Rh4AG137100

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0007395
Physical Location & Seq
Forward (+)
30057887 .. 30062654
4768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG137100.1

Sequence Viewer

Length: 702 bp
ATGGCCACAGCGTTGCCCATGGCATCGACTTCCAGTCTCAGTCTCAGTCTCGGTAGACGACCACCTTTATTGGGTTCATATTCTGGAAAGAGGACCATGCCTGCAAATTATCAAGGCATTTGCTGTCTCAATAATTCACAACTTTGTACAACCACAAGAGGATACAAGGATGACGTTAATCTAATCAAACGGAGACAGATGATTGCCTTCCTTTTTGGTTTTTCAAGCTTTGTCTTAGACTCATTTCAAGCCGAGGGAGCTGGCTTGCCCCCTGAAGAAAAGCCTCGACTATGTGATGATTCTTGCGAAAAACAGCTAGAAAATGTCCCTATGGTAACTACAGAGTCTGGTTTGCAGTATAAGGATATTAAAGTTGGTCAAGGCCCCAGTCCACCTGTCGGTTTTCAGGTGGCGGCGAATTATGTTGCCATGGTTCCGTCTGGACAAATATTTGACAGTTCATTGGAGAAGGGTCAACTTTATATATTCCGTGTTGGCTCTGGTCAGGTGATCAAAGGACTTGACGAAGGGATCTTAACCATGAAAATAGGAGGGAAGCGGCGACTCTACATCCCGGGATCTTTGGCCTTTCCCAAGGGTCTCACTTCAGCTCCAGGAAGGCCAAGGGTGGCTCCAAGTAGTCCAGTGGTTTTCGATGTGAGTTTGGAATACGTACCAGGCCTTGAAATTGAGGAAGAGTGA

Protein Analysis

233

Amino Acids

25.15

Weight (kDa)

8.23

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 131 - 222 5.4e-20 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 55
AciI CCGC 2 cut(s) 413, 559
AclWI GGATC 2 cut(s) 539, 586
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 294, 591
AfaI GTAC 2 cut(s) 148, 675
AfiI CCNNNNNNNGG 2 cut(s) 71, 398
AgsI TTSAA 3 cut(s) 225, 248, 686
AhdI GACNNNNNGTC 1 cut(s) 33
AjnI CCWGG 2 cut(s) 613, 676
AluBI AGCT 4 cut(s) 228, 260, 316, 611
AluI AGCT 4 cut(s) 228, 260, 316, 611
Alw26I GTCTC 6 cut(s) 41, 47, 53, 131, 187, 605
AlwI GGATC 2 cut(s) 539, 586
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 5 cut(s) 3, 382, 585, 620, 679
AspS9I GGNCC 2 cut(s) 93, 383
AsuC2I CCSGG 2 cut(s) 575, 576
AsuHPI GGTGA 1 cut(s) 520
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 615, 678
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 2 cut(s) 575, 576
BcoDI GTCTC 6 cut(s) 41, 47, 53, 131, 187, 605
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 339
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 2 cut(s) 414, 560
BlsI GCNGC 2 cut(s) 415, 561
Bme1390I CCNGG 4 cut(s) 575, 576, 615, 678
Bme18I GGWCC 1 cut(s) 93
BmeRI GACNNNNNGTC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 2 cut(s) 93, 383
BmiI GGNNCC 3 cut(s) 385, 435, 633
BmrFI CCNGG 4 cut(s) 575, 576, 615, 678
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 597
BpuMI CCSGG 2 cut(s) 575, 576
BsaAI YACGTR 1 cut(s) 673
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 6 cut(s) 18, 252, 429, 574, 594, 623
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 398
Bse1I ACTGG 3 cut(s) 33, 387, 644
BseBI CCWGG 2 cut(s) 615, 678
BseDI CCNNGG 6 cut(s) 18, 252, 429, 574, 594, 623
BseGI GGATG 2 cut(s) 175, 570
BseLI CCNNNNNNNGG 2 cut(s) 71, 398
BseMII CTCAG 2 cut(s) 52, 58
BseNI ACTGG 3 cut(s) 33, 387, 644
BshFI GGCC 5 cut(s) 5, 384, 587, 622, 681
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 1 cut(s) 575
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 71, 398
BsmAI GTCTC 6 cut(s) 41, 47, 53, 131, 187, 605
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 5 cut(s) 5, 384, 587, 622, 681
Bso31I GGTCTC 1 cut(s) 605
BsoBI CYCGRG 1 cut(s) 574
Bsp1407I TGTACA 1 cut(s) 146
Bsp143I GATC 3 cut(s) 510, 531, 578
Bsp19I CCATGG 2 cut(s) 18, 429
BspACI CCGC 2 cut(s) 413, 559
BspANI GGCC 5 cut(s) 5, 384, 587, 622, 681
BspCNI CTCAG 2 cut(s) 51, 57
BspLI GGNNCC 3 cut(s) 385, 435, 633
BspPI GGATC 2 cut(s) 539, 586
BspTNI GGTCTC 1 cut(s) 605
BsrGI TGTACA 1 cut(s) 146
BsrI ACTGG 3 cut(s) 33, 387, 644
BssECI CCNNGG 6 cut(s) 18, 252, 429, 574, 594, 623
BssMI GATC 3 cut(s) 510, 531, 578
BssT1I CCWWGG 4 cut(s) 18, 429, 594, 623
Bst2UI CCWGG 2 cut(s) 615, 678
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 690
BstAUI TGTACA 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 102, 262, 266
BstDEI CTNAG 3 cut(s) 38, 44, 235
BstDSI CCRYGG 2 cut(s) 18, 429
BstF5I GGATG 2 cut(s) 175, 570
BstKTI GATC 3 cut(s) 513, 534, 581
BstMAI GTCTC 6 cut(s) 41, 47, 53, 131, 187, 605
BstMBI GATC 3 cut(s) 510, 531, 578
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 2 cut(s) 615, 678
BstSCI CCNGG 4 cut(s) 573, 574, 613, 676
BstSFI CTRYAG 1 cut(s) 339
BstSNI TACGTA 1 cut(s) 673
BstX2I RGATCY 2 cut(s) 531, 578
BstYI RGATCY 2 cut(s) 531, 578
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 5 cut(s) 5, 384, 587, 622, 681
BtgI CCRYGG 2 cut(s) 18, 429
BtsCI GGATG 2 cut(s) 175, 570
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 3 cut(s) 102, 262, 266
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 93, 383
Cfr9I CCCGGG 1 cut(s) 574
Csp6I GTAC 2 cut(s) 147, 674
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 4 cut(s) 19, 97, 430, 541
CviQI GTAC 2 cut(s) 147, 674
DdeI CTNAG 3 cut(s) 38, 44, 235
DpnI GATC 3 cut(s) 512, 533, 580
DpnII GATC 3 cut(s) 510, 531, 578
DriI GACNNNNNGTC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 690
Eam1105I GACNNNNNGTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 690
Eco105I TACGTA 1 cut(s) 673
Eco130I CCWWGG 4 cut(s) 18, 429, 594, 623
Eco147I AGGCCT 1 cut(s) 681
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 294, 591
Eco88I CYCGRG 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 613, 676
EcoT14I CCWWGG 4 cut(s) 18, 429, 594, 623
ErhI CCWWGG 4 cut(s) 18, 429, 594, 623
FaeI CATG 4 cut(s) 22, 100, 433, 544
FaqI GGGAC 1 cut(s) 311
FatI CATG 4 cut(s) 18, 96, 429, 540
FbaI TGATCA 1 cut(s) 510
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 414, 560
FokI GGATG 2 cut(s) 182, 557
Fsp4HI GCNGC 2 cut(s) 414, 560
FspBI CTAG 1 cut(s) 317
GluI GCNGC 2 cut(s) 414, 560
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 5 cut(s) 5, 384, 587, 622, 681
HapII CCGG 1 cut(s) 575
Hin1II CATG 4 cut(s) 22, 100, 433, 544
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 4 cut(s) 239, 299, 344, 564
HpaII CCGG 1 cut(s) 575
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 3 cut(s) 56, 392, 476
Hpy188III TCNNGA 2 cut(s) 84, 441
Hpy8I GTNNAC 3 cut(s) 56, 392, 476
HpyAV CCTTC 4 cut(s) 217, 463, 521, 612
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 2 cut(s) 174, 672
HpyCH4V TGCA 2 cut(s) 104, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 3 cut(s) 38, 44, 235
HpySE526I ACGT 2 cut(s) 174, 672
Hsp92II CATG 4 cut(s) 22, 100, 433, 544
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 3 cut(s) 510, 531, 578
LmnI GCTCC 3 cut(s) 257, 616, 637
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 317
MaeII ACGT 2 cut(s) 174, 672
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 512, 533, 580
MboI GATC 3 cut(s) 510, 531, 578
MboII GAAGA 1 cut(s) 287
MflI RGATCY 2 cut(s) 531, 578
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 106, 133, 418, 687
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 233, 353, 558
MnlI CCTC 6 cut(s) 84, 152, 247, 294, 545, 685
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 177, 369, 536
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 575
MspR9I CCNGG 4 cut(s) 575, 576, 615, 678
MvaI CCWGG 2 cut(s) 615, 678
MwoI GCNNNNNNNGC 1 cut(s) 257
NciI CCSGG 2 cut(s) 575, 576
NcoI CCATGG 2 cut(s) 18, 429
NdeII GATC 3 cut(s) 510, 531, 578
NlaIII CATG 4 cut(s) 22, 100, 433, 544
NlaIV GGNNCC 3 cut(s) 385, 435, 633
NmeAIII GCCGAG 1 cut(s) 277
PceI AGGCCT 1 cut(s) 681
PfeI GAWTC 1 cut(s) 299
PfoI TCCNGGA 1 cut(s) 613
PkrI GCNGC 2 cut(s) 415, 561
PleI GAGTC 3 cut(s) 233, 352, 558
PpsI GAGTC 3 cut(s) 233, 352, 558
Ppu21I YACGTR 1 cut(s) 673
Psp6I CCWGG 2 cut(s) 613, 676
PspGI CCWGG 2 cut(s) 613, 676
PspN4I GGNNCC 3 cut(s) 385, 435, 633
PspPI GGNCC 2 cut(s) 93, 383
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 2 cut(s) 531, 578
RsaI GTAC 2 cut(s) 148, 675
RsaNI GTAC 2 cut(s) 147, 674
SaqAI TTAA 3 cut(s) 177, 369, 536
SatI GCNGC 2 cut(s) 414, 560
Sau3AI GATC 3 cut(s) 510, 531, 578
Sau96I GGNCC 2 cut(s) 93, 383
SchI GAGTC 3 cut(s) 233, 353, 558
ScrFI CCNGG 4 cut(s) 575, 576, 615, 678
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 93
SmaI CCCGGG 1 cut(s) 576
SnaBI TACGTA 1 cut(s) 673
Sse9I AATT 4 cut(s) 106, 133, 418, 687
SseBI AGGCCT 1 cut(s) 681
SsiI CCGC 2 cut(s) 413, 559
SspI AATATT 1 cut(s) 450
SspMI CTAG 1 cut(s) 317
StuI AGGCCT 1 cut(s) 681
StyD4I CCNGG 4 cut(s) 573, 574, 613, 676
StyI CCWWGG 4 cut(s) 18, 429, 594, 623
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 2 cut(s) 177, 675
TaqI TCGA 3 cut(s) 26, 286, 654
TasI AATT 4 cut(s) 106, 133, 418, 687
TatI WGTACW 1 cut(s) 146
TauI GCSGC 2 cut(s) 416, 562
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 3 cut(s) 177, 369, 536
Tru9I TTAA 3 cut(s) 177, 369, 536
TscAI CASTG 1 cut(s) 651
TspDTI ATGAA 3 cut(s) 66, 450, 557
TspGWI ACGGA 3 cut(s) 205, 426, 479
TspMI CCCGGG 1 cut(s) 574
TspRI CASTG 1 cut(s) 651
VpaK11BI GGWCC 1 cut(s) 93
XmaI CCCGGG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 55
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.