Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007014.1

Orthogroup ID

OG0007395

Physical Location & Seq

Genomic Coordinates Forward (+)

11383 .. 20852

Gene Structure 9470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007014.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atggcaacagcgttgcccatggcatcgacttccagtctcagtctcggtagacgaccacccttattgggttcatattctggaaagaggaccatgcctgcaaattatcaaggcatttgctgtctcaataattcacaactttgtacaaccacaagaggatacaaggatgacgttaatctaatcaaacggagacagatgattgccttcctttttggtttttcaagctttgtcttagactcatttcaagccgagggagctggcttgccccctgaagaaaagcctcgactatgtgatgattcttgcgaaaaacagctagaaaatgtccctatggtaactacagagtctggtttgcagtataaggacattaaagttggtcaaggccccagtccacctgtcggttttcaggtggcggcaaattatgttgccatggttccgtctggacaaatatttgacagttcattggagaagggtcaactttatatattccgtgttggctctggtcaggtgatcaaaggacttgacgaagggatcttaaccatgaaaataggagggaagcggcgactctacatcccgggatctttggcctttcccaagggtctcacttcagctccaggaaggccaagggtggctccaagtagtccagtggttttcgatgctttgcaatgtggcgtttctgttgtaattggtgaccatgacataccaccaaattctgataatgtagccgctggggcgggtttagactataaatttcaaatgggaaatgaggacactgcctatgagcagagctttaggctttgcagtgtggctttgcagtgtggcgtttttgttgtaattggtgaccatgacctaccaccaaattcttacaacgtagcctctggggcgggtttagattgtgaatttcaaatgggaaatgaggacactgcctatgatcagagctttaggctttgcaatgctttgcagtgtggcgtttttgttgtaattggtgaccatgacatgccaccaaattctgagaacgtagccgctggggcgggtttagactgtgaatttcaaatgggaaatgaggacactgcctatgagcagagctttaggctttgcaatgtagcgtttctgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

370

Amino Acids

39.7

Weight (kDa)

4.82

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43560 AT2G43560
fragaria_vesca	FvH4_4g10650 FvH4_4g10650 FvH4_4g10650
prunus_persica	Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1
pyrus_communis	pycom04g04130
rosa_chinensis	RchiOBHm_Chr4g0406301
rosa_laevigata	RLG00000008778
rosa_multiflora	Rmu_sc0007014.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351040
rosa_rugosa	Rorug04G0067900 Rorug04G0067900
rosa_samantha	Rh4AG137100 Rh4BG134700 Rh4CG145300 Rh4DG132000
rosa_wichuraiana	Rw0G006870 Rw4G011130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	49
AciI	CCGC	7 cut(s)	407, 553, 720, 728, 878, 1017, 1025
AclWI	GGATC	2 cut(s)	533, 580
AcsI	RAATTY	6 cut(s)	703, 743, 853, 893, 1000, 1040
AcuI	CTGAAG	2 cut(s)	288, 585
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	65, 392
AgsI	TTSAA	5 cut(s)	219, 242, 749, 899, 1046
AhdI	GACNNNNNGTC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	7 cut(s)	222, 254, 310, 605, 783, 933, 1080
AluI	AGCT	7 cut(s)	222, 254, 310, 605, 783, 933, 1080
Alw26I	GTCTC	5 cut(s)	41, 47, 125, 181, 599
AlwI	GGATC	2 cut(s)	533, 580
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	3 cut(s)	376, 579, 614
ApoI	RAATTY	6 cut(s)	703, 743, 853, 893, 1000, 1040
AspS9I	GGNCC	2 cut(s)	87, 377
AsuC2I	CCSGG	2 cut(s)	569, 570
AsuHPI	GGTGA	4 cut(s)	514, 695, 845, 992
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	609
BciVI	GTATCC	1 cut(s)	149
BclI	TGATCA	2 cut(s)	504, 925
BcnI	CCSGG	2 cut(s)	569, 570
BcoDI	GTCTC	5 cut(s)	41, 47, 125, 181, 599
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	149
BglI	GCCNNNNNGGC	3 cut(s)	725, 875, 1022
BisI	GCNGC	4 cut(s)	408, 554, 720, 1017
BlsI	GCNGC	4 cut(s)	409, 555, 721, 1018
Bme1390I	CCNGG	3 cut(s)	569, 570, 609
Bme18I	GGWCC	1 cut(s)	87
BmeRI	GACNNNNNGTC	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	568
BmgT120I	GGNCC	2 cut(s)	87, 377
BmiI	GGNNCC	3 cut(s)	379, 429, 627
BmrFI	CCNGG	3 cut(s)	569, 570, 609
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	32, 640
BmuI	ACTGGG	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	591
BpuMI	CCSGG	2 cut(s)	569, 570
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	6 cut(s)	18, 246, 423, 568, 588, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 392
Bse1I	ACTGG	3 cut(s)	33, 381, 638
Bse3DI	GCAATG	3 cut(s)	665, 952, 1099
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	6 cut(s)	18, 246, 423, 568, 588, 617
BseGI	GGATG	2 cut(s)	169, 564
BseLI	CCNNNNNNNGG	2 cut(s)	65, 392
BseMI	GCAATG	3 cut(s)	665, 952, 1099
BseMII	CTCAG	2 cut(s)	52, 996
BseNI	ACTGG	3 cut(s)	33, 381, 638
BseYI	CCCAGC	2 cut(s)	722, 1019
BshFI	GGCC	3 cut(s)	378, 581, 616
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	65, 392
BsmAI	GTCTC	5 cut(s)	41, 47, 125, 181, 599
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	378, 581, 616
Bso31I	GGTCTC	1 cut(s)	599
BsoBI	CYCGRG	1 cut(s)	568
Bsp1407I	TGTACA	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	504, 525, 572, 925
Bsp19I	CCATGG	2 cut(s)	18, 423
BspACI	CCGC	7 cut(s)	407, 553, 720, 728, 878, 1017, 1025
BspANI	GGCC	3 cut(s)	378, 581, 616
BspCNI	CTCAG	2 cut(s)	51, 997
BspLI	GGNNCC	3 cut(s)	379, 429, 627
BspPI	GGATC	2 cut(s)	533, 580
BspTNI	GGTCTC	1 cut(s)	599
BsrDI	GCAATG	3 cut(s)	665, 952, 1099
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	33, 381, 638
BssECI	CCNNGG	6 cut(s)	18, 246, 423, 568, 588, 617
BssMI	GATC	4 cut(s)	504, 525, 572, 925
BssT1I	CCWWGG	4 cut(s)	18, 423, 588, 617
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	2 cut(s)	452, 1037
BstAUI	TGTACA	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	96, 256, 260
BstDEI	CTNAG	3 cut(s)	38, 229, 1005
BstDSI	CCRYGG	2 cut(s)	18, 423
BstEII	GGTNACC	3 cut(s)	683, 833, 980
BstF5I	GGATG	2 cut(s)	169, 564
BstKTI	GATC	4 cut(s)	507, 528, 575, 928
BstMAI	GTCTC	5 cut(s)	41, 47, 125, 181, 599
BstMBI	GATC	4 cut(s)	504, 525, 572, 925
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 725, 875, 1022
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	1 cut(s)	994
BstPI	GGTNACC	3 cut(s)	683, 833, 980
BstSCI	CCNGG	3 cut(s)	567, 568, 607
BstSFI	CTRYAG	1 cut(s)	333
BstX2I	RGATCY	2 cut(s)	525, 572
BstYI	RGATCY	2 cut(s)	525, 572
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	378, 581, 616
BtgI	CCRYGG	2 cut(s)	18, 423
BtsCI	GGATG	2 cut(s)	169, 564
BtsI	GCAGTG	6 cut(s)	765, 802, 815, 915, 962, 1062
BtsIMutI	CAGTG	7 cut(s)	645, 765, 802, 815, 915, 962, 1062
Cac8I	GCNNGC	3 cut(s)	96, 256, 260
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	87, 377
Cfr9I	CCCGGG	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	141
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	8 cut(s)	19, 91, 424, 535, 689, 839, 986, 991
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	3 cut(s)	38, 229, 1005
DpnI	GATC	4 cut(s)	506, 527, 574, 927
DpnII	GATC	4 cut(s)	504, 525, 572, 925
DriI	GACNNNNNGTC	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	33
Eco130I	CCWWGG	4 cut(s)	18, 423, 588, 617
Eco31I	GGTCTC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	288, 585
Eco88I	CYCGRG	1 cut(s)	568
Eco91I	GGTNACC	3 cut(s)	683, 833, 980
EcoO109I	RGGNCCY	1 cut(s)	377
EcoO65I	GGTNACC	3 cut(s)	683, 833, 980
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	4 cut(s)	18, 423, 588, 617
ErhI	CCWWGG	4 cut(s)	18, 423, 588, 617
FaeI	CATG	8 cut(s)	22, 94, 427, 538, 692, 842, 989, 994
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	8 cut(s)	18, 90, 423, 534, 688, 838, 985, 990
FauI	CCCGC	3 cut(s)	721, 871, 1018
FbaI	TGATCA	2 cut(s)	504, 925
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	4 cut(s)	408, 554, 720, 1017
FokI	GGATG	2 cut(s)	176, 551
Fsp4HI	GCNGC	4 cut(s)	408, 554, 720, 1017
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	4 cut(s)	408, 554, 720, 1017
GsaI	CCCAGC	2 cut(s)	726, 1023
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	3 cut(s)	378, 581, 616
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	8 cut(s)	22, 94, 427, 538, 692, 842, 989, 994
HincII	GTYRAC	1 cut(s)	470
HindII	GTYRAC	1 cut(s)	470
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	4 cut(s)	233, 293, 338, 558
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	4 cut(s)	514, 695, 845, 992
Hpy166II	GTNNAC	3 cut(s)	50, 386, 470
Hpy188I	TCNGA	3 cut(s)	709, 930, 1006
Hpy188III	TCNNGA	2 cut(s)	78, 435
Hpy8I	GTNNAC	3 cut(s)	50, 386, 470
HpyAV	CCTTC	4 cut(s)	211, 457, 515, 606
HpyCH4III	ACNGT	2 cut(s)	452, 1037
HpyCH4IV	ACGT	3 cut(s)	168, 864, 1011
HpyCH4V	TGCA	8 cut(s)	98, 349, 658, 795, 808, 945, 955, 1092
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 725, 875, 1022
HpyF3I	CTNAG	3 cut(s)	38, 229, 1005
HpySE526I	ACGT	3 cut(s)	168, 864, 1011
Hsp92II	CATG	8 cut(s)	22, 94, 427, 538, 692, 842, 989, 994
Ksp22I	TGATCA	2 cut(s)	504, 925
Kzo9I	GATC	4 cut(s)	504, 525, 572, 925
LmnI	GCTCC	3 cut(s)	251, 610, 631
LweI	GCATC	2 cut(s)	32, 640
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	3 cut(s)	168, 864, 1011
MaeIII	GTNAC	4 cut(s)	328, 683, 833, 980
MalI	GATC	4 cut(s)	506, 527, 574, 927
MboI	GATC	4 cut(s)	504, 525, 572, 925
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	2 cut(s)	525, 572
MlyI	GAGTC	3 cut(s)	227, 347, 552
MnlI	CCTC	9 cut(s)	78, 146, 241, 288, 539, 754, 880, 904, 1051
MseI	TTAA	3 cut(s)	171, 363, 530
MspA1I	CMGCKG	2 cut(s)	722, 1019
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	3 cut(s)	569, 570, 609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	4 cut(s)	251, 725, 875, 1022
NciI	CCSGG	2 cut(s)	569, 570
NcoI	CCATGG	2 cut(s)	18, 423
NdeII	GATC	4 cut(s)	504, 525, 572, 925
NlaIII	CATG	8 cut(s)	22, 94, 427, 538, 692, 842, 989, 994
NlaIV	GGNNCC	3 cut(s)	379, 429, 627
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	3 cut(s)	683, 833, 980
NspI	RCATGY	1 cut(s)	994
PfeI	GAWTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	4 cut(s)	409, 555, 721, 1018
PleI	GAGTC	3 cut(s)	227, 346, 552
PpsI	GAGTC	3 cut(s)	227, 346, 552
Psp6I	CCWGG	1 cut(s)	607
PspEI	GGTNACC	3 cut(s)	683, 833, 980
PspFI	CCCAGC	2 cut(s)	722, 1019
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	3 cut(s)	379, 429, 627
PspPI	GGNCC	2 cut(s)	87, 377
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	525, 572
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	171, 363, 530
SatI	GCNGC	4 cut(s)	408, 554, 720, 1017
Sau3AI	GATC	4 cut(s)	504, 525, 572, 925
Sau96I	GGNCC	2 cut(s)	87, 377
SchI	GAGTC	3 cut(s)	227, 347, 552
ScrFI	CCNGG	3 cut(s)	569, 570, 609
SfaNI	GCATC	2 cut(s)	32, 640
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	87
SmaI	CCCGGG	1 cut(s)	570
SsiI	CCGC	7 cut(s)	407, 553, 720, 728, 878, 1017, 1025
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	567, 568, 607
StyI	CCWWGG	4 cut(s)	18, 423, 588, 617
TaaI	ACNGT	2 cut(s)	452, 1037
TaiI	ACGT	3 cut(s)	171, 867, 1014
TaqI	TCGA	3 cut(s)	26, 280, 648
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	4 cut(s)	410, 556, 722, 1019
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	171, 363, 530
Tru9I	TTAA	3 cut(s)	171, 363, 530
TscAI	CASTG	7 cut(s)	645, 772, 802, 815, 922, 962, 1069
TseFI	GTSAC	3 cut(s)	683, 833, 980
Tsp45I	GTSAC	3 cut(s)	683, 833, 980
TspDTI	ATGAA	3 cut(s)	60, 444, 551
TspGWI	ACGGA	3 cut(s)	199, 420, 473
TspMI	CCCGGG	1 cut(s)	568
TspRI	CASTG	7 cut(s)	645, 772, 802, 815, 922, 962, 1069
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	6 cut(s)	703, 743, 853, 893, 1000, 1040
XceI	RCATGY	1 cut(s)	994
XmaI	CCCGGG	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.