Prupe.1G102600_v2.0.a1

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009750
Physical Location & Seq
Forward (+)
8204490 .. 8214876
10387 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G102600.1

Sequence Viewer

Length: 1203 bp
ATGGGCTCTGCTTCTCTGATCAATCCGTTGACATCCTCGCTCTGCAGCCCAAAATCAGACCTCACAGCTCCCAAACAGCAATGGGTGCTGGGCGTGGGCCCCGCCACCCTTACGTCTCTGAGCGTAAGGTCCAACAACAAGAGCAACAGCAAGAGCAAGCGCCAGATAGGGAAGCCTTCTTCAGTTTCCTCTGTGGTGTGCAAGGCTGTTTCTGTGACGCCACAGACCGCTGTTGAGGGTCTCAACATTGCCGAAGATGTCACTCAGCTTATTGGAAAAACACCGATGGTGTACCTGAATAACATGGTAAAGGGGTCTGTTGCAAACATTGCTGCAAAGCTTGAGATTATGGAGCCATGTTGCAGTGTCAAGGACAGGATAGGGTACAGTATGATAATTGATGCTGAGCAAAGAGGACTTATAAAGCCTGGACAGAGTGTTCTGGTGGAACCCACTAGTGGAAACACAGGCATTGGGCTTGCATTTATTGCTGCCACTAAAGGATATAAACTCATCTTGACAATGCCAGCTTCAATGAGTTTGGAGAGAAGGGTTCTACTAAAGGCATTTGGAGCTGAGCTTGTTTTGACTGATTCAGCAAAGGGAATGAAGGGAGCAGTTCAGAAAGCTGAAGAAATATTCAAAAGTACACCCAATGCATACATGCTTCAACAGTTTGACAATCCTGCTAATCCTAAGATACACTATGAGACAACTGGTCCAGAGATCTGGGAAGATACAAGAGGCAAAGTGGATATATTTGTTGGAGGAATTGGAACTGGTGGAACCATTTCTGGGGTAGGACGATTCCTTAAAGAGAAAAATCCTAAAATAAAGATTATTGGTGTAGAACCCTCGGAAAGCAACATCCTTTCAGGTGGAAAGCCCGGTCCCCACAAGATTCAAGGGATTGGAGCTGGATTTATACCTAGAAATTTGCACCAGGATGTTGTCGATGAAATTATAGAGATCTCAAGTGATGAAGCTGTTGAAACCGCGAAGCAATTAGCACTCCAGGAAGGCTTGTTGGTTGGCATTTCTTCCGGGGCTGCTGCTGCTGCTGCCCTCAAGGTTGGTAAGAGACCTGAAAATGCAGGGAAGCTTATCACGGTAGTGTTTCCAAGTTTCGGTGAACGATATCTCTCCACCATACTTTTCCAGTCAATCAGAGAAGAATGTGAGAAAATGCAACCCGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000096 GO:0000097 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009526 GO:0009532 GO:0009536 GO:0009566 GO:0009567 GO:0009570 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0019953 GO:0022414 GO:0030154 GO:0030170 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0036094 GO:0040007 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046394 GO:0046686 GO:0048037 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050662 GO:0050896 GO:0051704 GO:0060560 GO:0070279 GO:0071704 GO:0071840 GO:0097159 GO:0097708 GO:0098791 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

401

Amino Acids

42.4

Weight (kDa)

8.9

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43750 AT2G43750 AT3G59760 AT3G59760
fragaria_vesca FvH4_4g10280 FvH4_4g10280 FvH4_4g10280 FvH4_4g10280 FvH4_4g10280
malus_domestica MD06G1007300.v1.1
prunus_persica Prupe.1G102600_v2.0.a1
pyrus_communis pycom06g00640
rosa_chinensis RchiOBHm_Chr4g0405711
rosa_laevigata RLG00000008825
rosa_multiflora Rmu_sc0001200.1_g000039
rosa_roxburghii Rroxscaffold_5G00350200
rosa_rugosa Rorug04G0061800 Rorug04G0062000
rosa_samantha Rh4BG128400 Rh4DG128000
rosa_wichuraiana Rw4G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AccII CGCG 1 cut(s) 998
AciI CCGC 3 cut(s) 102, 228, 996
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 2 cut(s) 165, 651
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 3 cut(s) 293, 386, 649
AfiI CCNNNNNNNGG 3 cut(s) 458, 795, 1127
AgsI TTSAA 5 cut(s) 534, 643, 671, 905, 992
AhdI GACNNNNNGTC 1 cut(s) 717
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 3 cut(s) 427, 942, 1014
AleI CACNNNNGTG 1 cut(s) 1112
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
Alw26I GTCTC 4 cut(s) 120, 245, 704, 1075
AoxI GGCC 1 cut(s) 97
ApaI GGGCCC 1 cut(s) 101
ApeKI GCWGC 8 cut(s) 45, 332, 491, 1049, 1052, 1055, 1058, 1061
ApoI RAATTY 1 cut(s) 934
Asp700I GAANNNNTTC 1 cut(s) 790
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 5 cut(s) 97, 98, 129, 719, 890
AsuC2I CCSGG 2 cut(s) 888, 1045
AsuHPI GGTGA 1 cut(s) 1142
AvaII GGWCC 3 cut(s) 129, 719, 890
BaeGI GKGCMC 1 cut(s) 101
BanII GRGCYC 2 cut(s) 8, 101
BbvI GCAGC 8 cut(s) 57, 319, 478, 1036, 1039, 1042, 1045, 1048
BccI CCATC 1 cut(s) 280
BciT130I CCWGG 3 cut(s) 429, 944, 1016
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 2 cut(s) 888, 1045
BcoDI GTCTC 4 cut(s) 120, 245, 704, 1075
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 2 cut(s) 456, 930
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 163
BglII AGATCT 2 cut(s) 726, 969
BisI GCNGC 8 cut(s) 46, 333, 492, 1050, 1053, 1056, 1059, 1062
BlpI GCTNAGC 2 cut(s) 405, 576
BlsI GCNGC 8 cut(s) 47, 334, 493, 1051, 1054, 1057, 1060, 1063
Bme1390I CCNGG 5 cut(s) 429, 888, 944, 1016, 1045
Bme18I GGWCC 3 cut(s) 129, 719, 890
BmeRI GACNNNNNGTC 1 cut(s) 717
BmgT120I GGNCC 5 cut(s) 97, 98, 129, 719, 890
BmiI GGNNCC 6 cut(s) 99, 100, 354, 450, 787, 892
BmrFI CCNGG 5 cut(s) 429, 888, 944, 1016, 1045
BmsI GCATC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 998
Bpu1102I GCTNAGC 2 cut(s) 405, 576
BpuEI CTTGAG 3 cut(s) 362, 958, 1052
BpuMI CCSGG 2 cut(s) 888, 1045
BsaHI GRCGYC 1 cut(s) 218
BsaI GGTCTC 2 cut(s) 245, 1075
BsaJI CCNNGG 2 cut(s) 855, 1044
Bsc4I CCNNNNNNNGG 3 cut(s) 458, 795, 1127
Bse1I ACTGG 3 cut(s) 721, 784, 1159
Bse3DI GCAATG 3 cut(s) 86, 246, 327
BseBI CCWGG 3 cut(s) 429, 944, 1016
BseDI CCNNGG 2 cut(s) 855, 1044
BseGI GGATG 3 cut(s) 32, 867, 952
BseLI CCNNNNNNNGG 3 cut(s) 458, 795, 1127
BseMI GCAATG 3 cut(s) 86, 246, 327
BseMII CTCAG 4 cut(s) 110, 278, 396, 567
BseNI ACTGG 3 cut(s) 721, 784, 1159
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 8 cut(s) 57, 319, 478, 1036, 1039, 1042, 1045, 1048
BseYI CCCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 998
BshFI GGCC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 888, 1044
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 3 cut(s) 458, 795, 1127
BsmAI GTCTC 4 cut(s) 120, 245, 704, 1075
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 876
BsnI GGCC 1 cut(s) 99
Bso31I GGTCTC 2 cut(s) 245, 1075
Bsp120I GGGCCC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 8, 101
Bsp143I GATC 3 cut(s) 18, 726, 969
Bsp1720I GCTNAGC 2 cut(s) 405, 576
BspACI CCGC 3 cut(s) 102, 228, 996
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 4 cut(s) 111, 277, 397, 568
BspFNI CGCG 1 cut(s) 998
BspLI GGNNCC 6 cut(s) 99, 100, 354, 450, 787, 892
BspMAI CTGCAG 1 cut(s) 47
BspTNI GGTCTC 2 cut(s) 245, 1075
BsrDI GCAATG 3 cut(s) 86, 246, 327
BsrI ACTGG 3 cut(s) 721, 784, 1159
BssECI CCNNGG 2 cut(s) 855, 1044
BssMI GATC 3 cut(s) 18, 726, 969
BssNI GRCGYC 1 cut(s) 218
Bst2UI CCWGG 3 cut(s) 429, 944, 1016
Bst4CI ACNGT 3 cut(s) 389, 675, 1111
BstACI GRCGYC 1 cut(s) 218
BstAPI GCANNNNNTGC 3 cut(s) 85, 329, 488
BstC8I GCNNGC 3 cut(s) 158, 480, 528
BstDEI CTNAG 5 cut(s) 119, 264, 405, 576, 696
BstF5I GGATG 3 cut(s) 32, 867, 952
BstFNI CGCG 1 cut(s) 998
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 3 cut(s) 21, 729, 972
BstMAI GTCTC 4 cut(s) 120, 245, 704, 1075
BstMBI GATC 3 cut(s) 18, 726, 969
BstMWI GCNNNNNNNGC 7 cut(s) 85, 329, 488, 572, 1055, 1058, 1061
BstNI CCWGG 3 cut(s) 429, 944, 1016
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 5 cut(s) 427, 886, 942, 1014, 1043
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 101
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 8 cut(s) 57, 319, 478, 1036, 1039, 1042, 1045, 1048
BstX2I RGATCY 2 cut(s) 726, 969
BstXI CCANNNNNNTGG 1 cut(s) 729
BstYI RGATCY 2 cut(s) 726, 969
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 3 cut(s) 32, 867, 952
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 3 cut(s) 158, 480, 528
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 5 cut(s) 97, 98, 129, 719, 890
CseI GACGC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 292, 385, 648
CviAII CATG 4 cut(s) 304, 357, 664, 1200
CviQI GTAC 3 cut(s) 292, 385, 648
DdeI CTNAG 5 cut(s) 119, 264, 405, 576, 696
DpnI GATC 3 cut(s) 20, 728, 971
DpnII GATC 3 cut(s) 18, 726, 969
DriI GACNNNNNGTC 1 cut(s) 717
Eam1105I GACNNNNNGTC 1 cut(s) 717
Eco24I GRGCYC 2 cut(s) 8, 101
Eco31I GGTCTC 2 cut(s) 245, 1075
Eco32I GATATC 1 cut(s) 1139
Eco47I GGWCC 3 cut(s) 129, 719, 890
Eco57I CTGAAG 2 cut(s) 165, 651
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 3 cut(s) 427, 942, 1014
EcoRV GATATC 1 cut(s) 1139
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 2 cut(s) 8, 101
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 4 cut(s) 307, 360, 667, 1203
FaqI GGGAC 1 cut(s) 876
FatI CATG 4 cut(s) 303, 356, 663, 1199
FauI CCCGC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 8 cut(s) 46, 333, 492, 1050, 1053, 1056, 1059, 1062
FokI GGATG 3 cut(s) 19, 854, 959
FriOI GRGCYC 2 cut(s) 8, 101
Fsp4HI GCNGC 8 cut(s) 46, 333, 492, 1050, 1053, 1056, 1059, 1062
FspBI CTAG 2 cut(s) 456, 930
GlaI GCGC 1 cut(s) 161
GluI GCNGC 8 cut(s) 46, 333, 492, 1050, 1053, 1056, 1059, 1062
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 998
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 99
HapII CCGG 2 cut(s) 888, 1044
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 4 cut(s) 307, 360, 667, 1203
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 2 cut(s) 338, 1100
HinfI GANTC 3 cut(s) 593, 807, 901
HpaII CCGG 2 cut(s) 888, 1044
HphI GGTGA 1 cut(s) 1142
Hpy166II GTNNAC 4 cut(s) 30, 292, 650, 1133
Hpy188I TCNGA 6 cut(s) 18, 58, 120, 624, 859, 1169
Hpy188III TCNNGA 2 cut(s) 517, 722
Hpy8I GTNNAC 4 cut(s) 30, 292, 650, 1133
HpyAV CCTTC 4 cut(s) 186, 543, 604, 1013
HpyCH4III ACNGT 3 cut(s) 389, 675, 1111
HpyCH4IV ACGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 7 cut(s) 85, 329, 488, 572, 1055, 1058, 1061
HpyF3I CTNAG 5 cut(s) 119, 264, 405, 576, 696
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 4 cut(s) 307, 360, 667, 1203
HspAI GCGC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 726, 969
LmnI GCTCC 5 cut(s) 73, 352, 572, 614, 914
Lsp1109I GCAGC 8 cut(s) 57, 319, 478, 1036, 1039, 1042, 1045, 1048
LweI GCATC 1 cut(s) 391
MaeI CTAG 2 cut(s) 456, 930
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 214, 259
MalI GATC 3 cut(s) 20, 728, 971
MboI GATC 3 cut(s) 18, 726, 969
MboII GAAGA 6 cut(s) 171, 266, 644, 746, 1032, 1184
MflI RGATCY 2 cut(s) 726, 969
MhlI GDGCHC 2 cut(s) 8, 101
MluCI AATT 5 cut(s) 396, 771, 934, 960, 1004
MmeI TCCRAC 2 cut(s) 156, 745
MnlI CCTC 9 cut(s) 46, 71, 199, 229, 407, 737, 761, 865, 1076
Mph1103I ATGCAT 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 790
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 2 cut(s) 945, 1112
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 2 cut(s) 888, 1044
MspR9I CCNGG 5 cut(s) 429, 888, 944, 1016, 1045
MvaI CCWGG 3 cut(s) 429, 944, 1016
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 7 cut(s) 85, 329, 488, 572, 1055, 1058, 1061
NciI CCSGG 2 cut(s) 888, 1045
NdeII GATC 3 cut(s) 18, 726, 969
NlaIII CATG 4 cut(s) 307, 360, 667, 1203
NlaIV GGNNCC 6 cut(s) 99, 100, 354, 450, 787, 892
NmuCI GTSAC 2 cut(s) 214, 259
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 1 cut(s) 667
OliI CACNNNNGTG 1 cut(s) 1112
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 3 cut(s) 593, 807, 901
PfoI TCCNGGA 1 cut(s) 1014
PkrI GCNGC 8 cut(s) 47, 334, 493, 1051, 1054, 1057, 1060, 1063
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 3 cut(s) 427, 942, 1014
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 3 cut(s) 427, 942, 1014
PspN4I GGNNCC 6 cut(s) 99, 100, 354, 450, 787, 892
PspOMI GGGCCC 1 cut(s) 97
PspPI GGNCC 5 cut(s) 97, 98, 129, 719, 890
PstI CTGCAG 1 cut(s) 47
PsuI RGATCY 2 cut(s) 726, 969
RsaI GTAC 3 cut(s) 293, 386, 649
RsaNI GTAC 3 cut(s) 292, 385, 648
RseI CAYNNNNRTG 2 cut(s) 945, 1112
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 8 cut(s) 46, 333, 492, 1050, 1053, 1056, 1059, 1062
Sau3AI GATC 3 cut(s) 18, 726, 969
Sau96I GGNCC 5 cut(s) 97, 98, 129, 719, 890
ScrFI CCNGG 5 cut(s) 429, 888, 944, 1016, 1045
SduI GDGCHC 2 cut(s) 8, 101
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 3 cut(s) 129, 719, 890
SmiMI CAYNNNNRTG 2 cut(s) 945, 1112
SmlI CTYRAG 3 cut(s) 341, 973, 1067
SmoI CTYRAG 3 cut(s) 341, 973, 1067
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 5 cut(s) 396, 771, 934, 960, 1004
SsiI CCGC 3 cut(s) 102, 228, 996
SspI AATATT 1 cut(s) 639
SspMI CTAG 2 cut(s) 456, 930
StyD4I CCNGG 5 cut(s) 427, 886, 942, 1014, 1043
TaaI ACNGT 3 cut(s) 389, 675, 1111
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 954
TasI AATT 5 cut(s) 396, 771, 934, 960, 1004
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 3 cut(s) 593, 807, 901
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 214, 259
TseI GCWGC 8 cut(s) 45, 332, 491, 1049, 1052, 1055, 1058, 1061
Tsp45I GTSAC 2 cut(s) 214, 259
TspDTI ATGAA 3 cut(s) 623, 972, 996
TspGWI ACGGA 1 cut(s) 15
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 3 cut(s) 129, 719, 890
XapI RAATTY 1 cut(s) 934
XceI RCATGY 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 790
XspI CTAG 2 cut(s) 456, 930
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.