Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Forward (+)

18228430 .. 18231407

Gene Structure 2978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44065.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCAGGTCTTGTGGCGTTATGCAGAGCTCGAGCTTCTGCTTCGTCTTCTTTATTCAACAGCGTTATTCGTCCAGCATTTCGCAATTTCTCTACAGGTTTTGCTGATACACAGAACAAATCATTGGTAGCACAAATGAAAGAAGAGATGCTCCACATGGACATCAACTCAATGATAGGAAGTTCCATGCCACTAGGTATGATGCGTATCGGAACAATCATCCACAACATCGAGATGAACCCAGGGCAAGGCGCAAAGATGGTCCGAGCTGCAGGAACCAACGCCAAGATCCTAAAGGAGCCTGCTAAAGGGAAATGCTTGATAAAGCTTCCGTCAGGGGACACCAAGTGGATCAATGCCAAATGTCGTGCTACGATTGGCACAGTGTCGAACCCGTCTCATGGAACGAAGAAGCTATATAAAGCAGGACAGAGTAGGTGGTTAGGGATAAGGCCCAAAGTTAGAGGAGTGGCGATGAATCCGTGTGATCATCCACACGGTGGAGGTGAAGGAAAAAGCAAAAGTAGTGGAAGCAGAGGAAGGACATCGGTTAGTCCGTGGGGAAAACCGTGTAAAGGCGGTTACAAATCAGCTAGTGTCAAGAAGAAGAAGAAGCGTTTGGCAGAAGCAGCAGCCAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

214

Amino Acids

22.84

Weight (kDa)

10.6

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	59 - 188	1.2e-50	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	2 cut(s)	283, 359
AdeI	CACNNNGTG	2 cut(s)	348, 500
AfiI	CCNNNNNNNGG	5 cut(s)	248, 308, 401, 500, 575
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 602, 634
AluBI	AGCT	6 cut(s)	29, 35, 269, 328, 415, 593
AluI	AGCT	6 cut(s)	29, 35, 269, 328, 415, 593
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	283, 359
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	3 cut(s)	269, 629, 632
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	262, 453
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	256, 641
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	243
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	2 cut(s)	194, 594
BfmI	CTRYAG	2 cut(s)	93, 270
BisI	GCNGC	3 cut(s)	270, 630, 633
BlsI	GCNGC	3 cut(s)	271, 631, 634
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	262, 453
BmiI	GGNNCC	2 cut(s)	277, 300
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	2 cut(s)	138, 192
BpiI	GAAGAC	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	241, 242, 557
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 308, 401, 500, 575
Bse8I	GATNNNNATC	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	241, 242, 557
BseGI	GGATG	2 cut(s)	219, 490
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	5 cut(s)	248, 308, 401, 500, 575
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	256, 641
BshFI	GGCC	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	5 cut(s)	248, 308, 401, 500, 575
BsmAI	GTCTC	1 cut(s)	402
BsmBI	CGTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	288, 351, 487
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	277, 300
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	2 cut(s)	283, 359
BssECI	CCNNGG	3 cut(s)	241, 242, 557
BssMI	GATC	3 cut(s)	288, 351, 487
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	385, 500, 570
Bst6I	CTCTTC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	557
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	219, 490
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	291, 354, 490
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	3 cut(s)	288, 351, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	2 cut(s)	93, 270
BstV1I	GCAGC	2 cut(s)	256, 641
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	557
BtgZI	GCGATG	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	219, 490
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	262, 453
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	3 cut(s)	157, 187, 401
CviJI	RGCY	9 cut(s)	29, 35, 269, 301, 328, 415, 454, 593, 635
CviKI_1	RGCY	9 cut(s)	29, 35, 269, 301, 328, 415, 454, 593, 635
DpnI	GATC	3 cut(s)	290, 353, 489
DpnII	GATC	3 cut(s)	288, 351, 487
DraIII	CACNNNGTG	2 cut(s)	348, 500
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	3 cut(s)	160, 190, 404
FaiI	YATR	7 cut(s)	22, 158, 188, 200, 402, 418, 420
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	3 cut(s)	156, 186, 400
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	270, 630, 633
FokI	GGATG	2 cut(s)	206, 477
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	270, 630, 633
FspBI	CTAG	2 cut(s)	194, 594
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	3 cut(s)	270, 630, 633
HaeIII	GGCC	1 cut(s)	454
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	160, 190, 404
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	1 cut(s)	518
Hpy188I	TCNGA	2 cut(s)	212, 266
Hpy188III	TCNNGA	2 cut(s)	232, 601
HpyAV	CCTTC	2 cut(s)	503, 534
HpyCH4III	ACNGT	3 cut(s)	385, 500, 570
HpyCH4V	TGCA	2 cut(s)	24, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
Hsp92II	CATG	3 cut(s)	160, 190, 404
HspAI	GCGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	288, 351, 487
LmnI	GCTCC	2 cut(s)	156, 298
LpnPI	CCDG	8 cut(s)	81, 87, 228, 255, 258, 315, 321, 411
Lsp1109I	GCAGC	2 cut(s)	256, 641
LweI	GCATC	2 cut(s)	138, 192
MaeI	CTAG	2 cut(s)	194, 594
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	3 cut(s)	290, 353, 489
MboI	GATC	3 cut(s)	288, 351, 487
MboII	GAAGA	6 cut(s)	39, 155, 421, 616, 619, 622
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	3 cut(s)	458, 497, 530
MslI	CAYNNNNRTG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	3 cut(s)	288, 351, 487
NlaIII	CATG	3 cut(s)	160, 190, 404
NlaIV	GGNNCC	2 cut(s)	277, 300
PaeR7I	CTCGAG	1 cut(s)	30
PasI	CCCWGGG	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	478
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	271, 631, 634
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	277, 300
PspPI	GGNCC	2 cut(s)	262, 453
PspXI	VCTCGAGB	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	31
SatI	GCNGC	3 cut(s)	270, 630, 633
Sau3AI	GATC	3 cut(s)	288, 351, 487
Sau96I	GGNCC	2 cut(s)	262, 453
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	138, 192
SfcI	CTRYAG	2 cut(s)	93, 270
Sfr274I	CTCGAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	262
SlaI	CTCGAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	2 cut(s)	194, 594
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	3 cut(s)	385, 500, 570
TaqI	TCGA	3 cut(s)	31, 231, 389
TasI	AATT	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	478
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	3 cut(s)	269, 629, 632
TspDTI	ATGAA	3 cut(s)	152, 251, 491
TspGWI	ACGGA	3 cut(s)	321, 471, 546
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	306
XhoI	CTCGAG	1 cut(s)	30
XspI	CTAG	2 cut(s)	194, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.