Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Reverse (-)

22089234 .. 22090701

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGTGTGGAGAGCTCGAGCGGCTTCATCGACCTTGTTCAACAGGCTCCTCGGCGGCCACTTCAACGCCATCAGCACCACCACTGCCTGTCGCACTCTCTCCACCGATGTGGGTGGGACAAGTAATCAGTTTTTTCACTATGATATCAATTCACAATTCGGAAGGTGCATGCCGCTTGCTGATATGCATATTCATGCCAAAATACACAGCATCGAGGTGCACCCAGGACAAGGCAGCAAGTTAGTTCGAGCACCAGGTACTTGCGCAAAGATTTTGAAAGAACCCACTTCAAGGTGTCTAGTGAGACTGCCTTCGGGTGTTGAAAAGTGGATTGATTCTAAGTGCCAGGCCACGATTGGTACGGTCCCCAGTGAAGGAAATAAGCCTAAGAAGCTCTACAAGGCTGGGCAGAGCCGGTGGTTAGGCCGCAGACCGACTGTTCGAGGAGTGGCAATGAATCCAGTAGATCATCCTCATGGTGGTGGTGAGGGTAAGAGCAAGAGTAGTGGTTCTCGTGGGAAAGGTTCTCGAACACCTTGGGGCAAGCCTACAAAGGGTGGCTACAAGACTGGTCCCAACAAGCGTAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

199

Amino Acids

21.43

Weight (kDa)

10.68

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	23
AciI	CCGC	4 cut(s)	23, 57, 176, 430
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	2 cut(s)	262, 364
AfiI	CCNNNNNNNGG	5 cut(s)	233, 294, 377, 482, 557
AgsI	TTSAA	5 cut(s)	43, 67, 280, 294, 326
AjnI	CCWGG	3 cut(s)	226, 256, 348
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	17, 397
AluI	AGCT	2 cut(s)	17, 397
Alw21I	GWGCWC	3 cut(s)	19, 225, 256
Alw26I	GTCTC	1 cut(s)	301
Alw44I	GTGCAC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	3 cut(s)	58, 351, 427
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	237
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	367, 575
AsuHPI	GGTGA	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	2 cut(s)	367, 575
BaeGI	GKGCMC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	516
Bbv12I	GWGCWC	3 cut(s)	19, 225, 256
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	3 cut(s)	228, 258, 350
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	302
BisI	GCNGC	5 cut(s)	24, 58, 176, 238, 430
BlsI	GCNGC	5 cut(s)	25, 59, 177, 239, 431
Bme1390I	CCNGG	3 cut(s)	228, 258, 350
Bme18I	GGWCC	2 cut(s)	367, 575
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	367, 575
BmiI	GGNNCC	3 cut(s)	50, 369, 577
BmrFI	CCNGG	3 cut(s)	228, 258, 350
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	366
BsaJI	CCNNGG	3 cut(s)	52, 226, 539
Bsc4I	CCNNNNNNNGG	5 cut(s)	233, 294, 377, 482, 557
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	3 cut(s)	372, 464, 577
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	3 cut(s)	228, 258, 350
BseDI	CCNNGG	3 cut(s)	52, 226, 539
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	5 cut(s)	233, 294, 377, 482, 557
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	3 cut(s)	372, 464, 577
BseRI	GAGGAG	2 cut(s)	41, 462
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	3 cut(s)	60, 353, 429
BsiHKAI	GWGCWC	3 cut(s)	19, 225, 256
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	3 cut(s)	133, 353, 561
BslI	CCNNNNNNNGG	5 cut(s)	233, 294, 377, 482, 557
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	3 cut(s)	133, 353, 561
BsnI	GGCC	3 cut(s)	60, 353, 429
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	3 cut(s)	19, 225, 256
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	4 cut(s)	23, 57, 176, 430
BspANI	GGCC	3 cut(s)	60, 353, 429
BspLI	GGNNCC	3 cut(s)	50, 369, 577
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	372, 464, 577
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	3 cut(s)	52, 226, 539
BssMI	GATC	1 cut(s)	469
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	539
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	3 cut(s)	228, 258, 350
Bst4CI	ACNGT	2 cut(s)	367, 442
BstC8I	GCNNGC	3 cut(s)	173, 180, 548
BstDEI	CTNAG	2 cut(s)	342, 390
BstF5I	GGATG	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 394
BstNI	CCWGG	3 cut(s)	228, 258, 350
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	226, 256, 348
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	60, 353, 429
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 379
Cac8I	GCNNGC	3 cut(s)	173, 180, 548
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	367, 575
CsiI	ACCWGGT	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	261, 363
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	3 cut(s)	172, 197, 479
CviQI	GTAC	2 cut(s)	261, 363
DdeI	CTNAG	2 cut(s)	342, 390
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	539
Eco24I	GRGCYC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	367, 575
Eco53kI	GAGCTC	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	3 cut(s)	226, 256, 348
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	539
EcoT22I	ATGCAT	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	3 cut(s)	175, 200, 482
FaiI	YATR	6 cut(s)	144, 173, 188, 192, 198, 480
FaqI	GGGAC	3 cut(s)	133, 353, 561
FatI	CATG	3 cut(s)	171, 196, 478
Fnu4HI	GCNGC	5 cut(s)	24, 58, 176, 238, 430
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	5 cut(s)	24, 58, 176, 238, 430
FspBI	CTAG	1 cut(s)	302
FspI	TGCGCA	1 cut(s)	268
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	5 cut(s)	24, 58, 176, 238, 430
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	60, 353, 429
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	175, 200, 482
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	338, 460
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	531
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	3 cut(s)	159, 324, 371
HpyCH4III	ACNGT	2 cut(s)	367, 442
HpyCH4V	TGCA	3 cut(s)	171, 190, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 394
HpyF3I	CTNAG	2 cut(s)	342, 390
Hsp92II	CATG	3 cut(s)	175, 200, 482
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	222
MabI	ACCWGGT	1 cut(s)	256
MaeI	CTAG	1 cut(s)	302
MalI	GATC	1 cut(s)	471
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	19, 225, 256
MluCI	AATT	2 cut(s)	151, 158
MnlI	CCTC	5 cut(s)	62, 211, 440, 484, 486
Mph1103I	ATGCAT	1 cut(s)	192
MslI	CAYNNNNRTG	5 cut(s)	110, 195, 218, 477, 483
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	3 cut(s)	228, 258, 350
MvaI	CCWGG	3 cut(s)	228, 258, 350
MwoI	GCNNNNNNNGC	2 cut(s)	23, 394
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	3 cut(s)	175, 200, 482
NlaIV	GGNNCC	3 cut(s)	50, 369, 577
NmeAIII	GCCGAG	1 cut(s)	33
NsbI	TGCGCA	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	338, 460
PkrI	GCNGC	5 cut(s)	25, 59, 177, 239, 431
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	3 cut(s)	226, 256, 348
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	3 cut(s)	226, 256, 348
PspN4I	GGNNCC	3 cut(s)	50, 369, 577
PspPI	GGNCC	2 cut(s)	367, 575
PspXI	VCTCGAGB	1 cut(s)	18
RsaI	GTAC	2 cut(s)	262, 364
RsaNI	GTAC	2 cut(s)	261, 363
RseI	CAYNNNNRTG	5 cut(s)	110, 195, 218, 477, 483
SacI	GAGCTC	1 cut(s)	19
SatI	GCNGC	5 cut(s)	24, 58, 176, 238, 430
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	2 cut(s)	367, 575
ScrFI	CCNGG	3 cut(s)	228, 258, 350
SduI	GDGCHC	3 cut(s)	19, 225, 256
SetI	ASST	9 cut(s)	19, 38, 170, 222, 262, 299, 399, 529, 541
SexAI	ACCWGGT	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	18
SinI	GGWCC	2 cut(s)	367, 575
SlaI	CTCGAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	5 cut(s)	110, 195, 218, 477, 483
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	151, 158
SsiI	CCGC	4 cut(s)	23, 57, 176, 430
SspMI	CTAG	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	226, 256, 348
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	2 cut(s)	367, 442
TaqI	TCGA	6 cut(s)	19, 32, 216, 250, 445, 532
TaqII	GACCGA	1 cut(s)	451
TasI	AATT	2 cut(s)	151, 158
TauI	GCSGC	4 cut(s)	26, 60, 178, 432
TfiI	GAWTC	2 cut(s)	338, 460
TscAI	CASTG	2 cut(s)	91, 379
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	3 cut(s)	18, 185, 473
TspRI	CASTG	2 cut(s)	91, 379
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	367, 575
XceI	RCATGY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XhoI	CTCGAG	1 cut(s)	18
XspI	CTAG	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.