Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007395

Physical Location & Seq

Genomic Coordinates Reverse (-)

39067227 .. 39077074

Gene Structure 9848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008778

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCCACAGCGTTGCCCATGGCATCGACTTCCAGTCTCAGTCTCAGTCTCAGTAGACGTCCACCTTTCTTGGGTTCATGTTCTGGAAAGAGGACCATGCGTGCAAATTATCAAGGCATTTGCTGTCTCAATAATTCACAACTTCGTACAGCCGCAAGAGGATGCAAGGATGACGTTAATCTAATCAAACGGAGACAGATGATTGCCTTCCTTTTTGGTTTTTCAAGCTTTATCTTAGACTCATTTCAAGCCGAGGGAGCTGGCTTGCCCCCTGAAGAAAAGCCTCGACTGTGTGATGATTCTTGCGAAAAACAGCTAGAAAATGTCCCTATGGTAACTACAGAGTCTGGTTTGCAGTATAAGGACATTAAAGTTGGTCAAGGCCCCAGTCCACCTGTCGGTTTTCAGGTGGCGGCGAATTATGTTGCCATGGTTCCGTCTGGACAAATATTTGACAGTTCATTGGAGAAGGGTCAACTTTATATATTCCGTGTTGGCTCTGGACAGGTGATCAAAGGACTTGACGAAGGGATCTTAACCATGAAAATAGGAGGGAAGCGGCGACTCTACATCCCGGGATCTTTGGCCTTTCCCAAAGGTCTCACTTCAGCTCCAGGAAGGCCAAGGGTGGCTCCAAGTAGTCCAGTGGTTTTTGATATTGTGAGCTTGCGCCTTGCCGGCGTAGTTGCGGAGGTCGGTGGAGAAGGAGCCTCCAAGGTTGCGTCGGTTTTCTGGAAGGAGAATGAGCTAAACATGGTTGATACGTCGGGACATGCAGACTTTGGTGGTGAAGTTGACCGGGTTGTTGGTATGGTTGAAGGGGCAGCTTTAGTTGTTGATGCAGGGGAAGGTCCGCTAGCACAGACCAAGTTTGTGCTTGCCAAAGCCTTAAAATATGGGCTGCATCCTATTCTTCTTCTAAACAAAGTAGATCGGCCTTCAGGTACTTATTCTCATCTTCAATTTGCAAAATGTGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

328

Amino Acids

34.86

Weight (kDa)

9.01

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	131 - 220	9.3e-19	FKBP-type peptidyl-prolyl cis-trans isomerase
GTP_EFTU	PF00009	238 - 316	3.4e-20	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43560 AT2G43560
fragaria_vesca	FvH4_4g10650 FvH4_4g10650 FvH4_4g10650
prunus_persica	Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1 Prupe.1G203000_v2.0.a1
pyrus_communis	pycom04g04130
rosa_chinensis	RchiOBHm_Chr4g0406301
rosa_laevigata	RLG00000008778
rosa_multiflora	Rmu_sc0007014.1_g000002
rosa_roxburghii	Rroxscaffold_5G00351040
rosa_rugosa	Rorug04G0067900 Rorug04G0067900
rosa_samantha	Rh4AG137100 Rh4BG134700 Rh4CG145300 Rh4DG132000
rosa_wichuraiana	Rw0G006870 Rw4G011130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	5 cut(s)	153, 413, 559, 689, 854
AclWI	GGATC	2 cut(s)	539, 586
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	3 cut(s)	294, 591, 924
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	2 cut(s)	148, 946
AfiI	CCNNNNNNNGG	2 cut(s)	71, 398
AgsI	TTSAA	4 cut(s)	225, 248, 818, 962
AhdI	GACNNNNNGTC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	7 cut(s)	228, 260, 316, 611, 666, 748, 827
AluI	AGCT	7 cut(s)	228, 260, 316, 611, 666, 748, 827
Alw26I	GTCTC	6 cut(s)	41, 47, 53, 131, 187, 605
AlwI	GGATC	2 cut(s)	539, 586
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	574
AoxI	GGCC	5 cut(s)	3, 382, 585, 620, 935
ApeKI	GCWGC	2 cut(s)	824, 901
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	3 cut(s)	93, 383, 851
AsuC2I	CCSGG	3 cut(s)	575, 576, 800
AsuHPI	GGTGA	2 cut(s)	520, 800
AsuNHI	GCTAGC	1 cut(s)	856
AvaI	CYCGRG	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	93, 851
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	836, 888
BciT130I	CCWGG	1 cut(s)	615
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	3 cut(s)	575, 576, 800
BcoDI	GTCTC	6 cut(s)	41, 47, 53, 131, 187, 605
BfaI	CTAG	2 cut(s)	317, 857
BfmI	CTRYAG	1 cut(s)	339
BglI	GCCNNNNNGGC	1 cut(s)	678
BisI	GCNGC	5 cut(s)	153, 414, 560, 825, 902
BlsI	GCNGC	5 cut(s)	154, 415, 561, 826, 903
Bme1390I	CCNGG	4 cut(s)	575, 576, 615, 800
Bme18I	GGWCC	2 cut(s)	93, 851
BmeRI	GACNNNNNGTC	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	574
BmgT120I	GGNCC	3 cut(s)	93, 383, 851
BmiI	GGNNCC	4 cut(s)	385, 435, 633, 709
BmrFI	CCNGG	4 cut(s)	575, 576, 615, 800
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	4 cut(s)	32, 152, 829, 913
BmtI	GCTAGC	1 cut(s)	860
BmuI	ACTGGG	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	597
BpuMI	CCSGG	3 cut(s)	575, 576, 800
BsaHI	GRCGYC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	605
BsaJI	CCNNGG	6 cut(s)	18, 252, 429, 574, 623, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 398
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	3 cut(s)	33, 387, 644
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	6 cut(s)	18, 252, 429, 574, 623, 714
BseGI	GGATG	4 cut(s)	167, 175, 570, 904
BseLI	CCNNNNNNNGG	2 cut(s)	71, 398
BseMII	CTCAG	3 cut(s)	52, 58, 64
BseNI	ACTGG	3 cut(s)	33, 387, 644
BseXI	GCAGC	2 cut(s)	836, 888
BshFI	GGCC	5 cut(s)	5, 384, 587, 622, 937
BsiHKCI	CYCGRG	1 cut(s)	574
BsiSI	CCGG	3 cut(s)	575, 678, 799
BslFI	GGGAC	2 cut(s)	311, 783
BslI	CCNNNNNNNGG	2 cut(s)	71, 398
BsmAI	GTCTC	6 cut(s)	41, 47, 53, 131, 187, 605
BsmFI	GGGAC	2 cut(s)	311, 783
BsnI	GGCC	5 cut(s)	5, 384, 587, 622, 937
Bso31I	GGTCTC	1 cut(s)	605
BsoBI	CYCGRG	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	510, 531, 578, 931
Bsp19I	CCATGG	2 cut(s)	18, 429
BspACI	CCGC	5 cut(s)	153, 413, 559, 689, 854
BspANI	GGCC	5 cut(s)	5, 384, 587, 622, 937
BspCNI	CTCAG	3 cut(s)	51, 57, 63
BspLI	GGNNCC	4 cut(s)	385, 435, 633, 709
BspOI	GCTAGC	1 cut(s)	860
BspPI	GGATC	2 cut(s)	539, 586
BspTNI	GGTCTC	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	3 cut(s)	33, 387, 644
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	6 cut(s)	18, 252, 429, 574, 623, 714
BssMI	GATC	4 cut(s)	510, 531, 578, 931
BssNI	GRCGYC	1 cut(s)	58
BssT1I	CCWWGG	4 cut(s)	18, 429, 623, 714
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	291, 458
BstACI	GRCGYC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstC8I	GCNNGC	7 cut(s)	102, 262, 266, 668, 679, 858, 879
BstDEI	CTNAG	4 cut(s)	38, 44, 50, 235
BstDSI	CCRYGG	2 cut(s)	18, 429
BstF5I	GGATG	4 cut(s)	167, 175, 570, 904
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	4 cut(s)	513, 534, 581, 934
BstMAI	GTCTC	6 cut(s)	41, 47, 53, 131, 187, 605
BstMBI	GATC	4 cut(s)	510, 531, 578, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 678, 974
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	4 cut(s)	573, 574, 613, 798
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	836, 888
BstX2I	RGATCY	2 cut(s)	531, 578
BstYI	RGATCY	2 cut(s)	531, 578
BsuRI	GGCC	5 cut(s)	5, 384, 587, 622, 937
BtgI	CCRYGG	2 cut(s)	18, 429
BtsCI	GGATG	4 cut(s)	167, 175, 570, 904
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	7 cut(s)	102, 262, 266, 668, 679, 858, 879
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	1 cut(s)	672
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	3 cut(s)	93, 383, 851
Cfr9I	CCCGGG	1 cut(s)	574
CseI	GACGC	1 cut(s)	711
Csp6I	GTAC	2 cut(s)	147, 945
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	7 cut(s)	19, 78, 97, 430, 541, 754, 773
CviQI	GTAC	2 cut(s)	147, 945
DdeI	CTNAG	4 cut(s)	38, 44, 50, 235
DpnI	GATC	4 cut(s)	512, 533, 580, 933
DpnII	GATC	4 cut(s)	510, 531, 578, 931
DriI	GACNNNNNGTC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	33
Eco130I	CCWWGG	4 cut(s)	18, 429, 623, 714
Eco31I	GGTCTC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	93, 851
Eco57I	CTGAAG	3 cut(s)	294, 591, 924
Eco88I	CYCGRG	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	4 cut(s)	18, 429, 623, 714
ErhI	CCWWGG	4 cut(s)	18, 429, 623, 714
FaeI	CATG	7 cut(s)	22, 81, 100, 433, 544, 757, 776
FaqI	GGGAC	2 cut(s)	311, 783
FatI	CATG	7 cut(s)	18, 77, 96, 429, 540, 753, 772
FbaI	TGATCA	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	5 cut(s)	153, 414, 560, 825, 902
FokI	GGATG	4 cut(s)	174, 182, 557, 891
Fsp4HI	GCNGC	5 cut(s)	153, 414, 560, 825, 902
FspBI	CTAG	2 cut(s)	317, 857
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	5 cut(s)	153, 414, 560, 825, 902
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	5 cut(s)	5, 384, 587, 622, 937
HapII	CCGG	3 cut(s)	575, 678, 799
HgaI	GACGC	1 cut(s)	711
HhaI	GCGC	1 cut(s)	672
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	7 cut(s)	22, 81, 100, 433, 544, 757, 776
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HincII	GTYRAC	2 cut(s)	476, 796
HindII	GTYRAC	2 cut(s)	476, 796
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	4 cut(s)	239, 299, 344, 564
HpaII	CCGG	3 cut(s)	575, 678, 799
HphI	GGTGA	2 cut(s)	520, 800
Hpy166II	GTNNAC	5 cut(s)	56, 62, 392, 476, 796
Hpy188III	TCNNGA	5 cut(s)	84, 441, 501, 733, 768
Hpy8I	GTNNAC	5 cut(s)	56, 62, 392, 476, 796
Hpy99I	CGWCG	2 cut(s)	727, 769
HpyAV	CCTTC	9 cut(s)	217, 463, 521, 612, 698, 730, 812, 842, 948
HpyCH4III	ACNGT	2 cut(s)	291, 458
HpyCH4IV	ACGT	3 cut(s)	58, 174, 764
HpyCH4V	TGCA	8 cut(s)	104, 165, 355, 776, 842, 904, 968, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 678, 974
HpyF3I	CTNAG	4 cut(s)	38, 44, 50, 235
HpySE526I	ACGT	3 cut(s)	58, 174, 764
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	7 cut(s)	22, 81, 100, 433, 544, 757, 776
HspAI	GCGC	1 cut(s)	670
KroI	GCCGGC	1 cut(s)	677
KroNI	GCCGGC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	510, 531, 578, 931
LmnI	GCTCC	4 cut(s)	257, 616, 637, 707
Lsp1109I	GCAGC	2 cut(s)	836, 888
LweI	GCATC	4 cut(s)	32, 152, 829, 913
MaeI	CTAG	2 cut(s)	317, 857
MaeII	ACGT	3 cut(s)	58, 174, 764
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	4 cut(s)	512, 533, 580, 933
MboI	GATC	4 cut(s)	510, 531, 578, 931
MboII	GAAGA	4 cut(s)	287, 905, 908, 950
MflI	RGATCY	2 cut(s)	531, 578
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	106, 133, 418, 962, 979
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	233, 353, 558
MnlI	CCTC	7 cut(s)	84, 152, 247, 294, 545, 685, 721
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	177, 369, 536, 890, 982
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	575, 678, 799
MspR9I	CCNGG	4 cut(s)	575, 576, 615, 800
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	3 cut(s)	257, 678, 974
NaeI	GCCGGC	1 cut(s)	679
NciI	CCSGG	3 cut(s)	575, 576, 800
NcoI	CCATGG	2 cut(s)	18, 429
NdeII	GATC	4 cut(s)	510, 531, 578, 931
NgoMIV	GCCGGC	1 cut(s)	677
NheI	GCTAGC	1 cut(s)	856
NlaIII	CATG	7 cut(s)	22, 81, 100, 433, 544, 757, 776
NlaIV	GGNNCC	4 cut(s)	385, 435, 633, 709
NmeAIII	GCCGAG	1 cut(s)	277
NspI	RCATGY	1 cut(s)	776
PdiI	GCCGGC	1 cut(s)	679
PfeI	GAWTC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	613
PkrI	GCNGC	5 cut(s)	154, 415, 561, 826, 903
PleI	GAGTC	3 cut(s)	233, 352, 558
PpsI	GAGTC	3 cut(s)	233, 352, 558
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	4 cut(s)	385, 435, 633, 709
PspPI	GGNCC	3 cut(s)	93, 383, 851
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	531, 578
RsaI	GTAC	2 cut(s)	148, 946
RsaNI	GTAC	2 cut(s)	147, 945
SaqAI	TTAA	5 cut(s)	177, 369, 536, 890, 982
SatI	GCNGC	5 cut(s)	153, 414, 560, 825, 902
Sau3AI	GATC	4 cut(s)	510, 531, 578, 931
Sau96I	GGNCC	3 cut(s)	93, 383, 851
SchI	GAGTC	3 cut(s)	233, 353, 558
ScrFI	CCNGG	4 cut(s)	575, 576, 615, 800
SfaNI	GCATC	4 cut(s)	32, 152, 829, 913
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	2 cut(s)	93, 851
SmaI	CCCGGG	1 cut(s)	576
Sse9I	AATT	5 cut(s)	106, 133, 418, 962, 979
SsiI	CCGC	5 cut(s)	153, 413, 559, 689, 854
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	2 cut(s)	317, 857
StyD4I	CCNGG	4 cut(s)	573, 574, 613, 798
StyI	CCWWGG	4 cut(s)	18, 429, 623, 714
TaaI	ACNGT	2 cut(s)	291, 458
TaiI	ACGT	3 cut(s)	61, 177, 767
TaqI	TCGA	2 cut(s)	26, 286
TasI	AATT	5 cut(s)	106, 133, 418, 962, 979
TauI	GCSGC	3 cut(s)	155, 416, 562
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	5 cut(s)	177, 369, 536, 890, 982
Tru9I	TTAA	5 cut(s)	177, 369, 536, 890, 982
TscAI	CASTG	1 cut(s)	651
TseI	GCWGC	2 cut(s)	824, 901
TspDTI	ATGAA	3 cut(s)	66, 450, 557
TspGWI	ACGGA	3 cut(s)	205, 426, 479
TspMI	CCCGGG	1 cut(s)	574
TspRI	CASTG	1 cut(s)	651
VpaK11BI	GGWCC	2 cut(s)	93, 851
XceI	RCATGY	1 cut(s)	776
XmaI	CCCGGG	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	2 cut(s)	317, 857
ZraI	GACGTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.