Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Reverse (-)

58668666 .. 58670389

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTTTGTGGAGAGCTCGTGCGGTTTCGTCGGCGCTGTTCAATAGGCTCCTCAGCCGCTCCGGCGCCACCGACACCGCCGCCGCCGCCCACCGCAGTTTCTCCACAGGGGGTACAAGTAGTCAGTTTTTTACCTACGACATTAATTCACAATACGGAAGTTGCATGCCACTTTCTGCTATGCACATTCAAGCCAAAATACACAACATTGAGTTAAACCCTGGTCAAGGTGGCAAGTTAGTTCGGGCTCCGGGAACTTGTGCAAAGATTTTGAAAGAACCCACGTCGAAAGGTTGTCTTGTGAGACTGCCTTCAGGTGTTGAAAAGTGGATTGATTCCAAGTGCCGGGCCGTTATCGGTGAGGTCCCAAGTCAAGGCAAAAAGCCTAAGAAGCTCTATAAAGCTGGGCAAAGCCGGTGGTTAGGCATCAGACCAACAGTTCGAGGAGTGGCAATGAATCCATGTGATCATCCTCATGGTGGAGGGGAGGGCAAGAGCAAGAGTAGTGGTTCTCATGGGAAATGTTCACGAACACCTTGGGGCAAGCCTTGTAAGGGTGGCTATAAGACTGGACCCAACAAGCGTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

197

Amino Acids

21.08

Weight (kDa)

10.33

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	52 - 180	1.8e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	60
AciI	CCGC	7 cut(s)	23, 58, 78, 81, 84, 87, 94
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	5 cut(s)	227, 345, 374, 479, 554
AgsI	TTSAA	4 cut(s)	43, 191, 274, 323
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	3 cut(s)	17, 394, 404
AluI	AGCT	3 cut(s)	17, 394, 404
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	348
ArsI	GACNNNNNNTTYG	2 cut(s)	423, 455
AseI	ATTAAT	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	37, 68
AspS9I	GGNCC	3 cut(s)	348, 364, 572
AsuC2I	CCSGG	2 cut(s)	252, 347
AsuHPI	GGTGA	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	364, 572
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	19, 250
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	2 cut(s)	252, 347
BcoDI	GTCTC	1 cut(s)	298
BfoI	RGCGCY	2 cut(s)	38, 69
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	4 cut(s)	58, 81, 84, 87
BlsI	GCNGC	4 cut(s)	59, 82, 85, 88
Bme1390I	CCNGG	3 cut(s)	222, 252, 347
Bme18I	GGWCC	2 cut(s)	364, 572
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	348, 364, 572
BmiI	GGNNCC	5 cut(s)	50, 67, 249, 366, 574
BmrFI	CCNGG	3 cut(s)	222, 252, 347
BmsI	GCATC	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	252, 347
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	220, 536
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 345, 374, 479, 554
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	220, 536
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	5 cut(s)	227, 345, 374, 479, 554
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	2 cut(s)	41, 459
BseYI	CCCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	4 cut(s)	63, 251, 346, 415
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	5 cut(s)	227, 345, 374, 479, 554
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	19, 250
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	7 cut(s)	23, 58, 78, 81, 84, 87, 94
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	5 cut(s)	50, 67, 249, 366, 574
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	220, 536
BssMI	GATC	1 cut(s)	466
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	167, 545
BstDEI	CTNAG	2 cut(s)	53, 387
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	469
BstH2I	RGCGCY	2 cut(s)	38, 69
BstHHI	GCGC	2 cut(s)	37, 68
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 86, 391
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	220, 250, 345
BsuRI	GGCC	1 cut(s)	350
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	2 cut(s)	167, 545
CfoI	GCGC	2 cut(s)	37, 68
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	348, 364, 572
Csp6I	GTAC	1 cut(s)	114
CspCI	CAANNNNNGTGG	4 cut(s)	398, 433, 487, 522
CviAII	CATG	4 cut(s)	166, 462, 476, 515
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	2 cut(s)	53, 387
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	536
Eco24I	GRGCYC	2 cut(s)	19, 250
Eco47I	GGWCC	2 cut(s)	364, 572
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	2 cut(s)	19, 250
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	4 cut(s)	169, 465, 479, 518
FaiI	YATR	7 cut(s)	167, 182, 399, 463, 477, 516, 564
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	4 cut(s)	165, 461, 475, 514
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	58, 81, 84, 87
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	2 cut(s)	19, 250
Fsp4HI	GCNGC	4 cut(s)	58, 81, 84, 87
GlaI	GCGC	2 cut(s)	36, 67
GluI	GCNGC	4 cut(s)	58, 81, 84, 87
GsaI	CCCAGC	1 cut(s)	408
HaeII	RGCGCY	2 cut(s)	38, 69
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	4 cut(s)	63, 251, 346, 415
HhaI	GCGC	2 cut(s)	37, 68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	169, 465, 479, 518
Hin6I	GCGC	2 cut(s)	35, 66
HinP1I	GCGC	2 cut(s)	35, 66
HinfI	GANTC	2 cut(s)	335, 457
HpaII	CCGG	4 cut(s)	63, 251, 346, 415
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	1 cut(s)	431
Hpy188III	TCNNGA	1 cut(s)	528
Hpy8I	GTNNAC	1 cut(s)	527
Hpy99I	CGWCG	2 cut(s)	34, 289
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	165, 184, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 86, 391
HpyF3I	CTNAG	2 cut(s)	53, 387
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	169, 465, 479, 518
HspAI	GCGC	2 cut(s)	35, 66
KasI	GGCGCC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	3 cut(s)	54, 65, 253
LweI	GCATC	1 cut(s)	435
MaeII	ACGT	1 cut(s)	284
MalI	GATC	1 cut(s)	468
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	466
MhlI	GDGCHC	2 cut(s)	19, 250
MluCI	AATT	1 cut(s)	145
Mly113I	GGCGCC	1 cut(s)	66
MnlI	CCTC	6 cut(s)	62, 355, 437, 476, 481, 483
MseI	TTAA	2 cut(s)	144, 215
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	4 cut(s)	63, 251, 346, 415
MspR9I	CCNGG	3 cut(s)	222, 252, 347
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	63, 86, 391
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	252, 347
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	4 cut(s)	169, 465, 479, 518
NlaIV	GGNNCC	5 cut(s)	50, 67, 249, 366, 574
NspI	RCATGY	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	335, 457
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	59, 82, 85, 88
PluTI	GGCGCC	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	5 cut(s)	50, 67, 249, 366, 574
PspPI	GGNCC	3 cut(s)	348, 364, 572
PspPPI	RGGWCCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	144, 215
SatI	GCNGC	4 cut(s)	58, 81, 84, 87
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	3 cut(s)	348, 364, 572
ScrFI	CCNGG	3 cut(s)	222, 252, 347
SduI	GDGCHC	2 cut(s)	19, 250
SfaNI	GCATC	1 cut(s)	435
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	2 cut(s)	364, 572
SmiMI	CAYNNNNRTG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	7 cut(s)	23, 58, 78, 81, 84, 87, 94
SspDI	GGCGCC	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	220, 250, 345
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	287, 442
TasI	AATT	1 cut(s)	145
TauI	GCSGC	4 cut(s)	60, 83, 86, 89
TfiI	GAWTC	2 cut(s)	335, 457
Tru1I	TTAA	2 cut(s)	144, 215
Tru9I	TTAA	2 cut(s)	144, 215
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	364, 572
VspI	ATTAAT	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	225
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.