pycom06g00640

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
581854 .. 588606
6753 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00640.2

Sequence Viewer

Length: 1194 bp
ATGGGTTCTTCTTCCGCTTCTCTGATCAATCCGCTGACATCATCCTCCCTCTCCGGCCCCTCGGAGGTCGCTGCTCCCATACGGTTCTGGGCGGCGTGCCCCACCATGACTACCGGCCTAAGGTCCACCAGTATAACCAAGATCAATGGTTTGAGGCTGAAAGGCAAGTCTTGGTCTTCGTCTGTGGTGTGCAAGGCTGTGTCTGTGAAGCCGCAAACTGCCGTTGAAGGTCTCAACATTGCCGAAGATGTCACTCAGCTTATTGGGAAAACACCAATGGTGTACCTGAATAATATTGTAAAGGGGTCAGTTGCAAATATTGCTGCCAAGCTTGAGATTATGGAGCCATGTTGCAGTGTCAAGGACAGAATAGGTTACAGTATGATAACTGATGCTGAGCAAAGAGGACTCATAAAGCCTGGACAGAGTGTCTTGGTGGAACCCACGAGTGGAAACACAGGCATTGGCCTTGCATTTATAGCTGCAACTAAAGGATATAAACTCATCTTGACAATGCCAGCTTCAATGAGTTTGGAGAGAAGGGTTCTTTTAAAGGCATTTGGAGCTGAGCTTGTTTTGACTGATTCAGCAAAGGGAATGAAGGGAGCAGTTCAGAAAGCTGAAGAAATATGCAATAGTACTCCAAATGCATACATGCTTCAACAGTTCGACAACCCTGCTAATCCTAAGATACACTATGAGACAACTGGTCCAGAGATCTGGGAAGATACAAAAGGCAAGGTGGATATATTTGTCGGAGGAATTGGAACAGGTGGAACCATTTCTGGTGTAGGACGGTTCCTTAAAGAGAAAAATCCTAAAGTAAAGATTATTGGCGTAGAACCAACAGAAAGCAACATCCTTTCAGGTGGAAAGCCAGGTCCCCACAAGATTCAAGGAATTGGAGCTGGATTTATACCTAGAAATTTGCACCAGGATGTTGTCGATGAAATTATAGAGATCTCAAGTGATGAAGCTGTTGAAACTGCAAAGCAATTAGCACTCCAGGAAGGCTTGTTGGTTGGGATTTCTTCAGGAGCAGCTGCTGCTGCTGCAATCAAGGTTGGTAAGAGGCCTGAGAATGCAGGGAAGCTTATAGCGGTAGTCTTTCCGAGCTTTGGTGAACGTTATCTCTCCACAATTCTTTTCCAGTCAATCAGAGAAGAATGTGAGAAGATGCAACCGGAGCCATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

398

Amino Acids

41.95

Weight (kDa)

8.59

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009750)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 15, 32, 92, 212, 1100
AclI AACGTT 1 cut(s) 1126
AcsI RAATTY 1 cut(s) 925
AcuI CTGAAG 2 cut(s) 642, 1017
AfaI GTAC 2 cut(s) 284, 640
AfiI CCNNNNNNNGG 4 cut(s) 64, 120, 449, 1118
AgsI TTSAA 5 cut(s) 227, 525, 662, 896, 983
AhdI GACNNNNNGTC 2 cut(s) 428, 708
AjnI CCWGG 4 cut(s) 418, 877, 933, 1005
Alw26I GTCTC 2 cut(s) 236, 695
AlwNI CAGNNNCTG 1 cut(s) 1046
AoxI GGCC 4 cut(s) 55, 115, 466, 1073
ApeKI GCWGC 8 cut(s) 71, 323, 482, 1040, 1043, 1046, 1049, 1052
ApoI RAATTY 1 cut(s) 925
Asp700I GAANNNNTTC 1 cut(s) 781
AspS9I GGNCC 4 cut(s) 56, 123, 710, 881
AsuHPI GGTGA 1 cut(s) 1133
AvaII GGWCC 3 cut(s) 123, 710, 881
AxyI CCTNAGG 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 101
BauI CACGAG 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 8 cut(s) 58, 310, 469, 1030, 1033, 1036, 1039, 1052
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 4 cut(s) 420, 879, 935, 1007
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 236, 695
BfaI CTAG 1 cut(s) 921
BglII AGATCT 2 cut(s) 717, 960
BlpI GCTNAGC 2 cut(s) 396, 567
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 4 cut(s) 420, 879, 935, 1007
Bme18I GGWCC 3 cut(s) 123, 710, 881
BmeRI GACNNNNNGTC 2 cut(s) 428, 708
BmgT120I GGNCC 4 cut(s) 56, 123, 710, 881
BmiI GGNNCC 7 cut(s) 58, 345, 441, 778, 800, 883, 1188
BmrFI CCNGG 4 cut(s) 420, 879, 935, 1007
BmsI GCATC 2 cut(s) 382, 1167
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 989
Bpu1102I GCTNAGC 2 cut(s) 396, 567
BpuEI CTTGAG 2 cut(s) 353, 949
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 1183
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 120, 449, 1118
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 3 cut(s) 129, 712, 1150
Bse21I CCTNAGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 4 cut(s) 420, 879, 935, 1007
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 41, 858, 943
BseLI CCNNNNNNNGG 4 cut(s) 64, 120, 449, 1118
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 4 cut(s) 269, 387, 558, 1068
BseNI ACTGG 3 cut(s) 129, 712, 1150
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 8 cut(s) 58, 310, 469, 1030, 1033, 1036, 1039, 1052
BshFI GGCC 4 cut(s) 57, 117, 468, 1075
BsiSI CCGG 3 cut(s) 54, 114, 1184
BslFI GGGAC 1 cut(s) 867
BslI CCNNNNNNNGG 4 cut(s) 64, 120, 449, 1118
BsmAI GTCTC 2 cut(s) 236, 695
BsmFI GGGAC 1 cut(s) 867
BsmI GAATGC 1 cut(s) 1087
BsnI GGCC 4 cut(s) 57, 117, 468, 1075
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 4 cut(s) 24, 141, 717, 960
Bsp1720I GCTNAGC 2 cut(s) 396, 567
BspACI CCGC 5 cut(s) 15, 32, 92, 212, 1100
BspANI GGCC 4 cut(s) 57, 117, 468, 1075
BspCNI CTCAG 4 cut(s) 268, 388, 559, 1069
BspLI GGNNCC 7 cut(s) 58, 345, 441, 778, 800, 883, 1188
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 3 cut(s) 129, 712, 1150
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 4 cut(s) 24, 141, 717, 960
BssSI CACGAG 1 cut(s) 445
Bst2BI CACGAG 1 cut(s) 445
Bst2UI CCWGG 4 cut(s) 420, 879, 935, 1007
Bst4CI ACNGT 4 cut(s) 84, 380, 666, 798
BstAPI GCANNNNNTGC 2 cut(s) 320, 1046
BstC8I GCNNGC 2 cut(s) 97, 519
BstDEI CTNAG 6 cut(s) 119, 255, 396, 567, 687, 1077
BstF5I GGATG 3 cut(s) 41, 858, 943
BstKTI GATC 4 cut(s) 27, 144, 720, 963
BstMAI GTCTC 2 cut(s) 236, 695
BstMBI GATC 4 cut(s) 24, 141, 717, 960
BstMWI GCNNNNNNNGC 7 cut(s) 320, 479, 563, 1046, 1049, 1052, 1186
BstNI CCWGG 4 cut(s) 420, 879, 935, 1007
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 4 cut(s) 418, 877, 933, 1005
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 8 cut(s) 58, 310, 469, 1030, 1033, 1036, 1039, 1052
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 2 cut(s) 717, 960
BstXI CCANNNNNNTGG 1 cut(s) 720
BstYI RGATCY 2 cut(s) 717, 960
Bsu36I CCTNAGG 1 cut(s) 119
BsuRI GGCC 4 cut(s) 57, 117, 468, 1075
BtsCI GGATG 3 cut(s) 41, 858, 943
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 97, 519
CaiI CAGNNNCTG 1 cut(s) 1046
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 4 cut(s) 56, 123, 710, 881
Csp6I GTAC 2 cut(s) 283, 639
CviAII CATG 4 cut(s) 106, 348, 655, 1191
CviQI GTAC 2 cut(s) 283, 639
DdeI CTNAG 6 cut(s) 119, 255, 396, 567, 687, 1077
DpnI GATC 4 cut(s) 26, 143, 719, 962
DpnII GATC 4 cut(s) 24, 141, 717, 960
DraI TTTAAA 1 cut(s) 552
DriI GACNNNNNGTC 2 cut(s) 428, 708
Eam1105I GACNNNNNGTC 2 cut(s) 428, 708
Eco147I AGGCCT 1 cut(s) 1075
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 3 cut(s) 123, 710, 881
Eco57I CTGAAG 2 cut(s) 642, 1017
Eco81I CCTNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 881
EcoRII CCWGG 4 cut(s) 418, 877, 933, 1005
EcoT22I ATGCAT 1 cut(s) 652
FaeI CATG 4 cut(s) 109, 351, 658, 1194
FaqI GGGAC 1 cut(s) 867
FatI CATG 4 cut(s) 105, 347, 654, 1190
FbaI TGATCA 1 cut(s) 24
FokI GGATG 3 cut(s) 28, 845, 950
FspBI CTAG 1 cut(s) 921
GsuI CTGGAG 1 cut(s) 989
HaeIII GGCC 4 cut(s) 57, 117, 468, 1075
HapII CCGG 3 cut(s) 54, 114, 1184
Hin1II CATG 4 cut(s) 109, 351, 658, 1194
HindIII AAGCTT 2 cut(s) 329, 1091
HinfI GANTC 3 cut(s) 408, 584, 892
HpaII CCGG 3 cut(s) 54, 114, 1184
HphI GGTGA 1 cut(s) 1133
Hpy166II GTNNAC 3 cut(s) 126, 283, 1124
Hpy188I TCNGA 6 cut(s) 24, 64, 615, 758, 1113, 1160
Hpy188III TCNNGA 3 cut(s) 508, 713, 1035
Hpy8I GTNNAC 3 cut(s) 126, 283, 1124
HpyAV CCTTC 4 cut(s) 221, 534, 595, 1004
HpyCH4III ACNGT 4 cut(s) 84, 380, 666, 798
HpyCH4IV ACGT 1 cut(s) 1126
HpyF10VI GCNNNNNNNGC 7 cut(s) 320, 479, 563, 1046, 1049, 1052, 1186
HpyF3I CTNAG 6 cut(s) 119, 255, 396, 567, 687, 1077
HpySE526I ACGT 1 cut(s) 1126
Hsp92II CATG 4 cut(s) 109, 351, 658, 1194
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 4 cut(s) 24, 141, 717, 960
LmnI GCTCC 7 cut(s) 79, 343, 563, 605, 905, 1037, 1186
Lsp1109I GCAGC 8 cut(s) 58, 310, 469, 1030, 1033, 1036, 1039, 1052
LweI GCATC 2 cut(s) 382, 1167
MaeI CTAG 1 cut(s) 921
MaeII ACGT 1 cut(s) 1126
MaeIII GTNAC 2 cut(s) 250, 374
MalI GATC 4 cut(s) 26, 143, 719, 962
MboI GATC 4 cut(s) 24, 141, 717, 960
MboII GAAGA 8 cut(s) 3, 168, 257, 635, 737, 1023, 1175, 1186
MflI RGATCY 2 cut(s) 717, 960
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 6 cut(s) 762, 900, 925, 951, 995, 1140
MlyI GAGTC 1 cut(s) 402
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 8 cut(s) 55, 58, 59, 70, 147, 398, 752, 1065
Mph1103I ATGCAT 1 cut(s) 652
MroXI GAANNNNTTC 1 cut(s) 781
MseI TTAA 2 cut(s) 551, 804
MslI CAYNNNNRTG 1 cut(s) 936
MspA1I CMGCKG 2 cut(s) 34, 1043
MspI CCGG 3 cut(s) 54, 114, 1184
MspR9I CCNGG 4 cut(s) 420, 879, 935, 1007
Mva1269I GAATGC 1 cut(s) 1087
MvaI CCWGG 4 cut(s) 420, 879, 935, 1007
MwoI GCNNNNNNNGC 7 cut(s) 320, 479, 563, 1046, 1049, 1052, 1186
NdeII GATC 4 cut(s) 24, 141, 717, 960
NlaIII CATG 4 cut(s) 109, 351, 658, 1194
NlaIV GGNNCC 7 cut(s) 58, 345, 441, 778, 800, 883, 1188
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 1 cut(s) 658
PceI AGGCCT 1 cut(s) 1075
PctI GAATGC 1 cut(s) 1087
PdmI GAANNNNTTC 1 cut(s) 781
PfeI GAWTC 2 cut(s) 584, 892
PfoI TCCNGGA 1 cut(s) 1005
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PpuMI RGGWCCY 1 cut(s) 881
Psp1406I AACGTT 1 cut(s) 1126
Psp5II RGGWCCY 1 cut(s) 881
Psp6I CCWGG 4 cut(s) 418, 877, 933, 1005
PspGI CCWGG 4 cut(s) 418, 877, 933, 1005
PspN4I GGNNCC 7 cut(s) 58, 345, 441, 778, 800, 883, 1188
PspPI GGNCC 4 cut(s) 56, 123, 710, 881
PspPPI RGGWCCY 1 cut(s) 881
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 2 cut(s) 717, 960
PvuII CAGCTG 1 cut(s) 1043
RsaI GTAC 2 cut(s) 284, 640
RsaNI GTAC 2 cut(s) 283, 639
RseI CAYNNNNRTG 1 cut(s) 936
SaqAI TTAA 2 cut(s) 551, 804
Sau3AI GATC 4 cut(s) 24, 141, 717, 960
Sau96I GGNCC 4 cut(s) 56, 123, 710, 881
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 1 cut(s) 402
ScrFI CCNGG 4 cut(s) 420, 879, 935, 1007
SduI GDGCHC 1 cut(s) 101
SfaNI GCATC 2 cut(s) 382, 1167
SinI GGWCC 3 cut(s) 123, 710, 881
SmiMI CAYNNNNRTG 1 cut(s) 936
SmlI CTYRAG 2 cut(s) 332, 964
SmoI CTYRAG 2 cut(s) 332, 964
Sse9I AATT 6 cut(s) 762, 900, 925, 951, 995, 1140
SseBI AGGCCT 1 cut(s) 1075
SsiI CCGC 5 cut(s) 15, 32, 92, 212, 1100
SspI AATATT 2 cut(s) 295, 319
SspMI CTAG 1 cut(s) 921
StuI AGGCCT 1 cut(s) 1075
StyD4I CCNGG 4 cut(s) 418, 877, 933, 1005
TaaI ACNGT 4 cut(s) 84, 380, 666, 798
TaiI ACGT 1 cut(s) 1129
TaqI TCGA 2 cut(s) 669, 945
TasI AATT 6 cut(s) 762, 900, 925, 951, 995, 1140
TatI WGTACW 1 cut(s) 638
TauI GCSGC 2 cut(s) 95, 214
TfiI GAWTC 2 cut(s) 584, 892
Tru1I TTAA 2 cut(s) 551, 804
Tru9I TTAA 2 cut(s) 551, 804
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 8 cut(s) 71, 323, 482, 1040, 1043, 1046, 1049, 1052
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 614, 963, 987
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 3 cut(s) 123, 710, 881
XapI RAATTY 1 cut(s) 925
XceI RCATGY 1 cut(s) 658
XmnI GAANNNNTTC 1 cut(s) 781
XspI CTAG 1 cut(s) 921
ZrmI AGTACT 1 cut(s) 640
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.