Rh4BG134700

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007395
Physical Location & Seq
Forward (+)
22552189 .. 22557183
4995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG134700.1

Sequence Viewer

Length: 696 bp
ATGGCCACAGCGTTGCCCATGGCATCGACTTCCAGTCTCAGTCTCAGTAGACGTCCACCTTTCTTGGGTTCATATTCTGGAAAGAGGACCATGCCTGCAAATTATCAAGGCATTTGCTGTCTCAATAATTCACAACTTTGTACAACCACAAGAGGATACAAGGATGACGGTAATCTAATCAAACGGAGACAGATGATTGCCTTCCTTTTTGGTTTTTCAAGCTTTGTCTTAGACTCATTTCAAGCCGAGGGAGCTGGCTTGCCCCCTGAAGAAAAGCCTCGACTATGTGATGATTCTTGCGAAAAACAGCTAGAAAATGTCCCTATGGTAACTACAGAGTCTGGTTTGCAGTATAAGGATATTAAAGTTGGTCAAGGCCCTAGTCCACCTGTCGGTTTTCAGGTGGCGGCGAATTATGTTGCCATGGTTCCGTCTGGACAAATATTTGACAGTTCATTGGAGAAGGGTCAACTTTATATATTCCGTGTTGGCTCTGGTCAGGTGATCAAAGGACTTGACGAAGGGATCTTAACCATGAAAATAGGAGGGAAGCGGCGACTCTACATCCCGGGATCTTTGGCCTTTCCCAAGGGTCTCAGTTCAGCTCCAGGAAGGCCAAGGGTGGCTCCAAGTAGTCCGGTGGTTTTCGATGTGAGTTTGGAATACGTACCAGGCCTTGAAATTGAGGAAGAGTGA

Protein Analysis

231

Amino Acids

24.96

Weight (kDa)

8.23

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 129 - 220 4.7e-20 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 49
AciI CCGC 2 cut(s) 407, 553
AclWI GGATC 2 cut(s) 533, 580
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 2 cut(s) 142, 669
AfiI CCNNNNNNNGG 2 cut(s) 65, 392
AgsI TTSAA 3 cut(s) 219, 242, 680
AhdI GACNNNNNGTC 1 cut(s) 33
AjnI CCWGG 2 cut(s) 607, 670
AluBI AGCT 4 cut(s) 222, 254, 310, 605
AluI AGCT 4 cut(s) 222, 254, 310, 605
Alw26I GTCTC 5 cut(s) 41, 47, 125, 181, 599
AlwI GGATC 2 cut(s) 533, 580
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 5 cut(s) 3, 376, 579, 614, 673
AspS9I GGNCC 2 cut(s) 87, 377
AsuC2I CCSGG 2 cut(s) 569, 570
AsuHPI GGTGA 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 1 cut(s) 87
BalI TGGCCA 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 609, 672
BciVI GTATCC 1 cut(s) 149
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 2 cut(s) 569, 570
BcoDI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BfaI CTAG 2 cut(s) 311, 381
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 149
BisI GCNGC 2 cut(s) 408, 554
BlsI GCNGC 2 cut(s) 409, 555
Bme1390I CCNGG 4 cut(s) 569, 570, 609, 672
Bme18I GGWCC 1 cut(s) 87
BmeRI GACNNNNNGTC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 87, 377
BmiI GGNNCC 2 cut(s) 429, 627
BmrFI CCNGG 4 cut(s) 569, 570, 609, 672
BmsI GCATC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 591
BpuMI CCSGG 2 cut(s) 569, 570
BsaAI YACGTR 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
BsaWI WCCGGW 1 cut(s) 637
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 392
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 2 cut(s) 609, 672
BseDI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
BseGI GGATG 2 cut(s) 169, 564
BseLI CCNNNNNNNGG 2 cut(s) 65, 392
BseMII CTCAG 3 cut(s) 52, 58, 610
BseNI ACTGG 1 cut(s) 33
BshFI GGCC 5 cut(s) 5, 378, 581, 616, 675
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 2 cut(s) 569, 638
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 65, 392
BsmAI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 5 cut(s) 5, 378, 581, 616, 675
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 3 cut(s) 504, 525, 572
Bsp19I CCATGG 2 cut(s) 18, 423
BspACI CCGC 2 cut(s) 407, 553
BspANI GGCC 5 cut(s) 5, 378, 581, 616, 675
BspCNI CTCAG 3 cut(s) 51, 57, 609
BspLI GGNNCC 2 cut(s) 429, 627
BspPI GGATC 2 cut(s) 533, 580
BspTNI GGTCTC 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 6 cut(s) 18, 246, 423, 568, 588, 617
BssMI GATC 3 cut(s) 504, 525, 572
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 4 cut(s) 18, 423, 588, 617
Bst2UI CCWGG 2 cut(s) 609, 672
Bst4CI ACNGT 2 cut(s) 170, 452
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 3 cut(s) 96, 256, 260
BstDEI CTNAG 4 cut(s) 38, 44, 229, 596
BstDSI CCRYGG 2 cut(s) 18, 423
BstF5I GGATG 2 cut(s) 169, 564
BstKTI GATC 3 cut(s) 507, 528, 575
BstMAI GTCTC 5 cut(s) 41, 47, 125, 181, 599
BstMBI GATC 3 cut(s) 504, 525, 572
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 609, 672
BstSCI CCNGG 4 cut(s) 567, 568, 607, 670
BstSFI CTRYAG 1 cut(s) 333
BstSNI TACGTA 1 cut(s) 667
BstX2I RGATCY 2 cut(s) 525, 572
BstYI RGATCY 2 cut(s) 525, 572
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 5 cut(s) 5, 378, 581, 616, 675
BtgI CCRYGG 2 cut(s) 18, 423
BtsCI GGATG 2 cut(s) 169, 564
Cac8I GCNNGC 3 cut(s) 96, 256, 260
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 87, 377
Cfr9I CCCGGG 1 cut(s) 568
Csp6I GTAC 2 cut(s) 141, 668
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 4 cut(s) 19, 91, 424, 535
CviQI GTAC 2 cut(s) 141, 668
DdeI CTNAG 4 cut(s) 38, 44, 229, 596
DpnI GATC 3 cut(s) 506, 527, 574
DpnII GATC 3 cut(s) 504, 525, 572
DriI GACNNNNNGTC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 684
Eam1105I GACNNNNNGTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 684
Eco105I TACGTA 1 cut(s) 667
Eco130I CCWWGG 4 cut(s) 18, 423, 588, 617
Eco147I AGGCCT 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 607, 670
EcoT14I CCWWGG 4 cut(s) 18, 423, 588, 617
ErhI CCWWGG 4 cut(s) 18, 423, 588, 617
FaeI CATG 4 cut(s) 22, 94, 427, 538
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 18, 90, 423, 534
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 408, 554
FokI GGATG 2 cut(s) 176, 551
Fsp4HI GCNGC 2 cut(s) 408, 554
FspBI CTAG 2 cut(s) 311, 381
GluI GCNGC 2 cut(s) 408, 554
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 5 cut(s) 5, 378, 581, 616, 675
HapII CCGG 2 cut(s) 569, 638
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 4 cut(s) 22, 94, 427, 538
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 4 cut(s) 233, 293, 338, 558
HpaII CCGG 2 cut(s) 569, 638
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 4 cut(s) 50, 56, 386, 470
Hpy188III TCNNGA 2 cut(s) 78, 435
Hpy8I GTNNAC 4 cut(s) 50, 56, 386, 470
HpyAV CCTTC 4 cut(s) 211, 457, 515, 606
HpyCH4III ACNGT 2 cut(s) 170, 452
HpyCH4IV ACGT 2 cut(s) 52, 666
HpyCH4V TGCA 2 cut(s) 98, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 4 cut(s) 38, 44, 229, 596
HpySE526I ACGT 2 cut(s) 52, 666
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 4 cut(s) 22, 94, 427, 538
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 3 cut(s) 504, 525, 572
LmnI GCTCC 3 cut(s) 251, 610, 631
LweI GCATC 1 cut(s) 32
MaeI CTAG 2 cut(s) 311, 381
MaeII ACGT 2 cut(s) 52, 666
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 506, 527, 574
MboI GATC 3 cut(s) 504, 525, 572
MboII GAAGA 1 cut(s) 281
MflI RGATCY 2 cut(s) 525, 572
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 100, 127, 412, 681
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 227, 347, 552
MnlI CCTC 6 cut(s) 78, 146, 241, 288, 539, 679
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 363, 530
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 569, 638
MspR9I CCNGG 4 cut(s) 569, 570, 609, 672
MvaI CCWGG 2 cut(s) 609, 672
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 2 cut(s) 569, 570
NcoI CCATGG 2 cut(s) 18, 423
NdeII GATC 3 cut(s) 504, 525, 572
NlaIII CATG 4 cut(s) 22, 94, 427, 538
NlaIV GGNNCC 2 cut(s) 429, 627
NmeAIII GCCGAG 1 cut(s) 271
PceI AGGCCT 1 cut(s) 675
PfeI GAWTC 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 2 cut(s) 409, 555
PleI GAGTC 3 cut(s) 227, 346, 552
PpsI GAGTC 3 cut(s) 227, 346, 552
Ppu21I YACGTR 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 607, 670
PspGI CCWGG 2 cut(s) 607, 670
PspN4I GGNNCC 2 cut(s) 429, 627
PspPI GGNCC 2 cut(s) 87, 377
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 525, 572
RsaI GTAC 2 cut(s) 142, 669
RsaNI GTAC 2 cut(s) 141, 668
SaqAI TTAA 2 cut(s) 363, 530
SatI GCNGC 2 cut(s) 408, 554
Sau3AI GATC 3 cut(s) 504, 525, 572
Sau96I GGNCC 2 cut(s) 87, 377
SchI GAGTC 3 cut(s) 227, 347, 552
ScrFI CCNGG 4 cut(s) 569, 570, 609, 672
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 87
SmaI CCCGGG 1 cut(s) 570
SnaBI TACGTA 1 cut(s) 667
Sse9I AATT 4 cut(s) 100, 127, 412, 681
SseBI AGGCCT 1 cut(s) 675
SsiI CCGC 2 cut(s) 407, 553
SspI AATATT 1 cut(s) 444
SspMI CTAG 2 cut(s) 311, 381
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 4 cut(s) 567, 568, 607, 670
StyI CCWWGG 4 cut(s) 18, 423, 588, 617
TaaI ACNGT 2 cut(s) 170, 452
TaiI ACGT 2 cut(s) 55, 669
TaqI TCGA 3 cut(s) 26, 280, 648
TasI AATT 4 cut(s) 100, 127, 412, 681
TatI WGTACW 1 cut(s) 140
TauI GCSGC 2 cut(s) 410, 556
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 363, 530
Tru9I TTAA 2 cut(s) 363, 530
TspDTI ATGAA 3 cut(s) 60, 444, 551
TspGWI ACGGA 3 cut(s) 199, 420, 473
TspMI CCCGGG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 87
XmaI CCCGGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 2 cut(s) 311, 381
ZraI GACGTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.