Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007395

Physical Location & Seq

Genomic Coordinates Reverse (-)

3687639 .. 3691430

Gene Structure 3792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04130.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTTCGTCTTCCTCCACTCTGCTCTTTCCATTTGGTTCATCTTCTGGAAAAGGGATGTCCGCAGATTACCAAGGCGTTTCCTGCAGCAAAGTTCAAGGGATGCTTATCCGATGTTCTAATTCACAAGTTACTATAAATGCTACAAGGTCAAGAGTATGTAAGGATGAGTTTAATGTAATCAAAAGAAGAGATATGATTGGGTTGCTTTTCGGAGTTTCAAGCGCTGTGGCAGGCGCATTTGAAGCTGAGGGAGCTGGTCTGCCCCCAGAAGAGAAGCCTCGACTGTGTGATAATTCTTGCGAGAAGGAGCTTGAAAATGTGCCTATGGTAACTACAGAGTCTGGTTTGCAGTACAAGGATATTAAAGTTGGTCAAGGCCCCAGTCCACCAGTCGGTTTTCAGGTAGCAGCGAATTATGTAGCCATGGTTCCATCTGGACAAATATTTGACAGTTCATTGGAGAAGGGTCAAGTTTATATATTTCGTGTTGGCTCTGGTCAGGTGATCAAGGGACTTGATGAAGGGATCTTGTCCATGAAAGTAGGAGGGAAGCGACGACTCTACATCCCAGGATCGTTGGCATTTCCCAAGGGTCTCAATTCAGCTCCGGGAAGACCAAGGGTGGCTCCAAGCAGTCCGGTTGTTTTTGATGTGAGCTTGGAATACGTACCAGGCCTTGACATTGAGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

233

Amino Acids

24.64

Weight (kDa)

6.41

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43560 AT2G43560
fragaria_vesca	FvH4_4g10650 FvH4_4g10650 FvH4_4g10650
prunus_persica	Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1
pyrus_communis	pycom04g04130
rosa_chinensis	RchiOBHm_Chr4g0406301
rosa_laevigata	RLG00000008778
rosa_multiflora	Rmu_sc0007014.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351040
rosa_rugosa	Rorug04G0067900 Rorug04G0067900
rosa_samantha	Rh4AG137100 Rh4BG134700 Rh4CG145300 Rh4DG132000
rosa_wichuraiana	Rw0G006870 Rw4G011130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	2 cut(s)	536, 583
AfaI	GTAC	2 cut(s)	356, 672
AfeI	AGCGCT	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	4 cut(s)	98, 222, 245, 317
AjnI	CCWGG	2 cut(s)	571, 673
AluBI	AGCT	5 cut(s)	248, 257, 313, 608, 660
AluI	AGCT	5 cut(s)	248, 257, 313, 608, 660
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	2 cut(s)	536, 583
AlwNI	CAGNNNCTG	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	226
AoxI	GGCC	2 cut(s)	379, 676
ApeKI	GCWGC	2 cut(s)	87, 410
AspLEI	GCGC	2 cut(s)	227, 239
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	517
BbsI	GAAGAC	2 cut(s)	3, 622
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	99, 422
BccI	CCATC	1 cut(s)	442
BciT130I	CCWGG	2 cut(s)	573, 675
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	602
BfmI	CTRYAG	2 cut(s)	85, 336
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	2 cut(s)	88, 411
BlsI	GCNGC	2 cut(s)	89, 412
Bme1390I	CCNGG	3 cut(s)	573, 612, 675
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	3 cut(s)	382, 432, 630
BmrFI	CCNGG	3 cut(s)	573, 612, 675
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	378
BpiI	GAAGAC	2 cut(s)	3, 622
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	670
BsaBI	GATNNNNATC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	5 cut(s)	73, 426, 571, 591, 620
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	384, 392
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	573, 675
BseDI	CCNNGG	5 cut(s)	73, 426, 571, 591, 620
BseGI	GGATG	4 cut(s)	63, 108, 172, 567
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	384, 392
BseXI	GCAGC	2 cut(s)	99, 422
BshFI	GGCC	2 cut(s)	381, 678
BsiSI	CCGG	2 cut(s)	611, 641
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	2 cut(s)	381, 678
Bso31I	GGTCTC	1 cut(s)	602
Bsp143I	GATC	3 cut(s)	507, 528, 575
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	381, 678
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	382, 432, 630
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	2 cut(s)	536, 583
BspTNI	GGTCTC	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	384, 392
BssECI	CCNNGG	5 cut(s)	73, 426, 571, 591, 620
BssMI	GATC	3 cut(s)	507, 528, 575
BssT1I	CCWWGG	4 cut(s)	73, 426, 591, 620
Bst2UI	CCWGG	2 cut(s)	573, 675
Bst4CI	ACNGT	2 cut(s)	288, 455
Bst6I	CTCTTC	3 cut(s)	184, 267, 687
BstBAI	YACGTR	1 cut(s)	670
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	63, 108, 172, 567
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	227, 239
BstKTI	GATC	3 cut(s)	510, 531, 578
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	3 cut(s)	507, 528, 575
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 245, 254
BstNI	CCWGG	2 cut(s)	573, 675
BstSCI	CCNGG	3 cut(s)	571, 610, 673
BstSFI	CTRYAG	2 cut(s)	85, 336
BstSNI	TACGTA	1 cut(s)	670
BstV1I	GCAGC	2 cut(s)	99, 422
BstV2I	GAAGAC	2 cut(s)	3, 622
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	381, 678
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	63, 108, 172, 567
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	2 cut(s)	227, 239
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	355, 671
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	2 cut(s)	427, 538
CviQI	GTAC	2 cut(s)	355, 671
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	509, 530, 577
DpnII	GATC	3 cut(s)	507, 528, 575
Eam1104I	CTCTTC	3 cut(s)	184, 267, 687
EarI	CTCTTC	3 cut(s)	184, 267, 687
Eco105I	TACGTA	1 cut(s)	670
Eco130I	CCWWGG	4 cut(s)	73, 426, 591, 620
Eco147I	AGGCCT	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	602
Eco47III	AGCGCT	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	571, 673
EcoT14I	CCWWGG	4 cut(s)	73, 426, 591, 620
ErhI	CCWWGG	4 cut(s)	73, 426, 591, 620
FaeI	CATG	2 cut(s)	430, 541
FaiI	YATR	9 cut(s)	137, 160, 197, 329, 420, 428, 480, 482, 539
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	2 cut(s)	426, 537
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	88, 411
FokI	GGATG	4 cut(s)	70, 115, 179, 554
Fsp4HI	GCNGC	2 cut(s)	88, 411
GlaI	GCGC	2 cut(s)	226, 238
GluI	GCNGC	2 cut(s)	88, 411
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	381, 678
HapII	CCGG	2 cut(s)	611, 641
HhaI	GCGC	2 cut(s)	227, 239
Hin1II	CATG	2 cut(s)	430, 541
Hin6I	GCGC	2 cut(s)	225, 237
HinP1I	GCGC	2 cut(s)	225, 237
HinfI	GANTC	2 cut(s)	341, 561
HpaII	CCGG	2 cut(s)	611, 641
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	2 cut(s)	113, 215
Hpy188III	TCNNGA	3 cut(s)	48, 153, 438
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	3 cut(s)	301, 460, 518
HpyCH4III	ACNGT	2 cut(s)	288, 455
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	2 cut(s)	87, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 245, 254
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	2 cut(s)	430, 541
HspAI	GCGC	2 cut(s)	225, 237
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	507, 528, 575
LmnI	GCTCC	4 cut(s)	254, 310, 613, 634
Lsp1109I	GCAGC	2 cut(s)	99, 422
LweI	GCATC	1 cut(s)	93
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	130, 331
MalI	GATC	3 cut(s)	509, 530, 577
MboI	GATC	3 cut(s)	507, 528, 575
MboII	GAAGA	5 cut(s)	3, 36, 201, 284, 627
MflI	RGATCY	1 cut(s)	528
MluCI	AATT	4 cut(s)	121, 295, 415, 601
MlyI	GAGTC	2 cut(s)	350, 555
MnlI	CCTC	5 cut(s)	25, 244, 291, 542, 682
MseI	TTAA	2 cut(s)	174, 366
MspI	CCGG	2 cut(s)	611, 641
MspR9I	CCNGG	3 cut(s)	573, 612, 675
MvaI	CCWGG	2 cut(s)	573, 675
MwoI	GCNNNNNNNGC	3 cut(s)	84, 245, 254
NciI	CCSGG	1 cut(s)	612
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	507, 528, 575
NlaIII	CATG	2 cut(s)	430, 541
NlaIV	GGNNCC	3 cut(s)	382, 432, 630
PceI	AGGCCT	1 cut(s)	678
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	2 cut(s)	89, 412
PleI	GAGTC	2 cut(s)	349, 555
PpsI	GAGTC	2 cut(s)	349, 555
Ppu21I	YACGTR	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	571, 673
PspGI	CCWGG	2 cut(s)	571, 673
PspN4I	GGNNCC	3 cut(s)	382, 432, 630
PspPI	GGNCC	1 cut(s)	380
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
PstI	CTGCAG	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	528
RsaI	GTAC	2 cut(s)	356, 672
RsaNI	GTAC	2 cut(s)	355, 671
SaqAI	TTAA	2 cut(s)	174, 366
SatI	GCNGC	2 cut(s)	88, 411
Sau3AI	GATC	3 cut(s)	507, 528, 575
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	2 cut(s)	350, 555
ScrFI	CCNGG	3 cut(s)	573, 612, 675
SetI	ASST	9 cut(s)	152, 250, 259, 315, 408, 507, 610, 662, 672
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	2 cut(s)	85, 336
SnaBI	TACGTA	1 cut(s)	670
Sse9I	AATT	4 cut(s)	121, 295, 415, 601
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	1 cut(s)	63
SspI	AATATT	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	3 cut(s)	571, 610, 673
StyI	CCWWGG	4 cut(s)	73, 426, 591, 620
TaaI	ACNGT	2 cut(s)	288, 455
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	1 cut(s)	283
TasI	AATT	4 cut(s)	121, 295, 415, 601
TatI	WGTACW	1 cut(s)	354
Tru1I	TTAA	2 cut(s)	174, 366
Tru9I	TTAA	2 cut(s)	174, 366
TseI	GCWGC	2 cut(s)	87, 410
TspDTI	ATGAA	4 cut(s)	30, 447, 537, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.