Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Forward (+)

34804774 .. 34807558

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTTTGTGGAGAGCTCGTGCGGTTTCGTCGGCGCTGTTCAATAGGCTCCTCAGCCGCTCCGGCGCCACCGACACCGCCGCCGCCGCCCACCGCGGTTTCTCCACAGGGGGTACAAGTAGTCAGTTTTTTACTTATGACATTAATTCACAGTACGGAAGTTGCATGCCGCTTTCTGCTATGCACATTCAAGCCAAAATACACAACATTGAGTTAAACCCTGGTCAAGGTGGCAAGTTAGTTCGGGCTCCGGGAACTTGTGCAAAGATTTTGAAAGAACCCACGTCGAAAGGTTGTCTTGTGAGACTGCCTTCAGGTGTTGAAAAGTGGATTGATTCCAAGTGCCGGGCCGTTATCGGTGAGGTCCCAAGTCAAGGCAAAAAGCCTAAGAAGCTCTATAAAGCTGGGCAAAGCCGGTGGTTAGGCATCAGACCAACAGTGCGAGGAGTGGCAATGAATCCATGTGATCATCCCCATGGTGGAGGGGAGGGCAAGAGCAAGAGTAGCGGTTCTCATGGAAAATGTTCTCGAACACCTTGGGGCAAGCCTTGTAAGGGTGGATACAAGACTGGACCCAACAAGCAGCATACATGGATTGAAGCTGGTGGTATATTCGAGACTCTGGTGTATGGATTGAAGGCTTTGCACCCCGGGCCATATTCTAGTAGCCGGAAGTGCTTGATTCGAAAGCCTGGGACTCCTACTTGGTTTAAAATAATAAAATTGGCAGTGAAACTCAAAATTGAGCGCTTAGATACTGGATGTGACTCTGAAGTCCTTGTTCATCTGATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

265

Amino Acids

28.64

Weight (kDa)

10.03

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	52 - 180	4e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	773
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	297, 792
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	115, 155
AfeI	AGCGCT	1 cut(s)	749
AfiI	CCNNNNNNNGG	5 cut(s)	227, 345, 374, 479, 554
AgsI	TTSAA	6 cut(s)	43, 191, 274, 323, 599, 637
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	2 cut(s)	220, 691
AluBI	AGCT	4 cut(s)	17, 394, 404, 602
AluI	AGCT	4 cut(s)	17, 394, 404, 602
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	298, 611
Ama87I	CYCGRG	1 cut(s)	650
Aor51HI	AGCGCT	1 cut(s)	749
AoxI	GGCC	2 cut(s)	348, 653
ApeKI	GCWGC	1 cut(s)	583
AseI	ATTAAT	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	523
AspLEI	GCGC	3 cut(s)	37, 68, 750
AspS9I	GGNCC	4 cut(s)	348, 364, 572, 653
AsuC2I	CCSGG	4 cut(s)	252, 347, 651, 652
AsuHPI	GGTGA	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	650
AvaII	GGWCC	2 cut(s)	364, 572
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	19, 250
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	595
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	2 cut(s)	222, 693
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	4 cut(s)	252, 347, 651, 652
BcoDI	GTCTC	2 cut(s)	298, 611
BfaI	CTAG	1 cut(s)	663
BfoI	RGCGCY	3 cut(s)	38, 69, 751
BfuI	GTATCC	1 cut(s)	554
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	6 cut(s)	58, 81, 84, 87, 170, 584
BlsI	GCNGC	6 cut(s)	59, 82, 85, 88, 171, 585
Bme1390I	CCNGG	6 cut(s)	222, 252, 347, 651, 652, 693
Bme18I	GGWCC	2 cut(s)	364, 572
BmeT110I	CYCGRG	1 cut(s)	650
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	348, 364, 572, 653
BmiI	GGNNCC	5 cut(s)	50, 67, 249, 366, 574
BmrFI	CCNGG	6 cut(s)	222, 252, 347, 651, 652, 693
BmsI	GCATC	2 cut(s)	435, 780
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	685
BpuMI	CCSGG	4 cut(s)	252, 347, 651, 652
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	7 cut(s)	94, 220, 475, 536, 649, 650, 692
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 345, 374, 479, 554
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	2 cut(s)	574, 763
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	222, 693
BseDI	CCNNGG	7 cut(s)	94, 220, 475, 536, 649, 650, 692
BseGI	GGATG	2 cut(s)	469, 767
BseLI	CCNNNNNNNGG	5 cut(s)	227, 345, 374, 479, 554
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	2 cut(s)	574, 763
BseRI	GAGGAG	2 cut(s)	41, 459
BseXI	GCAGC	1 cut(s)	595
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	350, 655
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	6 cut(s)	63, 251, 346, 415, 651, 670
BslFI	GGGAC	2 cut(s)	350, 709
BslI	CCNNNNNNNGG	5 cut(s)	227, 345, 374, 479, 554
BsmAI	GTCTC	2 cut(s)	298, 611
BsmFI	GGGAC	2 cut(s)	350, 709
BsnI	GGCC	2 cut(s)	350, 655
BsoBI	CYCGRG	1 cut(s)	650
Bsp119I	TTCGAA	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	19, 250
Bsp143I	GATC	1 cut(s)	466
Bsp19I	CCATGG	1 cut(s)	475
BspANI	GGCC	2 cut(s)	350, 655
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	5 cut(s)	50, 67, 249, 366, 574
BspT104I	TTCGAA	1 cut(s)	685
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	574, 763
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	7 cut(s)	94, 220, 475, 536, 649, 650, 692
BssMI	GATC	1 cut(s)	466
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	475, 536
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	222, 693
Bst4CI	ACNGT	2 cut(s)	153, 439
BstACI	GRCGYC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	685
BstC8I	GCNNGC	2 cut(s)	167, 545
BstDEI	CTNAG	3 cut(s)	53, 387, 751
BstDSI	CCRYGG	2 cut(s)	94, 475
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	469, 767
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	3 cut(s)	38, 69, 751
BstHHI	GCGC	3 cut(s)	37, 68, 750
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	2 cut(s)	298, 611
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 86, 391, 504, 652, 675
BstNI	CCWGG	2 cut(s)	222, 693
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	6 cut(s)	220, 250, 345, 649, 650, 691
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	350, 655
BtgI	CCRYGG	2 cut(s)	94, 475
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	469, 767
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	2 cut(s)	444, 735
Cac8I	GCNNGC	2 cut(s)	167, 545
CfoI	GCGC	3 cut(s)	37, 68, 750
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	4 cut(s)	348, 364, 572, 653
Cfr42I	CCGCGG	1 cut(s)	97
Cfr9I	CCCGGG	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	114, 154
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	5 cut(s)	166, 462, 476, 515, 591
CviQI	GTAC	2 cut(s)	114, 154
DdeI	CTNAG	3 cut(s)	53, 387, 751
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DraI	TTTAAA	1 cut(s)	712
DrdI	GACNNNNNNGTC	1 cut(s)	773
DseDI	GACNNNNNNGTC	1 cut(s)	773
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	475, 536
Eco24I	GRGCYC	2 cut(s)	19, 250
Eco47I	GGWCC	2 cut(s)	364, 572
Eco47III	AGCGCT	1 cut(s)	749
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	2 cut(s)	297, 792
Eco88I	CYCGRG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	220, 691
EcoT14I	CCWWGG	2 cut(s)	475, 536
EcoT38I	GRGCYC	2 cut(s)	19, 250
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	475, 536
FaeI	CATG	5 cut(s)	169, 465, 479, 518, 594
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	2 cut(s)	350, 709
FatI	CATG	5 cut(s)	165, 461, 475, 514, 590
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	6 cut(s)	58, 81, 84, 87, 170, 584
FokI	GGATG	2 cut(s)	456, 774
FriOI	GRGCYC	2 cut(s)	19, 250
Fsp4HI	GCNGC	6 cut(s)	58, 81, 84, 87, 170, 584
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	3 cut(s)	36, 67, 749
GluI	GCNGC	6 cut(s)	58, 81, 84, 87, 170, 584
GsaI	CCCAGC	1 cut(s)	408
HaeII	RGCGCY	3 cut(s)	38, 69, 751
HaeIII	GGCC	2 cut(s)	350, 655
HapII	CCGG	6 cut(s)	63, 251, 346, 415, 651, 670
HhaI	GCGC	3 cut(s)	37, 68, 750
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	5 cut(s)	169, 465, 479, 518, 594
Hin6I	GCGC	3 cut(s)	35, 66, 748
HinP1I	GCGC	3 cut(s)	35, 66, 748
HinfI	GANTC	6 cut(s)	335, 457, 619, 682, 697, 767
HpaII	CCGG	6 cut(s)	63, 251, 346, 415, 651, 670
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	3 cut(s)	431, 772, 789
Hpy188III	TCNNGA	2 cut(s)	528, 616
Hpy99I	CGWCG	2 cut(s)	34, 289
HpyAV	CCTTC	2 cut(s)	321, 631
HpyCH4III	ACNGT	2 cut(s)	153, 439
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	5 cut(s)	165, 184, 263, 646, 793
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 86, 391, 504, 652, 675
HpyF3I	CTNAG	3 cut(s)	53, 387, 751
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	169, 465, 479, 518, 594
HspAI	GCGC	3 cut(s)	35, 66, 748
KasI	GGCGCC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	466
KspI	CCGCGG	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	3 cut(s)	54, 65, 253
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	2 cut(s)	435, 780
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	764
MalI	GATC	1 cut(s)	468
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	466
MhlI	GDGCHC	2 cut(s)	19, 250
MluCI	AATT	3 cut(s)	145, 722, 741
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	3 cut(s)	613, 691, 761
MnlI	CCTC	5 cut(s)	62, 355, 437, 476, 481
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	3 cut(s)	144, 215, 711
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	6 cut(s)	63, 251, 346, 415, 651, 670
MspR9I	CCNGG	6 cut(s)	222, 252, 347, 651, 652, 693
MvaI	CCWGG	2 cut(s)	222, 693
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	6 cut(s)	63, 86, 391, 504, 652, 675
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	4 cut(s)	252, 347, 651, 652
NcoI	CCATGG	1 cut(s)	475
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	5 cut(s)	169, 465, 479, 518, 594
NlaIV	GGNNCC	5 cut(s)	50, 67, 249, 366, 574
NmuCI	GTSAC	1 cut(s)	764
NspI	RCATGY	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	685
PaeI	GCATGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	3 cut(s)	335, 457, 682
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	6 cut(s)	59, 82, 85, 88, 171, 585
PleI	GAGTC	3 cut(s)	613, 691, 761
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	3 cut(s)	613, 691, 761
PpuMI	RGGWCCY	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	220, 691
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	2 cut(s)	220, 691
PspN4I	GGNNCC	5 cut(s)	50, 67, 249, 366, 574
PspPI	GGNCC	4 cut(s)	348, 364, 572, 653
PspPPI	RGGWCCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	115, 155
RsaNI	GTAC	2 cut(s)	114, 154
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	19
SacII	CCGCGG	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	144, 215, 711
SatI	GCNGC	6 cut(s)	58, 81, 84, 87, 170, 584
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	4 cut(s)	348, 364, 572, 653
SchI	GAGTC	3 cut(s)	613, 691, 761
ScrFI	CCNGG	6 cut(s)	222, 252, 347, 651, 652, 693
SduI	GDGCHC	2 cut(s)	19, 250
SfaNI	GCATC	2 cut(s)	435, 780
SfoI	GGCGCC	1 cut(s)	67
Sfr303I	CCGCGG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	685
SgrBI	CCGCGG	1 cut(s)	97
SinI	GGWCC	2 cut(s)	364, 572
SmaI	CCCGGG	1 cut(s)	652
SmiMI	CAYNNNNRTG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	3 cut(s)	145, 722, 741
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	6 cut(s)	220, 250, 345, 649, 650, 691
StyI	CCWWGG	2 cut(s)	475, 536
TaaI	ACNGT	2 cut(s)	153, 439
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	4 cut(s)	287, 529, 615, 685
TasI	AATT	3 cut(s)	145, 722, 741
TauI	GCSGC	5 cut(s)	60, 83, 86, 89, 172
TfiI	GAWTC	3 cut(s)	335, 457, 682
Tru1I	TTAA	3 cut(s)	144, 215, 711
Tru9I	TTAA	3 cut(s)	144, 215, 711
TscAI	CASTG	2 cut(s)	444, 735
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	1 cut(s)	583
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	2 cut(s)	470, 773
TspGWI	ACGGA	1 cut(s)	171
TspMI	CCCGGG	1 cut(s)	650
TspRI	CASTG	2 cut(s)	444, 735
VpaK11BI	GGWCC	2 cut(s)	364, 572
VspI	ATTAAT	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	225
XceI	RCATGY	1 cut(s)	169
XmaI	CCCGGG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.