Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Forward (+)

16138102 .. 16139703

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTTGGTGGAGAGCTCGTGCTGTTTCGTCGGCGATCTTGAGTAGGCTCCTCAGCCGCTCGGGCGCCACCGACGTCGCCGCCGTTTCCCGCCGCAGTTTCTCCACAGGTAGACATCTCGGTAATCAGTTTTTTACTTATGACATCAATTCACAATACGGAAGTTGCATGCCGCTTTCTGCTATGCACATTCAAGCCAAAATACACAACATTGAGTTAAACCCTGGTCAGGGTGGCAAGTTAGTTCGGGCTCCAGGAACTTGTGCAAAGATTCTGAAAGAACCCACAGAGAAAGGATGTCTTGTGAGACTGCCTTCAGGTGTTGAAAAGTGGATTGATTCCAAGTGTCGGGCCGTTATTGGTGAGGTCCCAAGTAAAGGAAAAAAGCCTAAGAAGCTTTATAAAGCTGGGCAAAGCCGGTGGTTAGGCATCAGACCAACAGTTAGAGGAGTGGCAATGAATCCATGTGATCATCCTCATGGCGGAGGGGAGGGCAAGAGCAAGAGCAGTGGATCTCATGGGAAATGTTCCCGAACACCTTGGGGCAAGCCTTGTAAGGGTGGGTACAAGACTGGACCCAACAAGCGTAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

199

Amino Acids

21.44

Weight (kDa)

10.42

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	53 - 181	1.3e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	6 cut(s)	58, 81, 91, 94, 173, 483
AclWI	GGATC	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	300
AcyI	GRCGYC	2 cut(s)	66, 75
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	6 cut(s)	229, 230, 348, 377, 482, 557
AgsI	TTSAA	2 cut(s)	194, 326
AjnI	CCWGG	2 cut(s)	223, 253
AluBI	AGCT	3 cut(s)	17, 397, 407
AluI	AGCT	3 cut(s)	17, 397, 407
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	3 cut(s)	351, 367, 575
AsuHPI	GGTGA	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	367, 575
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	19, 253
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	68, 338
BciT130I	CCWGG	2 cut(s)	225, 255
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	4 cut(s)	58, 81, 94, 173
BlsI	GCNGC	4 cut(s)	59, 82, 95, 174
Bme1390I	CCNGG	2 cut(s)	225, 255
Bme18I	GGWCC	2 cut(s)	367, 575
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	351, 367, 575
BmiI	GGNNCC	5 cut(s)	50, 67, 252, 369, 577
BmrFI	CCNGG	2 cut(s)	225, 255
BmsI	GCATC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	61
BsaHI	GRCGYC	2 cut(s)	66, 75
BsaJI	CCNNGG	2 cut(s)	223, 539
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	6 cut(s)	229, 230, 348, 377, 482, 557
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	225, 255
BseDI	CCNNGG	2 cut(s)	223, 539
BseGI	GGATG	2 cut(s)	302, 472
BseLI	CCNNNNNNNGG	6 cut(s)	229, 230, 348, 377, 482, 557
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	2 cut(s)	41, 462
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	6 cut(s)	229, 230, 348, 377, 482, 557
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	19, 253
Bsp143I	GATC	3 cut(s)	36, 469, 512
BspACI	CCGC	6 cut(s)	58, 81, 91, 94, 173, 483
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	5 cut(s)	50, 67, 252, 369, 577
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	223, 539
BssMI	GATC	3 cut(s)	36, 469, 512
BssNI	GRCGYC	2 cut(s)	66, 75
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	539
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	225, 255
Bst4CI	ACNGT	1 cut(s)	442
BstACI	GRCGYC	2 cut(s)	66, 75
BstC8I	GCNNGC	2 cut(s)	170, 548
BstDEI	CTNAG	2 cut(s)	53, 390
BstF5I	GGATG	2 cut(s)	302, 472
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	39, 472, 515
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	3 cut(s)	36, 469, 512
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 394
BstNI	CCWGG	2 cut(s)	225, 255
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	223, 253
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	302, 472
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	170, 548
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	3 cut(s)	351, 367, 575
Csp6I	GTAC	1 cut(s)	565
CspCI	CAANNNNNGTGG	4 cut(s)	401, 436, 490, 525
CviAII	CATG	4 cut(s)	169, 465, 479, 518
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	2 cut(s)	53, 390
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	3 cut(s)	38, 471, 514
DpnII	GATC	3 cut(s)	36, 469, 512
EciI	GGCGGA	1 cut(s)	498
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	539
Eco24I	GRGCYC	2 cut(s)	19, 253
Eco47I	GGWCC	2 cut(s)	367, 575
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	223, 253
EcoT14I	CCWWGG	1 cut(s)	539
EcoT38I	GRGCYC	2 cut(s)	19, 253
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	4 cut(s)	172, 468, 482, 521
FaiI	YATR	7 cut(s)	141, 170, 185, 402, 466, 480, 519
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	4 cut(s)	168, 464, 478, 517
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	58, 81, 94, 173
FokI	GGATG	2 cut(s)	309, 459
FriOI	GRGCYC	2 cut(s)	19, 253
Fsp4HI	GCNGC	4 cut(s)	58, 81, 94, 173
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	58, 81, 94, 173
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	2 cut(s)	66, 75
Hin1II	CATG	4 cut(s)	172, 468, 482, 521
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	3 cut(s)	271, 338, 460
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	276, 434
Hpy188III	TCNNGA	2 cut(s)	40, 531
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	3 cut(s)	34, 77, 80
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	168, 187, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 394
HpyF3I	CTNAG	2 cut(s)	53, 390
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	2 cut(s)	66, 75
Hsp92II	CATG	4 cut(s)	172, 468, 482, 521
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	36, 469, 512
LmnI	GCTCC	2 cut(s)	54, 256
LweI	GCATC	1 cut(s)	438
MaeII	ACGT	1 cut(s)	75
MalI	GATC	3 cut(s)	38, 471, 514
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	3 cut(s)	36, 469, 512
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	19, 253
MluCI	AATT	1 cut(s)	148
Mly113I	GGCGCC	1 cut(s)	66
MnlI	CCTC	6 cut(s)	62, 358, 440, 479, 484, 486
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	2 cut(s)	225, 255
MvaI	CCWGG	2 cut(s)	225, 255
MwoI	GCNNNNNNNGC	2 cut(s)	63, 394
NarI	GGCGCC	1 cut(s)	66
NdeII	GATC	3 cut(s)	36, 469, 512
NlaIII	CATG	4 cut(s)	172, 468, 482, 521
NlaIV	GGNNCC	5 cut(s)	50, 67, 252, 369, 577
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	271, 338, 460
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	59, 82, 95, 174
PluTI	GGCGCC	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	223, 253
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	223, 253
PspN4I	GGNNCC	5 cut(s)	50, 67, 252, 369, 577
PspPI	GGNCC	3 cut(s)	351, 367, 575
PspPPI	RGGWCCY	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	512
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	4 cut(s)	58, 81, 94, 173
Sau3AI	GATC	3 cut(s)	36, 469, 512
Sau96I	GGNCC	3 cut(s)	351, 367, 575
ScrFI	CCNGG	2 cut(s)	225, 255
SduI	GDGCHC	2 cut(s)	19, 253
SetI	ASST	8 cut(s)	19, 78, 112, 322, 369, 399, 409, 541
SfaNI	GCATC	1 cut(s)	438
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	2 cut(s)	367, 575
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	6 cut(s)	58, 81, 91, 94, 173, 483
SspDI	GGCGCC	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	223, 253
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	78
TasI	AATT	1 cut(s)	148
TauI	GCSGC	4 cut(s)	60, 83, 96, 175
TfiI	GAWTC	3 cut(s)	271, 338, 460
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	514
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	367, 575
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	112
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.