Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007395

Physical Location & Seq

Genomic Coordinates Forward (+)

14378304 .. 14382891

Gene Structure 4588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCACAAATTTGGCATCAACTTCCAGTCTCAGTCTCAGTCTCAAGAGTAGACGACCACCTCTCCTGGGTTCGTATTCTGGGAAGAGGAATTATCGATGTCACAGTATGCAATCTTCAAAGCTACAACTTAGTACAACCACCCCCGGAGAGTTTAATCTAATCCAACGGAGAGATGCCATTGCCTTCCTTTTTGGTTTTTCAAGCTGCCTTGTCCTGGACTCATTTCAAGCCCAGGGAGCTGGGTTGCCCCCAGAAGAAAAGCCTCGACTTTGTGATAATTCTTGTGAACAACAGCTTGAAAATGTCCCAATGGTAACTACAGAGTCTGGTTTGCAGTATAAGGATATTAAAGTCGGTCAAGGCCCCAGTCCACCTGTTGGTTTTCAGGTGGCGGCGAATTATGTCGCCATGGTTCCGTCTGGACAAATATTTGACAGTTCATTGGAGAAGGGTCAACTTTATATATTTCGTGTTGGCTCTGGTCAGGTGATCAAGGGACTTGACGAAGGGATCTTGACCATGAAAATAGGAGGGAAGCGGCGGCTCTACATCCCAGGATCTTTGGCCTTTCCCAAGGGTCTCAATTCAGCTCCAGGAAGACCAAGGGTGGCACCAAGTAGTCCAGTGGTTTTCGATGTGAGTTTGGAATACGTACCGGGACTTGAAATTGATGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

228

Amino Acids

24.52

Weight (kDa)

8.65

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	125 - 216	3.9e-20	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43560 AT2G43560
fragaria_vesca	FvH4_4g10650 FvH4_4g10650 FvH4_4g10650
prunus_persica	Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1
pyrus_communis	pycom04g04130
rosa_chinensis	RchiOBHm_Chr4g0406301
rosa_laevigata	RLG00000008778
rosa_multiflora	Rmu_sc0007014.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351040
rosa_rugosa	Rorug04G0067900 Rorug04G0067900
rosa_samantha	Rh4AG137100 Rh4BG134700 Rh4CG145300 Rh4DG132000
rosa_wichuraiana	Rw0G006870 Rw4G011130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	613
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	3 cut(s)	395, 541, 544
AclWI	GGATC	2 cut(s)	521, 568
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	2 cut(s)	136, 657
AfiI	CCNNNNNNNGG	3 cut(s)	68, 217, 380
AgsI	TTSAA	5 cut(s)	120, 204, 230, 302, 668
AjnI	CCWGG	5 cut(s)	66, 216, 234, 556, 595
AluBI	AGCT	5 cut(s)	124, 207, 242, 298, 593
AluI	AGCT	5 cut(s)	124, 207, 242, 298, 593
Alw26I	GTCTC	4 cut(s)	35, 41, 47, 587
AlwI	GGATC	2 cut(s)	521, 568
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	3 cut(s)	3, 364, 567
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	2 cut(s)	147, 660
AsuHPI	GGTGA	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	613
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbsI	GAAGAC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	194
BciT130I	CCWGG	5 cut(s)	68, 218, 236, 558, 597
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	2 cut(s)	147, 660
BcoDI	GTCTC	4 cut(s)	35, 41, 47, 587
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	4 cut(s)	208, 396, 542, 545
BlsI	GCNGC	4 cut(s)	209, 397, 543, 546
Bme1390I	CCNGG	7 cut(s)	68, 147, 218, 236, 558, 597, 660
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	3 cut(s)	367, 417, 615
BmrFI	CCNGG	7 cut(s)	68, 147, 218, 236, 558, 597, 660
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	26, 166
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	607
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	147, 660
Bsa29I	ATCGAT	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	655
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	8 cut(s)	67, 145, 234, 235, 411, 556, 576, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 217, 380
Bse1I	ACTGG	3 cut(s)	27, 369, 626
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	5 cut(s)	68, 218, 236, 558, 597
BseCI	ATCGAT	1 cut(s)	97
BseDI	CCNNGG	8 cut(s)	67, 145, 234, 235, 411, 556, 576, 605
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	3 cut(s)	68, 217, 380
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	46, 52
BseNI	ACTGG	3 cut(s)	27, 369, 626
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	3 cut(s)	5, 366, 569
BshNI	GGYRCC	1 cut(s)	613
BshVI	ATCGAT	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	147, 659
BslFI	GGGAC	3 cut(s)	293, 513, 675
BslI	CCNNNNNNNGG	3 cut(s)	68, 217, 380
BsmAI	GTCTC	4 cut(s)	35, 41, 47, 587
BsmFI	GGGAC	3 cut(s)	293, 513, 675
BsnI	GGCC	3 cut(s)	5, 366, 569
Bso31I	GGTCTC	1 cut(s)	587
Bsp143I	GATC	3 cut(s)	492, 513, 560
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	3 cut(s)	395, 541, 544
BspANI	GGCC	3 cut(s)	5, 366, 569
BspCNI	CTCAG	2 cut(s)	45, 51
BspDI	ATCGAT	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	367, 417, 615
BspPI	GGATC	2 cut(s)	521, 568
BspT107I	GGYRCC	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	3 cut(s)	27, 369, 626
BssECI	CCNNGG	8 cut(s)	67, 145, 234, 235, 411, 556, 576, 605
BssMI	GATC	3 cut(s)	492, 513, 560
BssT1I	CCWWGG	3 cut(s)	411, 576, 605
Bst2UI	CCWGG	5 cut(s)	68, 218, 236, 558, 597
Bst4CI	ACNGT	2 cut(s)	107, 440
Bst6I	CTCTTC	2 cut(s)	80, 672
BstBAI	YACGTR	1 cut(s)	655
BstDEI	CTNAG	3 cut(s)	32, 38, 131
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	552
BstKTI	GATC	3 cut(s)	495, 516, 563
BstMAI	GTCTC	4 cut(s)	35, 41, 47, 587
BstMBI	GATC	3 cut(s)	492, 513, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	5 cut(s)	68, 218, 236, 558, 597
BstSCI	CCNGG	7 cut(s)	66, 145, 216, 234, 556, 595, 658
BstSFI	CTRYAG	1 cut(s)	321
BstSNI	TACGTA	1 cut(s)	655
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	607
BstX2I	RGATCY	2 cut(s)	513, 560
BstXI	CCANNNNNNTGG	2 cut(s)	13, 242
BstYI	RGATCY	2 cut(s)	513, 560
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	5, 366, 569
BsuTUI	ATCGAT	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	633
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	135, 656
CviAII	CATG	2 cut(s)	412, 523
CviQI	GTAC	2 cut(s)	135, 656
DdeI	CTNAG	3 cut(s)	32, 38, 131
DpnI	GATC	3 cut(s)	494, 515, 562
DpnII	GATC	3 cut(s)	492, 513, 560
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	80, 672
EarI	CTCTTC	2 cut(s)	80, 672
Eco105I	TACGTA	1 cut(s)	655
Eco130I	CCWWGG	3 cut(s)	411, 576, 605
Eco31I	GGTCTC	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	5 cut(s)	66, 216, 234, 556, 595
EcoT14I	CCWWGG	3 cut(s)	411, 576, 605
ErhI	CCWWGG	3 cut(s)	411, 576, 605
FaeI	CATG	2 cut(s)	415, 526
FaiI	YATR	7 cut(s)	110, 342, 405, 413, 465, 467, 524
FaqI	GGGAC	3 cut(s)	293, 513, 675
FatI	CATG	2 cut(s)	411, 522
FbaI	TGATCA	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	208, 396, 542, 545
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	4 cut(s)	208, 396, 542, 545
GluI	GCNGC	4 cut(s)	208, 396, 542, 545
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	5, 366, 569
HapII	CCGG	2 cut(s)	147, 659
Hin1II	CATG	2 cut(s)	415, 526
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HinfI	GANTC	2 cut(s)	221, 326
HpaII	CCGG	2 cut(s)	147, 659
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	4 cut(s)	53, 290, 374, 458
Hpy188III	TCNNGA	3 cut(s)	46, 423, 517
Hpy8I	GTNNAC	4 cut(s)	53, 290, 374, 458
HpyAV	CCTTC	3 cut(s)	196, 445, 503
HpyCH4III	ACNGT	2 cut(s)	107, 440
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	2 cut(s)	112, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	3 cut(s)	32, 38, 131
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	2 cut(s)	415, 526
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	492, 513, 560
LmnI	GCTCC	2 cut(s)	239, 598
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	26, 166
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	101, 316
MalI	GATC	3 cut(s)	494, 515, 562
MboI	GATC	3 cut(s)	492, 513, 560
MboII	GAAGA	4 cut(s)	97, 108, 269, 612
MflI	RGATCY	2 cut(s)	513, 560
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	10, 91, 280, 400, 586, 669
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	215, 335
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	4 cut(s)	72, 81, 276, 527
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	156, 351
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	147, 659
MspR9I	CCNGG	7 cut(s)	68, 147, 218, 236, 558, 597, 660
MvaI	CCWGG	5 cut(s)	68, 218, 236, 558, 597
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	2 cut(s)	147, 660
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	3 cut(s)	492, 513, 560
NlaIII	CATG	2 cut(s)	415, 526
NlaIV	GGNNCC	3 cut(s)	367, 417, 615
NmuCI	GTSAC	1 cut(s)	101
PasI	CCCWGGG	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	380
PfoI	TCCNGGA	2 cut(s)	216, 595
PkrI	GCNGC	4 cut(s)	209, 397, 543, 546
PleI	GAGTC	2 cut(s)	215, 334
PpsI	GAGTC	2 cut(s)	215, 334
Ppu21I	YACGTR	1 cut(s)	655
Psp6I	CCWGG	5 cut(s)	66, 216, 234, 556, 595
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	5 cut(s)	66, 216, 234, 556, 595
PspN4I	GGNNCC	3 cut(s)	367, 417, 615
PspPI	GGNCC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	513, 560
RsaI	GTAC	2 cut(s)	136, 657
RsaNI	GTAC	2 cut(s)	135, 656
SaqAI	TTAA	2 cut(s)	156, 351
SatI	GCNGC	4 cut(s)	208, 396, 542, 545
Sau3AI	GATC	3 cut(s)	492, 513, 560
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	2 cut(s)	215, 335
ScrFI	CCNGG	7 cut(s)	68, 147, 218, 236, 558, 597, 660
SfaNI	GCATC	2 cut(s)	26, 166
SfcI	CTRYAG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SnaBI	TACGTA	1 cut(s)	655
Sse9I	AATT	6 cut(s)	10, 91, 280, 400, 586, 669
SsiI	CCGC	3 cut(s)	395, 541, 544
SspI	AATATT	1 cut(s)	432
StyD4I	CCNGG	7 cut(s)	66, 145, 216, 234, 556, 595, 658
StyI	CCWWGG	3 cut(s)	411, 576, 605
TaaI	ACNGT	2 cut(s)	107, 440
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	3 cut(s)	97, 268, 636
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	6 cut(s)	10, 91, 280, 400, 586, 669
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	3 cut(s)	398, 544, 547
Tru1I	TTAA	2 cut(s)	156, 351
Tru9I	TTAA	2 cut(s)	156, 351
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	432, 539
TspGWI	ACGGA	2 cut(s)	184, 408
TspRI	CASTG	1 cut(s)	633
Van91I	CCANNNNNTGG	1 cut(s)	380
XapI	RAATTY	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.