Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007395

Physical Location & Seq

Genomic Coordinates Reverse (-)

18073859 .. 18075498

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCAGCTTCTTCTCCATCTCTCCTTCTACCACTAGGTTCAGCATCTAGAAATGGTCTAACCACCAAGAATCCAAATTCATCAAGATATATAGCTGCAAGAGTCATAGCTTCAGAAACAAGAGAGCAAAGCTGTAAAATCAGTAATCTCTCTAGCCGTAGAGAAGCAATGCTTTTGGTACTCGGCGTCTCAGGAGGATTATCAATGAGCTCACTTGCGGCGTATGCAGCTGGTTTACCTCCAGAAGATAAACCAAGACTCTGTGAAGCAGAATGCGAGAAAGAGCTTGAAAATGTTCCAATGGTAACTACAGAGTCAGGGCTTCAGTATAAGGATATTAAAGTTGGTAGAGGCCCGAGTCCACCGGTTGGTTTTCAGGTTGCTGCTAATTATGTGGCTATGGTTCCATCAGGGCAAATATTCGACAGTTCTCTGGAGAAAGGTCTACCGTATCTATTTCGCGTTGGCTCTGGCCAGGTGATCAAAGGACTTGATGAAGGAATCTTGAGTATGAAAGCTGGTGGCAAACGTAGACTCTACATCCCAGGGCCTTTGGCGTTTCCAAAGGGTCTAGTTTCAGCTCCAGGGAGGCCGAGAGTTGCGCCAAACAGCCCGGTGATATTTGACGTGAGCTTAGAGTTCATACCAGGTCTCGATTCAGAGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

223

Amino Acids

23.56

Weight (kDa)

8.41

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	65 - 156	1.5e-21	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43560 AT2G43560
fragaria_vesca	FvH4_4g10650 FvH4_4g10650 FvH4_4g10650
prunus_persica	Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1
pyrus_communis	pycom04g04130
rosa_chinensis	RchiOBHm_Chr4g0406301
rosa_laevigata	RLG00000008778
rosa_multiflora	Rmu_sc0007014.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351040
rosa_rugosa	Rorug04G0067900 Rorug04G0067900
rosa_samantha	Rh4AG137100 Rh4BG134700 Rh4CG145300 Rh4DG132000
rosa_wichuraiana	Rw0G006870 Rw4G011130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccI	GTMKAC	2 cut(s)	445, 532
AccII	CGCG	1 cut(s)	462
AciI	CCGC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	2 cut(s)	96, 308
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgeI	ACCGGT	1 cut(s)	364
AgsI	TTSAA	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	628
AjnI	CCWGG	4 cut(s)	474, 544, 583, 646
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	2 cut(s)	193, 656
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	4 cut(s)	352, 472, 548, 590
ApeKI	GCWGC	4 cut(s)	5, 95, 227, 383
ApoI	RAATTY	1 cut(s)	76
AsiGI	ACCGGT	1 cut(s)	364
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	353, 548
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	490, 628
AvaI	CYCGRG	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	4 cut(s)	17, 82, 239, 370
BccI	CCATC	2 cut(s)	25, 415
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	4 cut(s)	476, 546, 585, 648
BclI	TGATCA	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	2 cut(s)	193, 656
BfaI	CTAG	4 cut(s)	35, 48, 153, 572
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	5 cut(s)	6, 96, 219, 228, 384
BlsI	GCNGC	5 cut(s)	7, 97, 220, 229, 385
Bme1390I	CCNGG	5 cut(s)	476, 546, 585, 614, 648
BmeT110I	CYCGRG	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	353, 548
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	5 cut(s)	476, 546, 585, 614, 648
BmsI	GCATC	1 cut(s)	53
BpmI	CTGGAG	3 cut(s)	225, 455, 567
BpuEI	CTTGAG	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	3 cut(s)	544, 545, 584
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	4 cut(s)	476, 546, 585, 648
BseDI	CCNNGG	3 cut(s)	544, 545, 584
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	4 cut(s)	17, 82, 239, 370
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	4 cut(s)	354, 474, 550, 592
BshTI	ACCGGT	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	365, 614
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	193, 656
BsmBI	CGTCTC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	4 cut(s)	354, 474, 550, 592
Bso31I	GGTCTC	1 cut(s)	656
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	4 cut(s)	354, 474, 550, 592
BspCNI	CTCAG	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	544, 545, 584
BssMI	GATC	1 cut(s)	480
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	4 cut(s)	476, 546, 585, 648
Bst4CI	ACNGT	2 cut(s)	428, 450
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	190, 634
BstF5I	GGATG	1 cut(s)	540
BstFNI	CGCG	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	2 cut(s)	193, 656
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 227
BstNI	CCWGG	4 cut(s)	476, 546, 585, 648
BstSCI	CCNGG	5 cut(s)	474, 544, 583, 612, 646
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	4 cut(s)	17, 82, 239, 370
BsuRI	GGCC	4 cut(s)	354, 474, 550, 592
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	1 cut(s)	540
CfoI	GCGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	353, 548
CseI	GACGC	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	646
Csp6I	GTAC	1 cut(s)	179
CspAI	ACCGGT	1 cut(s)	364
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	2 cut(s)	190, 634
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	656
Eco53kI	GAGCTC	1 cut(s)	210
Eco57I	CTGAAG	2 cut(s)	96, 308
Eco88I	CYCGRG	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	4 cut(s)	474, 544, 583, 646
EcoT38I	GRGCYC	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	193
FaiI	YATR	9 cut(s)	90, 92, 107, 225, 330, 393, 401, 512, 644
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FbaI	TGATCA	1 cut(s)	480
FblI	GTMKAC	2 cut(s)	445, 532
Fnu4HI	GCNGC	5 cut(s)	6, 96, 219, 228, 384
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	5 cut(s)	6, 96, 219, 228, 384
FspBI	CTAG	4 cut(s)	35, 48, 153, 572
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	5 cut(s)	6, 96, 219, 228, 384
GsuI	CTGGAG	3 cut(s)	225, 455, 567
HaeIII	GGCC	4 cut(s)	354, 474, 550, 592
HapII	CCGG	2 cut(s)	365, 614
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	604
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	8 cut(s)	70, 102, 258, 314, 358, 501, 534, 656
HpaII	CCGG	2 cut(s)	365, 614
HphI	GGTGA	2 cut(s)	490, 628
Hpy166II	GTNNAC	4 cut(s)	236, 362, 446, 533
Hpy188I	TCNGA	2 cut(s)	115, 661
Hpy188III	TCNNGA	7 cut(s)	48, 84, 192, 242, 434, 505, 653
Hpy8I	GTNNAC	4 cut(s)	236, 362, 446, 533
HpyAV	CCTTC	2 cut(s)	35, 491
HpyCH4III	ACNGT	2 cut(s)	428, 450
HpyCH4IV	ACGT	2 cut(s)	529, 627
HpyCH4V	TGCA	2 cut(s)	98, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 227
HpyF3I	CTNAG	2 cut(s)	190, 634
HpySE526I	ACGT	2 cut(s)	529, 627
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	1 cut(s)	602
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	4 cut(s)	17, 82, 239, 370
LweI	GCATC	1 cut(s)	53
MabI	ACCWGGT	1 cut(s)	646
MaeI	CTAG	4 cut(s)	35, 48, 153, 572
MaeII	ACGT	2 cut(s)	529, 627
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	2 cut(s)	3, 257
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	2 cut(s)	76, 388
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	5 cut(s)	111, 252, 323, 367, 528
MnlI	CCTC	5 cut(s)	188, 249, 344, 582, 655
Mox20I	TGGCCA	1 cut(s)	474
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	365, 614
MspR9I	CCNGG	5 cut(s)	476, 546, 585, 614, 648
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	4 cut(s)	476, 546, 585, 648
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	224, 227
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	1 cut(s)	480
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	2 cut(s)	162, 618
PasI	CCCWGGG	1 cut(s)	545
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	70, 501, 656
PflMI	CCANNNNNTGG	1 cut(s)	368
PinAI	ACCGGT	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	7, 97, 220, 229, 385
PleI	GAGTC	5 cut(s)	110, 252, 322, 366, 528
PpsI	GAGTC	5 cut(s)	110, 252, 322, 366, 528
Psp124BI	GAGCTC	1 cut(s)	212
Psp6I	CCWGG	4 cut(s)	474, 544, 583, 646
PspGI	CCWGG	4 cut(s)	474, 544, 583, 646
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	353, 548
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	5 cut(s)	6, 96, 219, 228, 384
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	2 cut(s)	353, 548
SchI	GAGTC	5 cut(s)	111, 252, 323, 367, 528
ScrFI	CCNGG	5 cut(s)	476, 546, 585, 614, 648
SduI	GDGCHC	1 cut(s)	212
SexAI	ACCWGGT	1 cut(s)	646
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	2 cut(s)	76, 388
SsiI	CCGC	1 cut(s)	218
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	4 cut(s)	35, 48, 153, 572
SstI	GAGCTC	1 cut(s)	212
StyD4I	CCNGG	5 cut(s)	474, 544, 583, 612, 646
TaaI	ACNGT	2 cut(s)	428, 450
TaiI	ACGT	2 cut(s)	532, 630
TaqI	TCGA	2 cut(s)	423, 654
TasI	AATT	2 cut(s)	76, 388
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	3 cut(s)	70, 501, 656
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	4 cut(s)	5, 95, 227, 383
TspDTI	ATGAA	4 cut(s)	69, 510, 527, 631
Van91I	CCANNNNNTGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	47
XmiI	GTMKAC	2 cut(s)	445, 532
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	4 cut(s)	35, 48, 153, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.