Rorug04G0061800

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009750
Physical Location & Seq
Forward (+)
9696054 .. 9697220
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0061800.1

Sequence Viewer

Length: 1167 bp
ATGGCTAATACTACATTGGCAGAGGCGGTTAGTTTCTCGTTTGGCATCTTGTTCGTCATCTCGGGTTTTATAGTGAATCTAGTTCAAGCGATTTGTTTCGTTCTGATTCGGCCTCTATCCAAGAATATACACAGACGGATCAACCAAGTGGTGGCAAAATTGTTATGGCTGGAGGTGGTGTGGCTAGTCGATTGGTGGGCAGGTGTTAAGATCCAAGTACACACAGACGACCCAGAAGCGATGACCCGCTTCATGGGTAAAGAAAATGCTATTGTCATATCCAATTACACAACCAACATTATCGATCAAATTCTTATGTCTGTTCTCGCTCACCGCTCTGGTTCCGTCGGCAAGGTGGTGAGCAGTAAATTGGTGAAATTCGTTCCTACCATTGGTTGGTGGCTGTGGTTTTCTGATAATATATTCCTGGAGAGAATCAATGGTTTGGGTCCAGACCAAGATACATCGGCTCTTTGTGGCCTCAAGGACTTCCCTCTCCCCATTTGGTTGACTCTTTTTCCATCAGGAATAGGTGAGGAAAAGATGTCAACTGAGGTTTTTGTCTCTGCCGTGAAACGCATGCGGCCTTTTACTCCAGCCGTATATGATGTAACAATAGCTTGTAATTCGGATCAACCACCCTCATTGGCAAGACTACTCCTGAGGAAACGACCATCTTATGTTGTGCATATGCACATTAAAAGGCACGACATAATCGATTTACCTAATGAAGATGATGCTGTTGGGCAATGGTGTGAGGATGTGTTTCTGGCCAAGCATGCCTTATTGGAACAACACAGAGCAGACCAAACTTTCGGCGACCACCAAGCACTGCTAGAAAGCTGCTCTAAACCCCCGCCACTCGACTCCATTTGGGTTGTCACCTCCTGGGCACTCCTATTTACATTCTGTGCTCTCAAGTTCCCCCTCTGGTCTTTGCTAGTGCTACTTATTTCATCCTCTGGCTTGTTTTGGTTTCTCAAGTTCCCCTTCCTGTCTTTACTACTACTACTTAAGGCATCCGAGCGCTTGTTTTTGCTTTGCAACTTCCCCCTCTTGTCTTCAGCAGCGTCGCTTATTACATCCTCAGGCTGCTTGTACTTACTCTTGCATTTCCCCATTTGGTCATTACAAGGATGGCTGGTTTATTTCTTAGGCTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0097159 GO:0097708 GO:0098791 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

388

Amino Acids

43.85

Weight (kDa)

7.13

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 221 - 279 7.2e-14 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43750 AT2G43750 AT3G59760 AT3G59760
fragaria_vesca FvH4_4g10280 FvH4_4g10280 FvH4_4g10280 FvH4_4g10280 FvH4_4g10280
malus_domestica MD06G1007300.v1.1
prunus_persica Prupe.1G102600_v2.0.a1
pyrus_communis pycom06g00640
rosa_chinensis RchiOBHm_Chr4g0405711
rosa_laevigata RLG00000008825
rosa_multiflora Rmu_sc0001200.1_g000039
rosa_roxburghii Rroxscaffold_5G00350200
rosa_rugosa Rorug04G0061800 Rorug04G0062000
rosa_samantha Rh4BG128400 Rh4DG128000
rosa_wichuraiana Rw4G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 191
AccB7I CCANNNNNTGG 2 cut(s) 151, 396
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 5 cut(s) 26, 247, 334, 583, 857
AclWI GGATC 3 cut(s) 146, 205, 639
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 2 cut(s) 309, 377
AcuI CTGAAG 1 cut(s) 1047
AfaI GTAC 2 cut(s) 219, 1100
AfeI AGCGCT 1 cut(s) 1028
AfiI CCNNNNNNNGG 4 cut(s) 151, 253, 392, 396
AflII CTTAAG 1 cut(s) 1013
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 2 cut(s) 426, 887
AluBI AGCT 2 cut(s) 620, 843
AluI AGCT 2 cut(s) 620, 843
Alw21I GWGCWC 1 cut(s) 916
Alw26I GTCTC 1 cut(s) 568
AlwI GGATC 3 cut(s) 146, 205, 639
Ama87I CYCGRG 1 cut(s) 61
Aor51HI AGCGCT 1 cut(s) 1028
AoxI GGCC 4 cut(s) 110, 478, 584, 771
ApeKI GCWGC 3 cut(s) 843, 1067, 1092
ApoI RAATTY 2 cut(s) 309, 377
ArsI GACNNNNNNTTYG 2 cut(s) 797, 829
AspLEI GCGC 1 cut(s) 1029
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 5 cut(s) 323, 370, 385, 545, 874
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 449
AxyI CCTNAGG 2 cut(s) 662, 1087
BaeGI GKGCMC 1 cut(s) 895
BalI TGGCCA 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 1053
Bbv12I GWGCWC 1 cut(s) 916
BbvI GCAGC 3 cut(s) 830, 1079, 1079
BccI CCATC 3 cut(s) 529, 682, 1131
BceAI ACGGC 2 cut(s) 554, 584
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 2 cut(s) 428, 889
BcoDI GTCTC 1 cut(s) 568
BfaI CTAG 4 cut(s) 80, 185, 836, 941
BfoI RGCGCY 1 cut(s) 1030
BfrI CTTAAG 1 cut(s) 1013
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 4 cut(s) 584, 844, 1068, 1093
BlsI GCNGC 4 cut(s) 585, 845, 1069, 1094
Bme1390I CCNGG 2 cut(s) 428, 889
Bme18I GGWCC 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 343, 450
BmrFI CCNGG 2 cut(s) 428, 889
BmsI GCATC 3 cut(s) 54, 727, 1028
BpiI GAAGAC 1 cut(s) 1053
BpmI CTGGAG 3 cut(s) 191, 449, 579
BpuEI CTTGAG 3 cut(s) 467, 902, 965
Bsa29I ATCGAT 2 cut(s) 303, 717
BsaJI CCNNGG 1 cut(s) 888
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 253, 392, 396
Bse21I CCTNAGG 2 cut(s) 662, 1087
Bse3DI GCAATG 1 cut(s) 755
BseBI CCWGG 2 cut(s) 428, 889
BseCI ATCGAT 2 cut(s) 303, 717
BseDI CCNNGG 1 cut(s) 888
BseGI GGATG 5 cut(s) 766, 956, 1019, 1082, 1142
BseLI CCNNNNNNNGG 4 cut(s) 151, 253, 392, 396
BseMI GCAATG 1 cut(s) 755
BseMII CTCAG 3 cut(s) 543, 653, 1101
BseSI GKGCMC 1 cut(s) 895
BseXI GCAGC 3 cut(s) 830, 1079, 1079
BshFI GGCC 4 cut(s) 112, 480, 586, 773
BshVI ATCGAT 2 cut(s) 303, 717
BsiHKAI GWGCWC 1 cut(s) 916
BsiHKCI CYCGRG 1 cut(s) 61
BslI CCNNNNNNNGG 4 cut(s) 151, 253, 392, 396
BsmAI GTCTC 1 cut(s) 568
BsnI GGCC 4 cut(s) 112, 480, 586, 773
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 895, 916
Bsp143I GATC 4 cut(s) 138, 210, 304, 631
BspACI CCGC 5 cut(s) 26, 247, 334, 583, 857
BspANI GGCC 4 cut(s) 112, 480, 586, 773
BspCNI CTCAG 3 cut(s) 544, 654, 1100
BspDI ATCGAT 2 cut(s) 303, 717
BspLI GGNNCC 2 cut(s) 343, 450
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 3 cut(s) 146, 205, 639
BspTI CTTAAG 1 cut(s) 1013
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 755
BssECI CCNNGG 1 cut(s) 888
BssMI GATC 4 cut(s) 138, 210, 304, 631
Bst2UI CCWGG 2 cut(s) 428, 889
BstAFI CTTAAG 1 cut(s) 1013
BstC8I GCNNGC 3 cut(s) 581, 780, 1160
BstDEI CTNAG 4 cut(s) 552, 662, 1087, 1153
BstF5I GGATG 5 cut(s) 766, 956, 1019, 1082, 1142
BstH2I RGCGCY 1 cut(s) 1030
BstHHI GCGC 1 cut(s) 1029
BstKTI GATC 4 cut(s) 141, 213, 307, 634
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 4 cut(s) 138, 210, 304, 631
BstMWI GCNNNNNNNGC 1 cut(s) 779
BstNI CCWGG 2 cut(s) 428, 889
BstNSI RCATGY 2 cut(s) 583, 782
BstSCI CCNGG 2 cut(s) 426, 887
BstSLI GKGCMC 1 cut(s) 895
BstV1I GCAGC 3 cut(s) 830, 1079, 1079
BstV2I GAAGAC 1 cut(s) 1053
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
Bsu15I ATCGAT 2 cut(s) 303, 717
Bsu36I CCTNAGG 2 cut(s) 662, 1087
BsuRI GGCC 4 cut(s) 112, 480, 586, 773
BsuTUI ATCGAT 2 cut(s) 303, 717
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 5 cut(s) 766, 956, 1019, 1082, 1142
BtsI GCAGTG 1 cut(s) 830
BtsIMutI CAGTG 1 cut(s) 830
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 3 cut(s) 581, 780, 1160
CfoI GCGC 1 cut(s) 1029
Cfr13I GGNCC 1 cut(s) 449
ClaI ATCGAT 2 cut(s) 303, 717
CseI GACGC 1 cut(s) 1059
Csp6I GTAC 2 cut(s) 218, 1099
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviAII CATG 3 cut(s) 253, 580, 779
CviQI GTAC 2 cut(s) 218, 1099
DdeI CTNAG 4 cut(s) 552, 662, 1087, 1153
DpnI GATC 4 cut(s) 140, 212, 306, 633
DpnII GATC 4 cut(s) 138, 210, 304, 631
EaeI YGGCCR 1 cut(s) 771
Eco47I GGWCC 1 cut(s) 449
Eco47III AGCGCT 1 cut(s) 1028
Eco57I CTGAAG 1 cut(s) 1047
Eco81I CCTNAGG 2 cut(s) 662, 1087
Eco88I CYCGRG 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 426, 887
FaeI CATG 3 cut(s) 256, 583, 782
FalI AAGNNNNNCTT 4 cut(s) 767, 799, 974, 1006
FatI CATG 3 cut(s) 252, 579, 778
FauI CCCGC 2 cut(s) 254, 864
FauNDI CATATG 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 584, 844, 1068, 1093
FokI GGATG 5 cut(s) 773, 943, 1006, 1069, 1149
Fsp4HI GCNGC 4 cut(s) 584, 844, 1068, 1093
FspBI CTAG 4 cut(s) 80, 185, 836, 941
GlaI GCGC 1 cut(s) 1028
GluI GCNGC 4 cut(s) 584, 844, 1068, 1093
GsuI CTGGAG 3 cut(s) 191, 449, 579
HaeII RGCGCY 1 cut(s) 1030
HaeIII GGCC 4 cut(s) 112, 480, 586, 773
HgaI GACGC 1 cut(s) 1059
HhaI GCGC 1 cut(s) 1029
Hin1II CATG 3 cut(s) 256, 583, 782
Hin6I GCGC 1 cut(s) 1027
HinP1I GCGC 1 cut(s) 1027
HincII GTYRAC 2 cut(s) 510, 549
HindII GTYRAC 2 cut(s) 510, 549
HinfI GANTC 5 cut(s) 76, 106, 435, 511, 866
HphI GGTGA 5 cut(s) 323, 370, 385, 545, 874
Hpy166II GTNNAC 3 cut(s) 220, 510, 549
Hpy188I TCNGA 4 cut(s) 105, 415, 631, 1024
Hpy188III TCNNGA 3 cut(s) 452, 525, 661
Hpy8I GTNNAC 3 cut(s) 220, 510, 549
Hpy99I CGWCG 2 cut(s) 350, 1075
HpyAV CCTTC 1 cut(s) 1000
HpyCH4V TGCA 4 cut(s) 688, 694, 1044, 1111
HpyF10VI GCNNNNNNNGC 1 cut(s) 779
HpyF3I CTNAG 4 cut(s) 552, 662, 1087, 1153
Hsp92II CATG 3 cut(s) 256, 583, 782
HspAI GCGC 1 cut(s) 1027
Kzo9I GATC 4 cut(s) 138, 210, 304, 631
Lsp1109I GCAGC 3 cut(s) 830, 1079, 1079
LweI GCATC 3 cut(s) 54, 727, 1028
MaeI CTAG 4 cut(s) 80, 185, 836, 941
MaeIII GTNAC 2 cut(s) 610, 880
MalI GATC 4 cut(s) 140, 212, 306, 633
MbiI CCGCTC 1 cut(s) 336
MboI GATC 4 cut(s) 138, 210, 304, 631
MboII GAAGA 2 cut(s) 743, 1053
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 895, 916
MlsI TGGCCA 1 cut(s) 773
MluCI AATT 6 cut(s) 158, 283, 309, 368, 377, 625
MluNI TGGCCA 1 cut(s) 773
MlyI GAGTC 2 cut(s) 505, 860
Mox20I TGGCCA 1 cut(s) 773
MscI TGGCCA 1 cut(s) 773
MseI TTAA 3 cut(s) 207, 699, 1014
Msp20I TGGCCA 1 cut(s) 773
MspCI CTTAAG 1 cut(s) 1013
MspR9I CCNGG 2 cut(s) 428, 889
MvaI CCWGG 2 cut(s) 428, 889
MwoI GCNNNNNNNGC 1 cut(s) 779
NdeI CATATG 1 cut(s) 690
NdeII GATC 4 cut(s) 138, 210, 304, 631
NlaIII CATG 3 cut(s) 256, 583, 782
NlaIV GGNNCC 2 cut(s) 343, 450
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 2 cut(s) 583, 782
PaeI GCATGC 2 cut(s) 583, 782
PaqCI CACCTGC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 714
PfeI GAWTC 3 cut(s) 76, 106, 435
PflMI CCANNNNNTGG 2 cut(s) 151, 396
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 4 cut(s) 585, 845, 1069, 1094
PleI GAGTC 2 cut(s) 505, 860
PpsI GAGTC 2 cut(s) 505, 860
Psp6I CCWGG 2 cut(s) 426, 887
PspGI CCWGG 2 cut(s) 426, 887
PspN4I GGNNCC 2 cut(s) 343, 450
PspPI GGNCC 1 cut(s) 449
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 2 cut(s) 219, 1100
RsaNI GTAC 2 cut(s) 218, 1099
SaqAI TTAA 3 cut(s) 207, 699, 1014
SatI GCNGC 4 cut(s) 584, 844, 1068, 1093
Sau3AI GATC 4 cut(s) 138, 210, 304, 631
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 2 cut(s) 505, 860
ScrFI CCNGG 2 cut(s) 428, 889
SduI GDGCHC 2 cut(s) 895, 916
SetI ASST 9 cut(s) 177, 205, 357, 535, 558, 622, 727, 845, 887
SfaNI GCATC 3 cut(s) 54, 727, 1028
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 4 cut(s) 482, 917, 980, 1013
SmoI CTYRAG 4 cut(s) 482, 917, 980, 1013
SphI GCATGC 2 cut(s) 583, 782
Sse9I AATT 6 cut(s) 158, 283, 309, 368, 377, 625
SsiI CCGC 5 cut(s) 26, 247, 334, 583, 857
SspMI CTAG 4 cut(s) 80, 185, 836, 941
StyD4I CCNGG 2 cut(s) 426, 887
TaqI TCGA 4 cut(s) 189, 303, 717, 864
TasI AATT 6 cut(s) 158, 283, 309, 368, 377, 625
TatI WGTACW 2 cut(s) 217, 1098
TauI GCSGC 1 cut(s) 586
TfiI GAWTC 3 cut(s) 76, 106, 435
Tru1I TTAA 3 cut(s) 207, 699, 1014
Tru9I TTAA 3 cut(s) 207, 699, 1014
TscAI CASTG 1 cut(s) 837
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 3 cut(s) 843, 1067, 1092
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 3 cut(s) 241, 744, 945
TspGWI ACGGA 2 cut(s) 151, 334
TspRI CASTG 1 cut(s) 837
Van91I CCANNNNNTGG 2 cut(s) 151, 396
Vha464I CTTAAG 1 cut(s) 1013
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 2 cut(s) 309, 377
XceI RCATGY 2 cut(s) 583, 782
XspI CTAG 4 cut(s) 80, 185, 836, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.