Rroxscaffold_5G00351040

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007395
Physical Location & Seq
Forward (+)
25873584 .. 25878527
4944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351040.1

Sequence Viewer

Length: 696 bp
ATGGCCACAGCGTTGCCCATGGCATCGACTTCCAGTCTCACTCTCAGTAGACGTCCACCTTTCTTGGGTTCATATTCTGGAAAGAGCACCATGCCTGCAAATTATCAAGGCATTTGCTGTCTCAATAATTCACAACTTTGTACAACCACAAGAGGATACAAGGATGACATTAATCTAATCAAACGGAGACAGATGATTGCCTTCCTTTTTGGTTTTTCAAGCTTTGTCTTAGACTCTTTTCAAGCCGAGGGAGCTGGCTTGCCCCCTGAAGAAAAGCCTCGACTATGTGATGATTCTTGCGAAAAACAGCTAGAAAATGTCCCTATGGTAACTACAGAGTCTGGTTTGCAGTATAAGGATATTAAAGTTGGTCAAGGCCCCAGTCCACCTGTCGGTTTTCAGGTGGCGGCGAATTATGTTGCCATGGTTCCGTCTGGACAAATATTTGACAGTTCATTGGAGAAGGGTCAACTTTATATATTCCGTGTTGGCTCTGGTCAGGTGATCAAAGGACTTGACGAAGGGATCTTGACCATGAAAATAGGAGGGAAGCGGCGACTCTACATCCCGGGATCTTTGGCCTTTCCCAAGGGTCTCAGTTCAGCTCCAGGAAGGCCAAGGGTGGCTCCAAGTAGTCCAGTGGTTTTCGATGTGAGTTTGGAATACGTACCAGGCCTTGAAATTGAGGAAGAGTGA

Protein Analysis

231

Amino Acids

24.96

Weight (kDa)

7.54

Isoelectric Point (pI)

61.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 129 - 220 4.7e-20 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 49
AciI CCGC 2 cut(s) 407, 553
AclWI GGATC 2 cut(s) 533, 580
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 2 cut(s) 142, 669
AfiI CCNNNNNNNGG 2 cut(s) 65, 392
AgsI TTSAA 3 cut(s) 219, 242, 680
AhdI GACNNNNNGTC 1 cut(s) 33
AjnI CCWGG 2 cut(s) 607, 670
AluBI AGCT 4 cut(s) 222, 254, 310, 605
AluI AGCT 4 cut(s) 222, 254, 310, 605
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 4 cut(s) 41, 125, 181, 599
AlwI GGATC 2 cut(s) 533, 580
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 5 cut(s) 3, 376, 579, 614, 673
AseI ATTAAT 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 377
AsuC2I CCSGG 2 cut(s) 569, 570
AsuHPI GGTGA 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 568
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 609, 672
BciVI GTATCC 1 cut(s) 149
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 2 cut(s) 569, 570
BcoDI GTCTC 4 cut(s) 41, 125, 181, 599
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 149
BisI GCNGC 2 cut(s) 408, 554
BlsI GCNGC 2 cut(s) 409, 555
Bme1390I CCNGG 4 cut(s) 569, 570, 609, 672
BmeRI GACNNNNNGTC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 3 cut(s) 379, 429, 627
BmrFI CCNGG 4 cut(s) 569, 570, 609, 672
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 591
BpuMI CCSGG 2 cut(s) 569, 570
BsaAI YACGTR 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 392
Bse1I ACTGG 3 cut(s) 33, 381, 638
BseBI CCWGG 2 cut(s) 609, 672
BseDI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
BseGI GGATG 2 cut(s) 169, 564
BseLI CCNNNNNNNGG 2 cut(s) 65, 392
BseMII CTCAG 2 cut(s) 58, 610
BseNI ACTGG 3 cut(s) 33, 381, 638
BshFI GGCC 5 cut(s) 5, 378, 581, 616, 675
BsiHKAI GWGCWC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 65, 392
BsmAI GTCTC 4 cut(s) 41, 125, 181, 599
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 5 cut(s) 5, 378, 581, 616, 675
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 3 cut(s) 504, 525, 572
Bsp19I CCATGG 2 cut(s) 18, 423
BspACI CCGC 2 cut(s) 407, 553
BspANI GGCC 5 cut(s) 5, 378, 581, 616, 675
BspCNI CTCAG 2 cut(s) 57, 609
BspLI GGNNCC 3 cut(s) 379, 429, 627
BspPI GGATC 2 cut(s) 533, 580
BspTNI GGTCTC 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 3 cut(s) 33, 381, 638
BssECI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
BssMI GATC 3 cut(s) 504, 525, 572
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 4 cut(s) 18, 423, 588, 617
Bst2UI CCWGG 2 cut(s) 609, 672
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 3 cut(s) 96, 256, 260
BstDEI CTNAG 3 cut(s) 44, 229, 596
BstDSI CCRYGG 2 cut(s) 18, 423
BstF5I GGATG 2 cut(s) 169, 564
BstKTI GATC 3 cut(s) 507, 528, 575
BstMAI GTCTC 4 cut(s) 41, 125, 181, 599
BstMBI GATC 3 cut(s) 504, 525, 572
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 609, 672
BstSCI CCNGG 4 cut(s) 567, 568, 607, 670
BstSFI CTRYAG 1 cut(s) 333
BstSNI TACGTA 1 cut(s) 667
BstX2I RGATCY 2 cut(s) 525, 572
BstYI RGATCY 2 cut(s) 525, 572
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 5 cut(s) 5, 378, 581, 616, 675
BtgI CCRYGG 2 cut(s) 18, 423
BtsCI GGATG 2 cut(s) 169, 564
BtsIMutI CAGTG 1 cut(s) 645
Cac8I GCNNGC 3 cut(s) 96, 256, 260
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 377
Cfr9I CCCGGG 1 cut(s) 568
Csp6I GTAC 2 cut(s) 141, 668
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 4 cut(s) 19, 91, 424, 535
CviQI GTAC 2 cut(s) 141, 668
DdeI CTNAG 3 cut(s) 44, 229, 596
DpnI GATC 3 cut(s) 506, 527, 574
DpnII GATC 3 cut(s) 504, 525, 572
DriI GACNNNNNGTC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 684
Eam1105I GACNNNNNGTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 684
Eco105I TACGTA 1 cut(s) 667
Eco130I CCWWGG 4 cut(s) 18, 423, 588, 617
Eco147I AGGCCT 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 607, 670
EcoT14I CCWWGG 4 cut(s) 18, 423, 588, 617
ErhI CCWWGG 4 cut(s) 18, 423, 588, 617
FaeI CATG 4 cut(s) 22, 94, 427, 538
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 18, 90, 423, 534
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 408, 554
FokI GGATG 2 cut(s) 176, 551
Fsp4HI GCNGC 2 cut(s) 408, 554
FspBI CTAG 1 cut(s) 311
GluI GCNGC 2 cut(s) 408, 554
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 5 cut(s) 5, 378, 581, 616, 675
HapII CCGG 1 cut(s) 569
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 4 cut(s) 22, 94, 427, 538
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 4 cut(s) 233, 293, 338, 558
HpaII CCGG 1 cut(s) 569
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 4 cut(s) 50, 56, 386, 470
Hpy188III TCNNGA 3 cut(s) 78, 435, 529
Hpy8I GTNNAC 4 cut(s) 50, 56, 386, 470
HpyAV CCTTC 4 cut(s) 211, 457, 515, 606
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 2 cut(s) 52, 666
HpyCH4V TGCA 2 cut(s) 98, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 44, 229, 596
HpySE526I ACGT 2 cut(s) 52, 666
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 4 cut(s) 22, 94, 427, 538
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 3 cut(s) 504, 525, 572
LmnI GCTCC 3 cut(s) 251, 610, 631
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 311
MaeII ACGT 2 cut(s) 52, 666
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 506, 527, 574
MboI GATC 3 cut(s) 504, 525, 572
MboII GAAGA 1 cut(s) 281
MflI RGATCY 2 cut(s) 525, 572
MhlI GDGCHC 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 100, 127, 412, 681
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 227, 347, 552
MnlI CCTC 5 cut(s) 146, 241, 288, 539, 679
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 171, 363
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 4 cut(s) 569, 570, 609, 672
MvaI CCWGG 2 cut(s) 609, 672
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 2 cut(s) 569, 570
NcoI CCATGG 2 cut(s) 18, 423
NdeII GATC 3 cut(s) 504, 525, 572
NlaIII CATG 4 cut(s) 22, 94, 427, 538
NlaIV GGNNCC 3 cut(s) 379, 429, 627
NmeAIII GCCGAG 1 cut(s) 271
PceI AGGCCT 1 cut(s) 675
PfeI GAWTC 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 2 cut(s) 409, 555
PleI GAGTC 3 cut(s) 227, 346, 552
PpsI GAGTC 3 cut(s) 227, 346, 552
Ppu21I YACGTR 1 cut(s) 667
PshBI ATTAAT 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 607, 670
PspGI CCWGG 2 cut(s) 607, 670
PspN4I GGNNCC 3 cut(s) 379, 429, 627
PspPI GGNCC 1 cut(s) 377
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 525, 572
RsaI GTAC 2 cut(s) 142, 669
RsaNI GTAC 2 cut(s) 141, 668
SaqAI TTAA 2 cut(s) 171, 363
SatI GCNGC 2 cut(s) 408, 554
Sau3AI GATC 3 cut(s) 504, 525, 572
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 3 cut(s) 227, 347, 552
ScrFI CCNGG 4 cut(s) 569, 570, 609, 672
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 333
SmaI CCCGGG 1 cut(s) 570
SnaBI TACGTA 1 cut(s) 667
Sse9I AATT 4 cut(s) 100, 127, 412, 681
SseBI AGGCCT 1 cut(s) 675
SsiI CCGC 2 cut(s) 407, 553
SspI AATATT 1 cut(s) 444
SspMI CTAG 1 cut(s) 311
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 4 cut(s) 567, 568, 607, 670
StyI CCWWGG 4 cut(s) 18, 423, 588, 617
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 2 cut(s) 55, 669
TaqI TCGA 3 cut(s) 26, 280, 648
TasI AATT 4 cut(s) 100, 127, 412, 681
TatI WGTACW 1 cut(s) 140
TauI GCSGC 2 cut(s) 410, 556
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 171, 363
Tru9I TTAA 2 cut(s) 171, 363
TscAI CASTG 1 cut(s) 645
TspDTI ATGAA 3 cut(s) 60, 444, 551
TspGWI ACGGA 3 cut(s) 199, 420, 473
TspMI CCCGGG 1 cut(s) 568
TspRI CASTG 1 cut(s) 645
VspI ATTAAT 1 cut(s) 171
XmaI CCCGGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 1 cut(s) 311
ZraI GACGTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.