AT2G43750

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009750
Physical Location & Seq
Reverse (-)
18129435 .. 18132638
3204 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43750.1

Sequence Viewer

Length: 1179 bp
ATGGCGGCGACATCTTCCTCTGCTTTTCTCCTTAATCCGTTGACTTCTCGCCACCGTCCTTTCAAATACTCGCCAGAGCTCTCTTCTCTCTCCTTATCCTCTCGAAAGGCTGCTGCTTTCGATGTTTCCTCAGCTGCTTTCACGCTCAAGAGACAGAGCCGGAGTGATGTTGTGTGCAAGGCTGTATCTATCAAGCCAGAAGCTGGTGTTGAAGGGCTCAATATCGCCGATAACGCCGCTCAGCTTATTGGGAAAACTCCGATGGTGTACTTGAACAATGTAGTCAAGGGCTGTGTTGCAAGTGTTGCTGCTAAGCTTGAGATCATGGAACCATGTTGCAGTGTCAAGGATAGGATTGGGTACAGTATGATTACTGATGCTGAAGAGAAAGGACTTATAACACCTGGAAAGAGTGTTCTTGTGGAATCTACGAGTGGGAACACAGGGATTGGCCTTGCATTCATTGCTGCTTCAAAAGGCTATAAACTTATCTTGACGATGCCTGCGTCCATGAGTTTGGAAAGGCGGGTTCTTTTGAGGGCATTTGGAGCTGAGCTTGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAATTCAGAAGGCTGAAGAAATCTTGAAAAAAACTCCCAATTCCTACATGCTCCAACAGTTTGACAACCCTGCCAATCCCAAGATTCATTATGAGACGACTGGTCCTGAGATTTGGGAAGATACAAGAGGCAAAATCGATATATTGGTTGCGGGGATTGGAACTGGTGGAACTATCACTGGTGTTGGTCGATTCATTAAAGAAAGAAAACCTGAATTGAAGGTTATTGGTGTCGAACCCACGGAAAGTGCTATACTTTCTGGTGGAAAACCCGGACCTCACAAGATTCAAGGAATTGGAGCTGGATTTGTACCCAAGAATTTGGATCTGGCTATTGTAGATGAATACATAGCGATTTCCAGTGAGGAAGCTATTGAAACCTCGAAGCAACTAGCTCTCCAGGAAGGCTTGTTGGTTGGTATATCTTCTGGAGCTGCTGCTGCTGCTGCAATCCAGGTTGCAAAGAGACCTGAAAATGCCGGGAAACTCATAGCCGTTGTGTTCCCGAGCTTCGGGGAACGTTACCTCTCGACCCAGCTTTTCCAGTCGATTCGAGAAGAGTGCGAGCAAATGCAGCCCGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0097159 GO:0097708 GO:0098791 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

392

Amino Acids

41.66

Weight (kDa)

8.14

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 81 - 366 1.8e-73 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43750 AT2G43750 AT3G59760 AT3G59760
fragaria_vesca FvH4_4g10280 FvH4_4g10280 FvH4_4g10280 FvH4_4g10280 FvH4_4g10280
malus_domestica MD06G1007300.v1.1
prunus_persica Prupe.1G102600_v2.0.a1
pyrus_communis pycom06g00640
rosa_chinensis RchiOBHm_Chr4g0405711
rosa_laevigata RLG00000008825
rosa_multiflora Rmu_sc0001200.1_g000039
rosa_roxburghii Rroxscaffold_5G00350200
rosa_rugosa Rorug04G0061800 Rorug04G0062000
rosa_samantha Rh4BG128400 Rh4DG128000
rosa_wichuraiana Rw4G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 580
AccB7I CCANNNNNTGG 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 239
AciI CCGC 4 cut(s) 5, 237, 526, 743
AclI AACGTT 1 cut(s) 1111
AclWI GGATC 1 cut(s) 924
AcsI RAATTY 1 cut(s) 910
AcuI CTGAAG 2 cut(s) 402, 627
AfaI GTAC 3 cut(s) 269, 362, 903
AfiI CCNNNNNNNGG 3 cut(s) 203, 578, 1103
AgsI TTSAA 8 cut(s) 64, 212, 274, 474, 619, 811, 881, 968
AhdI GACNNNNNGTC 1 cut(s) 693
AjnI CCWGG 3 cut(s) 403, 990, 1044
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 3 cut(s) 145, 680, 1051
AlwI GGATC 1 cut(s) 924
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 1096, 1169
AoxI GGCC 1 cut(s) 451
ApoI RAATTY 1 cut(s) 910
AspS9I GGNCC 2 cut(s) 695, 866
AsuC2I CCSGG 2 cut(s) 864, 1072
AvaI CYCGRG 2 cut(s) 1096, 1169
AvaII GGWCC 2 cut(s) 695, 866
BanII GRGCYC 2 cut(s) 81, 219
Bbv12I GWGCWC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 1070
BcgI CGANNNNNNTGC 2 cut(s) 1134, 1168
BciT130I CCWGG 3 cut(s) 405, 992, 1046
BcnI CCSGG 2 cut(s) 864, 1072
BcoDI GTCTC 3 cut(s) 145, 680, 1051
BfaI CTAG 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 580
BlpI GCTNAGC 3 cut(s) 240, 312, 552
Bme1390I CCNGG 5 cut(s) 405, 864, 992, 1046, 1072
Bme18I GGWCC 2 cut(s) 695, 866
BmeRI GACNNNNNGTC 1 cut(s) 693
BmeT110I CYCGRG 2 cut(s) 1096, 1169
BmgT120I GGNCC 2 cut(s) 695, 866
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 5 cut(s) 405, 864, 992, 1046, 1072
BmsI GCATC 2 cut(s) 367, 489
BpmI CTGGAG 3 cut(s) 609, 974, 1041
Bpu10I CCTNAGC 1 cut(s) 130
Bpu1102I GCTNAGC 3 cut(s) 240, 312, 552
BpuEI CTTGAG 2 cut(s) 131, 338
BpuMI CCSGG 2 cut(s) 864, 1072
Bsa29I ATCGAT 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 1051
BsaJI CCNNGG 1 cut(s) 831
BsaXI ACNNNNNCTCC 2 cut(s) 972, 1002
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 578, 1103
Bse1I ACTGG 6 cut(s) 592, 697, 760, 775, 951, 1135
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 3 cut(s) 405, 992, 1046
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 1 cut(s) 831
BseLI CCNNNNNNNGG 3 cut(s) 203, 578, 1103
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 4 cut(s) 144, 254, 543, 690
BseNI ACTGG 6 cut(s) 592, 697, 760, 775, 951, 1135
BseYI CCCAGC 1 cut(s) 1125
BshFI GGCC 1 cut(s) 453
BshVI ATCGAT 1 cut(s) 729
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 2 cut(s) 1096, 1169
BsiSI CCGG 3 cut(s) 160, 864, 1071
BslI CCNNNNNNNGG 3 cut(s) 203, 578, 1103
BsmAI GTCTC 3 cut(s) 145, 680, 1051
BsmBI CGTCTC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 1 cut(s) 453
Bso31I GGTCTC 1 cut(s) 1051
BsoBI CYCGRG 2 cut(s) 1096, 1169
Bsp1286I GDGCHC 2 cut(s) 81, 219
Bsp143I GATC 2 cut(s) 321, 916
Bsp1720I GCTNAGC 3 cut(s) 240, 312, 552
BspACI CCGC 4 cut(s) 5, 237, 526, 743
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 4 cut(s) 143, 253, 544, 691
BspDI ATCGAT 1 cut(s) 729
BspLI GGNNCC 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 1 cut(s) 924
BspTNI GGTCTC 1 cut(s) 1051
BsrBI CCGCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 6 cut(s) 592, 697, 760, 775, 951, 1135
BssECI CCNNGG 1 cut(s) 831
BssMI GATC 2 cut(s) 321, 916
Bst2UI CCWGG 3 cut(s) 405, 992, 1046
Bst4CI ACNGT 3 cut(s) 56, 365, 651
Bst6I CTCTTC 3 cut(s) 88, 378, 1143
BstAPI GCANNNNNTGC 2 cut(s) 305, 464
BstC8I GCNNGC 2 cut(s) 504, 1157
BstDEI CTNAG 5 cut(s) 130, 240, 312, 552, 699
BstDSI CCRYGG 1 cut(s) 831
BstENI CCTNNNNNAGG 1 cut(s) 576
BstKTI GATC 2 cut(s) 324, 919
BstMAI GTCTC 3 cut(s) 145, 680, 1051
BstMBI GATC 2 cut(s) 321, 916
BstMWI GCNNNNNNNGC 9 cut(s) 233, 305, 464, 548, 1031, 1034, 1037, 1165, 1171
BstNI CCWGG 3 cut(s) 405, 992, 1046
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 5 cut(s) 403, 862, 990, 1044, 1070
BstX2I RGATCY 1 cut(s) 916
BstXI CCANNNNNNTGG 2 cut(s) 517, 913
BstYI RGATCY 1 cut(s) 916
Bsu15I ATCGAT 1 cut(s) 729
BsuRI GGCC 1 cut(s) 453
BsuTUI ATCGAT 1 cut(s) 729
BtgI CCRYGG 1 cut(s) 831
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 3 cut(s) 346, 768, 958
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 2 cut(s) 504, 1157
CaiI CAGNNNCTG 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 695, 866
ClaI ATCGAT 1 cut(s) 729
CseI GACGC 1 cut(s) 495
Csp6I GTAC 3 cut(s) 268, 361, 902
CviAII CATG 4 cut(s) 325, 333, 511, 640
CviQI GTAC 3 cut(s) 268, 361, 902
DdeI CTNAG 5 cut(s) 130, 240, 312, 552, 699
DpnI GATC 2 cut(s) 323, 918
DpnII GATC 2 cut(s) 321, 916
DriI GACNNNNNGTC 1 cut(s) 693
Eam1104I CTCTTC 3 cut(s) 88, 378, 1143
Eam1105I GACNNNNNGTC 1 cut(s) 693
EarI CTCTTC 3 cut(s) 88, 378, 1143
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 81, 219
Eco31I GGTCTC 1 cut(s) 1051
Eco47I GGWCC 2 cut(s) 695, 866
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 402, 627
Eco88I CYCGRG 2 cut(s) 1096, 1169
EcoICRI GAGCTC 1 cut(s) 79
EcoNI CCTNNNNNAGG 1 cut(s) 576
EcoRII CCWGG 3 cut(s) 403, 990, 1044
EcoT38I GRGCYC 2 cut(s) 81, 219
Esp3I CGTCTC 1 cut(s) 680
FaeI CATG 4 cut(s) 328, 336, 514, 643
FatI CATG 4 cut(s) 324, 332, 510, 639
FauI CCCGC 2 cut(s) 519, 736
FriOI GRGCYC 2 cut(s) 81, 219
FspBI CTAG 1 cut(s) 983
GsaI CCCAGC 1 cut(s) 1129
GsuI CTGGAG 3 cut(s) 609, 974, 1041
HaeIII GGCC 1 cut(s) 453
HapII CCGG 3 cut(s) 160, 864, 1071
HgaI GACGC 1 cut(s) 495
Hin1II CATG 4 cut(s) 328, 336, 514, 643
HincII GTYRAC 2 cut(s) 42, 564
HindII GTYRAC 2 cut(s) 42, 564
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 5 cut(s) 425, 676, 783, 877, 1141
HpaI GTTAAC 1 cut(s) 564
HpaII CCGG 3 cut(s) 160, 864, 1071
Hpy166II GTNNAC 3 cut(s) 42, 268, 564
Hpy188I TCNGA 2 cut(s) 261, 600
Hpy188III TCNNGA 9 cut(s) 102, 148, 493, 616, 698, 1020, 1096, 1120, 1145
Hpy8I GTNNAC 3 cut(s) 42, 268, 564
HpyAV CCTTC 4 cut(s) 206, 595, 805, 989
HpyCH4III ACNGT 3 cut(s) 56, 365, 651
HpyCH4IV ACGT 1 cut(s) 1111
HpyCH4V TGCA 8 cut(s) 177, 299, 339, 458, 575, 1040, 1052, 1165
HpyF10VI GCNNNNNNNGC 9 cut(s) 233, 305, 464, 548, 1031, 1034, 1037, 1165, 1171
HpyF3I CTNAG 5 cut(s) 130, 240, 312, 552, 699
HpySE526I ACGT 1 cut(s) 1111
Hsp92II CATG 4 cut(s) 328, 336, 514, 643
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 321, 916
LmnI GCTCC 5 cut(s) 548, 590, 648, 890, 1022
LweI GCATC 2 cut(s) 367, 489
MaeI CTAG 1 cut(s) 983
MaeII ACGT 1 cut(s) 1111
MaeIII GTNAC 1 cut(s) 1112
MalI GATC 2 cut(s) 323, 918
MbiI CCGCTC 1 cut(s) 239
MboI GATC 2 cut(s) 321, 916
MboII GAAGA 7 cut(s) 6, 75, 395, 620, 722, 1008, 1160
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 2 cut(s) 81, 219
MluCI AATT 5 cut(s) 594, 631, 806, 885, 910
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 9 cut(s) 28, 109, 139, 531, 713, 879, 949, 982, 1127
MseI TTAA 3 cut(s) 33, 563, 789
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 3 cut(s) 160, 864, 1071
MspR9I CCNGG 5 cut(s) 405, 864, 992, 1046, 1072
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 3 cut(s) 405, 992, 1046
MwoI GCNNNNNNNGC 9 cut(s) 233, 305, 464, 548, 1031, 1034, 1037, 1165, 1171
NciI CCSGG 2 cut(s) 864, 1072
NdeII GATC 2 cut(s) 321, 916
NlaIII CATG 4 cut(s) 328, 336, 514, 643
NlaIV GGNNCC 1 cut(s) 330
NspI RCATGY 1 cut(s) 643
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 5 cut(s) 425, 676, 783, 877, 1141
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 990
PsiI TTATAA 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 81
Psp1406I AACGTT 1 cut(s) 1111
Psp6I CCWGG 3 cut(s) 403, 990, 1044
PspFI CCCAGC 1 cut(s) 1125
PspGI CCWGG 3 cut(s) 403, 990, 1044
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 695, 866
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 916
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 3 cut(s) 269, 362, 903
RsaNI GTAC 3 cut(s) 268, 361, 902
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 3 cut(s) 33, 563, 789
Sau3AI GATC 2 cut(s) 321, 916
Sau96I GGNCC 2 cut(s) 695, 866
ScrFI CCNGG 5 cut(s) 405, 864, 992, 1046, 1072
SduI GDGCHC 2 cut(s) 81, 219
SfaNI GCATC 2 cut(s) 367, 489
SinI GGWCC 2 cut(s) 695, 866
SmlI CTYRAG 2 cut(s) 146, 317
SmoI CTYRAG 2 cut(s) 146, 317
Sse9I AATT 5 cut(s) 594, 631, 806, 885, 910
SsiI CCGC 4 cut(s) 5, 237, 526, 743
SspMI CTAG 1 cut(s) 983
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 5 cut(s) 403, 862, 990, 1044, 1070
TaaI ACNGT 3 cut(s) 56, 365, 651
TaiI ACGT 1 cut(s) 1114
TaqI TCGA 9 cut(s) 103, 120, 729, 781, 825, 974, 1121, 1139, 1144
TasI AATT 5 cut(s) 594, 631, 806, 885, 910
TatI WGTACW 1 cut(s) 267
TauI GCSGC 2 cut(s) 8, 239
TfiI GAWTC 5 cut(s) 425, 676, 783, 877, 1141
Tru1I TTAA 3 cut(s) 33, 563, 789
Tru9I TTAA 3 cut(s) 33, 563, 789
TscAI CASTG 3 cut(s) 346, 775, 958
TspDTI ATGAA 4 cut(s) 451, 668, 775, 948
TspGWI ACGGA 2 cut(s) 27, 848
TspRI CASTG 3 cut(s) 346, 775, 958
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 695, 866
XagI CCTNNNNNAGG 1 cut(s) 576
XapI RAATTY 1 cut(s) 910
XceI RCATGY 1 cut(s) 643
XspI CTAG 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.