Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Forward (+)

223853 .. 225641

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1002800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGGTGTGGAGAGCTGGAGCTGCTTCGTCTTCCCTGTTGAATAGGCTCCTACGCCACTCCAACGTCATCAACGTCCCCACCCGCGCCTCCACTCGCACTCTCTCCACCGATGTAGCTGGTTCAAGTAATCAGTTGTTTCACTATGATATCAATTCACAATACGGAAGGTGCATGCCGCTTGCTGATATGCACATTCAAGCAAAAATACACAGCATCGAGATGAACCCGGGCCAAGGTGGCAAGTTAGTTCGAGCACCAGGCACTTTTGCAAAGATTTTGAAAGAACCCACTGTTTCAAGGTGTTTAGTGAGACTGCCTTCAGGTGTTGAAAAGTGGATTGATTCTAAATGCCGGGCTACAATTGGTACAGTCCCAAGTGATGGAAATAAGCCCAAGAAATTATATAAGGCTGGGCAAAACCGGTGGCGAGGCATCAGACCAACTGTTCGAGGAGTGGCAATGAATCCAGTTGATCATCCTCATGGTGGAGGTGAGGGTAAGAGCAAGAGTAGTGGGTCTCATGGGAAGGGTTCTCGAACACCTTGGGGAAAGCCTACCAAGGGTGGTTACAAGACCGGTCCCAACAAGCGTAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

201

Amino Acids

21.67

Weight (kDa)

10.93

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	55 - 184	3e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	5, 85, 179
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	4 cut(s)	236, 383, 488, 563
AgeI	ACCGGT	2 cut(s)	423, 578
AgsI	TTSAA	6 cut(s)	43, 126, 200, 283, 300, 332
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	17, 23, 119
AluI	AGCT	3 cut(s)	17, 23, 119
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	2 cut(s)	307, 525
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AsiGI	ACCGGT	2 cut(s)	423, 578
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	232, 581
AsuC2I	CCSGG	3 cut(s)	230, 231, 356
AsuHPI	GGTGA	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	3 cut(s)	230, 231, 356
BcoDI	GTCTC	2 cut(s)	307, 525
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	24, 179
BlsI	GCNGC	2 cut(s)	25, 180
Bme1390I	CCNGG	4 cut(s)	230, 231, 261, 356
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	232, 581
BmiI	GGNNCC	2 cut(s)	50, 583
BmrFI	CCNGG	4 cut(s)	230, 231, 261, 356
BmsI	GCATC	2 cut(s)	225, 444
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	3 cut(s)	230, 231, 356
BsaI	GGTCTC	1 cut(s)	525
BsaJI	CCNNGG	4 cut(s)	229, 235, 545, 561
BsaWI	WCCGGW	2 cut(s)	423, 578
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 383, 488, 563
Bse118I	RCCGGY	2 cut(s)	423, 578
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	229, 235, 545, 561
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	4 cut(s)	236, 383, 488, 563
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	234
BshTI	ACCGGT	2 cut(s)	423, 578
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	230, 355, 424, 579
BslFI	GGGAC	3 cut(s)	62, 359, 567
BslI	CCNNNNNNNGG	4 cut(s)	236, 383, 488, 563
BsmAI	GTCTC	2 cut(s)	307, 525
BsmFI	GGGAC	3 cut(s)	62, 359, 567
BsnI	GGCC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	525
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	3 cut(s)	5, 85, 179
BspANI	GGCC	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	50, 583
BspTNI	GGTCTC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	2 cut(s)	423, 578
BsrI	ACTGG	1 cut(s)	470
BssAI	RCCGGY	2 cut(s)	423, 578
BssECI	CCNNGG	4 cut(s)	229, 235, 545, 561
BssMI	GATC	1 cut(s)	475
BssT1I	CCWWGG	3 cut(s)	235, 545, 561
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	295, 373, 448
BstC8I	GCNNGC	2 cut(s)	176, 183
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	2 cut(s)	307, 525
BstMBI	GATC	1 cut(s)	475
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 240
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	4 cut(s)	228, 229, 259, 354
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	176, 183
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	2 cut(s)	423, 578
Cfr13I	GGNCC	2 cut(s)	232, 581
Cfr9I	CCCGGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	369
CspAI	ACCGGT	2 cut(s)	423, 578
CspCI	CAANNNNNGTGG	4 cut(s)	407, 442, 496, 531
CviAII	CATG	3 cut(s)	175, 485, 524
CviJI	RGCY	9 cut(s)	17, 23, 49, 119, 234, 359, 394, 413, 556
CviKI_1	RGCY	9 cut(s)	17, 23, 49, 119, 234, 359, 394, 413, 556
CviQI	GTAC	1 cut(s)	369
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
Eco130I	CCWWGG	3 cut(s)	235, 545, 561
Eco31I	GGTCTC	1 cut(s)	525
Eco32I	GATATC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	3 cut(s)	235, 545, 561
ErhI	CCWWGG	3 cut(s)	235, 545, 561
FaeI	CATG	3 cut(s)	178, 488, 527
FaiI	YATR	7 cut(s)	147, 176, 191, 406, 408, 486, 525
FaqI	GGGAC	3 cut(s)	62, 359, 567
FatI	CATG	3 cut(s)	174, 484, 523
FauI	CCCGC	1 cut(s)	92
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	24, 179
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	24, 179
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	2 cut(s)	24, 179
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	4 cut(s)	230, 355, 424, 579
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	178, 488, 527
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	344, 466
HpaII	CCGG	4 cut(s)	230, 355, 424, 579
HphI	GGTGA	1 cut(s)	506
Hpy188I	TCNGA	1 cut(s)	440
Hpy188III	TCNNGA	2 cut(s)	220, 537
HpyAV	CCTTC	3 cut(s)	162, 330, 523
HpyCH4III	ACNGT	3 cut(s)	295, 373, 448
HpyCH4IV	ACGT	2 cut(s)	66, 75
HpyCH4V	TGCA	3 cut(s)	174, 193, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 240
HpySE526I	ACGT	2 cut(s)	66, 75
Hsp92II	CATG	3 cut(s)	178, 488, 527
HspAI	GCGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	2 cut(s)	20, 54
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	2 cut(s)	225, 444
MaeII	ACGT	2 cut(s)	66, 75
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	1 cut(s)	24
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	3 cut(s)	154, 363, 401
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	100, 425, 446, 485, 490, 492
MslI	CAYNNNNRTG	2 cut(s)	221, 483
MspI	CCGG	4 cut(s)	230, 355, 424, 579
MspR9I	CCNGG	4 cut(s)	230, 231, 261, 356
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	23, 240
NciI	CCSGG	3 cut(s)	230, 231, 356
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	3 cut(s)	178, 488, 527
NlaIV	GGNNCC	2 cut(s)	50, 583
NspI	RCATGY	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	344, 466
PflMI	CCANNNNNTGG	1 cut(s)	383
PinAI	ACCGGT	2 cut(s)	423, 578
PkrI	GCNGC	2 cut(s)	25, 180
Psp6I	CCWGG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	50, 583
PspPI	GGNCC	2 cut(s)	232, 581
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	221, 483
SatI	GCNGC	2 cut(s)	24, 179
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	2 cut(s)	232, 581
ScrFI	CCNGG	4 cut(s)	230, 231, 261, 356
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	2 cut(s)	225, 444
SinI	GGWCC	1 cut(s)	581
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	221, 483
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	3 cut(s)	154, 363, 401
SsiI	CCGC	3 cut(s)	5, 85, 179
StyD4I	CCNGG	4 cut(s)	228, 229, 259, 354
StyI	CCWWGG	3 cut(s)	235, 545, 561
TaaI	ACNGT	3 cut(s)	295, 373, 448
TaiI	ACGT	2 cut(s)	69, 78
TaqI	TCGA	4 cut(s)	219, 253, 451, 538
TasI	AATT	3 cut(s)	154, 363, 401
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	2 cut(s)	344, 466
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	239, 479
TspGWI	ACGGA	1 cut(s)	180
TspMI	CCCGGG	1 cut(s)	229
TspRI	CASTG	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	581
XceI	RCATGY	1 cut(s)	178
XmaI	CCCGGG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.