Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Reverse (-)

11605764 .. 11607508

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G126000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCTCTGTGGAGAGCTCGAGCGGTTTCTTCGACCTTGTTCAATAGGCTCCTCGGCGGCCACTTCAGCGCCATCATTAGCACCACCACTGCCTGTCGCACTCTCTCCACAGATGTAGGTGGGGCAAGTAATCAGTTGTTTCACTATGATGTCAATTCACAATTTGGAAGGTGCATGCCGCTTGCCGATATGCACATTCAAGCCAAAATACACAGCATTGAGATGCACCCAGGTCAAGGTGGCAAGTTAGTTCGAGCACCAGGCACTTATGCAAAGATTTTGAAAGAACCCACTTCAAGGTGTCTAGTGAGACTGCCTTCGGGTGTTGAAAAGTGGATTGATTCTAAGTGCCGAGCCACGATTGGTACGGTCCCCAGTGAAGGAAATAAGCCGAAGAAGCTCTACAAGGCTGGGCAAAACCGGTGGTTAGGCCGCAGACCGACAGTTCGAGGAGTGGCAATGAATCCAGTAGATCATCCTCATGGTGGAGGCGAGGGTAAGAGCAAGAGTAGTGGTTCTCATGGAAAGGGTTCTCGAACACCTTGGGGCAAGCCTACAAAGGGTGGATATAAGACTGGTCCCAACAAGCGTAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

200

Amino Acids

21.57

Weight (kDa)

10.7

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	23
AciI	CCGC	4 cut(s)	23, 57, 179, 433
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	5 cut(s)	236, 297, 380, 485, 560
AgeI	ACCGGT	1 cut(s)	420
AgsI	TTSAA	5 cut(s)	43, 200, 283, 297, 329
AjnI	CCWGG	2 cut(s)	229, 259
AluBI	AGCT	2 cut(s)	17, 400
AluI	AGCT	2 cut(s)	17, 400
Alw21I	GWGCWC	2 cut(s)	19, 259
Alw26I	GTCTC	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	2 cut(s)	58, 430
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
AsiGI	ACCGGT	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	370, 578
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	2 cut(s)	370, 578
BanII	GRGCYC	1 cut(s)	19
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
Bbv12I	GWGCWC	2 cut(s)	19, 259
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	2 cut(s)	231, 261
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	3 cut(s)	58, 179, 433
BlsI	GCNGC	3 cut(s)	59, 180, 434
Bme1390I	CCNGG	2 cut(s)	231, 261
Bme18I	GGWCC	2 cut(s)	370, 578
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	370, 578
BmiI	GGNNCC	3 cut(s)	50, 372, 580
BmrFI	CCNGG	2 cut(s)	231, 261
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	52, 229, 542
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	5 cut(s)	236, 297, 380, 485, 560
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	3 cut(s)	375, 467, 580
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	231, 261
BseDI	CCNNGG	3 cut(s)	52, 229, 542
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	5 cut(s)	236, 297, 380, 485, 560
BseMI	GCAATG	1 cut(s)	465
BseNI	ACTGG	3 cut(s)	375, 467, 580
BseRI	GAGGAG	2 cut(s)	41, 465
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	2 cut(s)	60, 432
BshTI	ACCGGT	1 cut(s)	420
BsiHKAI	GWGCWC	2 cut(s)	19, 259
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	356, 564
BslI	CCNNNNNNNGG	5 cut(s)	236, 297, 380, 485, 560
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	356, 564
BsnI	GGCC	2 cut(s)	60, 432
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	19, 259
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	4 cut(s)	23, 57, 179, 433
BspANI	GGCC	2 cut(s)	60, 432
BspLI	GGNNCC	3 cut(s)	50, 372, 580
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	3 cut(s)	375, 467, 580
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	52, 229, 542
BssMI	GATC	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	2 cut(s)	231, 261
Bst4CI	ACNGT	2 cut(s)	370, 445
BstC8I	GCNNGC	3 cut(s)	176, 183, 551
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	475
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 397
BstNI	CCWGG	2 cut(s)	231, 261
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	229, 259
BsuRI	GGCC	2 cut(s)	60, 432
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 382
Cac8I	GCNNGC	3 cut(s)	176, 183, 551
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	2 cut(s)	370, 578
Csp6I	GTAC	1 cut(s)	366
CspAI	ACCGGT	1 cut(s)	420
CspCI	CAANNNNNGTGG	4 cut(s)	404, 439, 493, 528
CviAII	CATG	3 cut(s)	175, 482, 521
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	370, 578
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	229, 259
EcoT14I	CCWWGG	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	3 cut(s)	178, 485, 524
FaiI	YATR	7 cut(s)	147, 176, 191, 270, 483, 522, 570
FaqI	GGGAC	2 cut(s)	356, 564
FatI	CATG	3 cut(s)	174, 481, 520
Fnu4HI	GCNGC	3 cut(s)	58, 179, 433
FokI	GGATG	1 cut(s)	462
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	3 cut(s)	58, 179, 433
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	3 cut(s)	58, 179, 433
GsaI	CCCAGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	60, 432
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	178, 485, 524
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	341, 463
HpaII	CCGG	1 cut(s)	421
Hpy188III	TCNNGA	1 cut(s)	534
HpyAV	CCTTC	3 cut(s)	162, 327, 374
HpyCH4III	ACNGT	2 cut(s)	370, 445
HpyCH4V	TGCA	4 cut(s)	174, 193, 226, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 397
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	3 cut(s)	178, 485, 524
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	54
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	305
MalI	GATC	1 cut(s)	474
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	1 cut(s)	472
MboII	GAAGA	2 cut(s)	21, 406
MhlI	GDGCHC	2 cut(s)	19, 259
MluCI	AATT	2 cut(s)	154, 161
MnlI	CCTC	5 cut(s)	62, 443, 482, 487, 489
MroXI	GAANNNNTTC	1 cut(s)	529
MslI	CAYNNNNRTG	3 cut(s)	147, 221, 480
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	231, 261
MvaI	CCWGG	2 cut(s)	231, 261
MwoI	GCNNNNNNNGC	2 cut(s)	66, 397
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	3 cut(s)	178, 485, 524
NlaIV	GGNNCC	3 cut(s)	50, 372, 580
NmeAIII	GCCGAG	2 cut(s)	33, 377
NspI	RCATGY	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	341, 463
PinAI	ACCGGT	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	59, 180, 434
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	229, 259
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	229, 259
PspN4I	GGNNCC	3 cut(s)	50, 372, 580
PspPI	GGNCC	2 cut(s)	370, 578
PspXI	VCTCGAGB	1 cut(s)	18
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	3 cut(s)	147, 221, 480
SacI	GAGCTC	1 cut(s)	19
SatI	GCNGC	3 cut(s)	58, 179, 433
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	2 cut(s)	370, 578
ScrFI	CCNGG	2 cut(s)	231, 261
SduI	GDGCHC	2 cut(s)	19, 259
SetI	ASST	9 cut(s)	19, 38, 121, 173, 235, 241, 302, 402, 544
SfaNI	GCATC	1 cut(s)	213
Sfr274I	CTCGAG	1 cut(s)	18
SinI	GGWCC	2 cut(s)	370, 578
SlaI	CTCGAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	3 cut(s)	147, 221, 480
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	2 cut(s)	154, 161
SsiI	CCGC	4 cut(s)	23, 57, 179, 433
SspMI	CTAG	1 cut(s)	305
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	229, 259
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	370, 445
TaqI	TCGA	5 cut(s)	19, 32, 253, 448, 535
TaqII	GACCGA	1 cut(s)	454
TasI	AATT	2 cut(s)	154, 161
TauI	GCSGC	3 cut(s)	60, 181, 435
TfiI	GAWTC	2 cut(s)	341, 463
TscAI	CASTG	2 cut(s)	94, 382
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	2 cut(s)	94, 382
VpaK11BI	GGWCC	2 cut(s)	370, 578
XceI	RCATGY	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.