 cut(s) 120, 345, 396
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 2 cut(s) 345, 473
KasI GGCGCC 1 cut(s) 344
KflI GGGWCCC 2 cut(s) 211, 385
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 2 cut(s) 236, 437
MbiI CCGCTC 1 cut(s) 248
MboII GAAGA 2 cut(s) 115, 328
MhlI GDGCHC 3 cut(s) 108, 183, 336
Mly113I GGCGCC 1 cut(s) 345
MlyI GAGTC 5 cut(s) 33, 65, 220, 236, 278
MmeI TCCRAC 3 cut(s) 66, 174, 430
MnlI CCTC 6 cut(s) 101, 157, 179, 204, 212, 273
MreI CGCCGGCG 1 cut(s) 341
MroNI GCCGGC 1 cut(s) 341
MspI CCGG 4 cut(s) 177, 305, 342, 435
MspR9I CCNGG 4 cut(s) 173, 178, 236, 305
MvaI CCWGG 2 cut(s) 173, 236
MvnI CGCG 3 cut(s) 267, 458, 473
MwoI GCNNNNNNNGC 5 cut(s) 117, 254, 363, 368, 407
NaeI GCCGGC 1 cut(s) 343
NarI GGCGCC 1 cut(s) 345
NciI CCSGG 2 cut(s) 178, 305
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 9 cut(s) 181, 182, 212, 213, 346, 386, 387, 421, 454
NmeAIII GCCGAG 2 cut(s) 53, 279
NruI TCGCGA 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 4 cut(s) 287, 290, 345, 477
PdiI GCCGGC 1 cut(s) 343
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 5 cut(s) 32, 65, 220, 236, 277
PluTI GGCGCC 1 cut(s) 348
PpsI GAGTC 5 cut(s) 32, 65, 220, 236, 277
PpuMI RGGWCCY 2 cut(s) 211, 385
Psp124BI GAGCTC 1 cut(s) 336
Psp5II RGGWCCY 2 cut(s) 211, 385
Psp6I CCWGG 2 cut(s) 171, 234
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 2 cut(s) 171, 234
PspN4I GGNNCC 9 cut(s) 181, 182, 212, 213, 346, 386, 387, 421, 454
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 9 cut(s) 179, 180, 211, 255, 302, 307, 324, 385, 420
PspPPI RGGWCCY 2 cut(s) 211, 385
PstNI CAGNNNCTG 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 119
RruI TCGCGA 1 cut(s) 267
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
SacI GAGCTC 1 cut(s) 336
SalI GTCGAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 341
SatI GCNGC 1 cut(s) 423
Sau96I GGNCC 9 cut(s) 179, 180, 211, 255, 302, 307, 324, 385, 420
SchI GAGTC 5 cut(s) 33, 65, 220, 236, 278
ScrFI CCNGG 4 cut(s) 173, 178, 236, 305
SduI GDGCHC 3 cut(s) 108, 183, 336
SetI ASST 4 cut(s) 138, 209, 240, 336
SfoI GGCGCC 1 cut(s) 346
SgrAI CRCCGGYG 1 cut(s) 341
SinI GGWCC 2 cut(s) 211, 385
SsiI CCGC 5 cut(s) 144, 246, 423, 456, 489
SspDI GGCGCC 1 cut(s) 344
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 4 cut(s) 171, 176, 234, 303
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 510
TaqI TCGA 3 cut(s) 114, 240, 330
TaqII GACCGA 1 cut(s) 116
TauI GCSGC 1 cut(s) 425
TscAI CASTG 2 cut(s) 92, 326
TspRI CASTG 2 cut(s) 92, 326
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 211, 385
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.