Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Forward (+)

9126445 .. 9130701

Gene Structure 4257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1054100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGGTGTGGAGAGCTGGAGCAGCTTCGTCTTCCCTGTTGAGTAGGCTCCTACGACACTCCAACGTCATCAACGTCACCGCCCCTACTCGCACTCTCTCCACCGATGTAGCTGGTTCAAGTAATCAGTTGTTTCACTATGATATCAATTCACAATACGGAAGGTGCATGCCTCTTGCTGATATGCACATTCAAGCCAAAATACACAGCATCGAGATGAACCCGGGCCAAGGTGGCAAGTTAGTTCGAGCACCAGGCACTTTTGCAAAGATTTTGAAAGAACCCACTGCTTCAAGGTGTTTAGTGAGACTGCCTTCAGGTGTTGAAAAATGGATTGATGCTAAGTGCCAGGCTACTATTGGTACAGTCCCAAGTGATGGAAATAAGCCCAAGAAACTCTATAAGGCTGGGCAAAACCGGTGGCGAGGCATTAGACCAACGGTTAGAGGAGTGGCAATGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGTAAGAGCAAGAGTAGTGGGTCTCATGGGAAGGGTTCTCGAACACCTTGGGGAAAGCCTACCAAGGGTGGTTACAAGACCGGTCCCAACAAGCGTAGAAAATGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

201

Amino Acids

21.64

Weight (kDa)

10.7

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	53 - 182	9e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	2 cut(s)	5, 81
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	4 cut(s)	230, 377, 482, 557
AgeI	ACCGGT	2 cut(s)	417, 572
AgsI	TTSAA	5 cut(s)	120, 194, 277, 294, 326
AjnI	CCWGG	2 cut(s)	253, 348
AluBI	AGCT	3 cut(s)	17, 26, 113
AluI	AGCT	3 cut(s)	17, 26, 113
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	301, 519
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	23
AsiGI	ACCGGT	2 cut(s)	417, 572
AspS9I	GGNCC	2 cut(s)	226, 575
AsuC2I	CCSGG	2 cut(s)	224, 225
AsuHPI	GGTGA	2 cut(s)	70, 500
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	2 cut(s)	255, 350
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	2 cut(s)	224, 225
BcoDI	GTCTC	2 cut(s)	301, 519
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	4 cut(s)	224, 225, 255, 350
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	226, 575
BmiI	GGNNCC	2 cut(s)	50, 577
BmrFI	CCNGG	4 cut(s)	224, 225, 255, 350
BmsI	GCATC	2 cut(s)	219, 328
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	224, 225
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	223, 229, 539, 555
BsaWI	WCCGGW	2 cut(s)	417, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 377, 482, 557
Bse118I	RCCGGY	2 cut(s)	417, 572
Bse1I	ACTGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	255, 350
BseDI	CCNNGG	4 cut(s)	223, 229, 539, 555
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	4 cut(s)	230, 377, 482, 557
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	228
BshTI	ACCGGT	2 cut(s)	417, 572
BsiHKAI	GWGCWC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	224, 418, 573
BslFI	GGGAC	2 cut(s)	353, 561
BslI	CCNNNNNNNGG	4 cut(s)	230, 377, 482, 557
BsmAI	GTCTC	2 cut(s)	301, 519
BsmFI	GGGAC	2 cut(s)	353, 561
BsnI	GGCC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	2 cut(s)	5, 81
BspANI	GGCC	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	50, 577
BspTNI	GGTCTC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	2 cut(s)	417, 572
BsrI	ACTGG	1 cut(s)	464
BssAI	RCCGGY	2 cut(s)	417, 572
BssECI	CCNNGG	4 cut(s)	223, 229, 539, 555
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	3 cut(s)	229, 539, 555
Bst2UI	CCWGG	2 cut(s)	255, 350
Bst4CI	ACNGT	2 cut(s)	367, 442
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	301, 519
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 234
BstNI	CCWGG	2 cut(s)	255, 350
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	4 cut(s)	222, 223, 253, 348
BstV1I	GCAGC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	170
Cfr10I	RCCGGY	2 cut(s)	417, 572
Cfr13I	GGNCC	2 cut(s)	226, 575
Cfr9I	CCCGGG	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	363
CspAI	ACCGGT	2 cut(s)	417, 572
CspCI	CAANNNNNGTGG	4 cut(s)	401, 436, 490, 525
CviAII	CATG	3 cut(s)	169, 479, 518
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eco130I	CCWWGG	3 cut(s)	229, 539, 555
Eco31I	GGTCTC	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	253, 348
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	3 cut(s)	229, 539, 555
ErhI	CCWWGG	3 cut(s)	229, 539, 555
FaeI	CATG	3 cut(s)	172, 482, 521
FaiI	YATR	6 cut(s)	141, 170, 185, 402, 480, 519
FaqI	GGGAC	2 cut(s)	353, 561
FatI	CATG	3 cut(s)	168, 478, 517
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	3 cut(s)	224, 418, 573
Hin1II	CATG	3 cut(s)	172, 482, 521
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	3 cut(s)	224, 418, 573
HphI	GGTGA	2 cut(s)	70, 500
Hpy188III	TCNNGA	2 cut(s)	214, 531
HpyAV	CCTTC	3 cut(s)	156, 324, 517
HpyCH4III	ACNGT	2 cut(s)	367, 442
HpyCH4IV	ACGT	2 cut(s)	66, 75
HpyCH4V	TGCA	3 cut(s)	168, 187, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 234
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	2 cut(s)	66, 75
Hsp92II	CATG	3 cut(s)	172, 482, 521
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	2 cut(s)	20, 54
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	2 cut(s)	219, 328
MaeII	ACGT	2 cut(s)	66, 75
MaeIII	GTNAC	2 cut(s)	76, 563
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	183, 419, 440, 479, 484, 486
MslI	CAYNNNNRTG	2 cut(s)	215, 477
MspI	CCGG	3 cut(s)	224, 418, 573
MspR9I	CCNGG	4 cut(s)	224, 225, 255, 350
MvaI	CCWGG	2 cut(s)	255, 350
MwoI	GCNNNNNNNGC	2 cut(s)	23, 234
NciI	CCSGG	2 cut(s)	224, 225
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	3 cut(s)	172, 482, 521
NlaIV	GGNNCC	2 cut(s)	50, 577
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	460
PflMI	CCANNNNNTGG	1 cut(s)	377
PinAI	ACCGGT	2 cut(s)	417, 572
PkrI	GCNGC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	253, 348
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	253, 348
PspN4I	GGNNCC	2 cut(s)	50, 577
PspPI	GGNCC	2 cut(s)	226, 575
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	2 cut(s)	215, 477
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	2 cut(s)	226, 575
ScrFI	CCNGG	4 cut(s)	224, 225, 255, 350
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	219, 328
SinI	GGWCC	1 cut(s)	575
SmaI	CCCGGG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	215, 477
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	2 cut(s)	5, 81
StyD4I	CCNGG	4 cut(s)	222, 223, 253, 348
StyI	CCWWGG	3 cut(s)	229, 539, 555
TaaI	ACNGT	2 cut(s)	367, 442
TaiI	ACGT	2 cut(s)	69, 78
TaqI	TCGA	3 cut(s)	213, 247, 532
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	460
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	233, 473
TspGWI	ACGGA	1 cut(s)	174
TspMI	CCCGGG	1 cut(s)	223
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	575
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmaI	CCCGGG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.