Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Forward (+)

34927237 .. 34928693

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTTTGTGGAGAGCTCGTGTGGTTTCGTCGGCGCTGTTCAATAGGCTCCTCAGCCGCTCCAGCGCCACCGAAACCGCCGCCGCCGCCGCCCACCGCAGTTTCTCCACAGGGGGTACAAGTAGTCAGTTTTTTACTTATGACATTAATTCACAATACGGAAGTTGCATGCCGCTTTCTGCTATGCACATTCAAGCCAAAATACACAACATTGAGTTAAACCCTGGTCAAGGTGGCAAGTTAGTTCGGGCTCCGGGAACTTGTGCAAAGATTTTGAAAGAACCCACGCCGAAAGGTTGTCTTGTGAGACTGCCTTCAGGTGTTGAAAAGTGGATTGATTCCAAGTGCCGGGCTGTTATCGGTGAGGTCCCAAGTCAAGGCAAAAAGCCTAAGAAGCTCTATAAAGCTGGGCAAAGCCGGTGGTTAGGCATCAGACCAACAGTGCGAGGAGTGGCAATGAATCCATGTGATCATCCTCATGGTGGAGGGGAGGGCAAGAGCAAGAGTAGTGGTTCTCATGGAAAATGTTCTCGAACACCATGGGGCAAGCCTTGTAAGGGTGGGTACAAGACTGGACCCAACAAGCGTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

199

Amino Acids

21.23

Weight (kDa)

10.33

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	53 - 181	3.8e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	60
AciI	CCGC	8 cut(s)	58, 78, 81, 84, 87, 90, 97, 173
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	2 cut(s)	118, 566
AfiI	CCNNNNNNNGG	5 cut(s)	230, 348, 377, 482, 557
AgsI	TTSAA	4 cut(s)	43, 194, 277, 326
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	17, 397, 407
AluI	AGCT	3 cut(s)	17, 397, 407
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	301
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	526
AspLEI	GCGC	2 cut(s)	37, 68
AspS9I	GGNCC	2 cut(s)	367, 575
AsuC2I	CCSGG	2 cut(s)	255, 350
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	367, 575
BanII	GRGCYC	2 cut(s)	19, 253
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	225
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	2 cut(s)	255, 350
BcoDI	GTCTC	1 cut(s)	301
BfoI	RGCGCY	2 cut(s)	38, 69
BisI	GCNGC	6 cut(s)	58, 81, 84, 87, 90, 173
BlsI	GCNGC	6 cut(s)	59, 82, 85, 88, 91, 174
Bme1390I	CCNGG	3 cut(s)	225, 255, 350
Bme18I	GGWCC	2 cut(s)	367, 575
BmgT120I	GGNCC	2 cut(s)	367, 575
BmiI	GGNNCC	4 cut(s)	50, 252, 369, 577
BmrFI	CCNGG	3 cut(s)	225, 255, 350
BmsI	GCATC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	255, 350
BsaJI	CCNNGG	2 cut(s)	223, 539
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	5 cut(s)	230, 348, 377, 482, 557
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	223, 539
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	5 cut(s)	230, 348, 377, 482, 557
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	2 cut(s)	41, 462
BseYI	CCCAGC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	254, 349, 418
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	5 cut(s)	230, 348, 377, 482, 557
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	19, 253
Bsp143I	GATC	1 cut(s)	469
Bsp19I	CCATGG	1 cut(s)	539
BspACI	CCGC	8 cut(s)	58, 78, 81, 84, 87, 90, 97, 173
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	4 cut(s)	50, 252, 369, 577
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	223, 539
BssMI	GATC	1 cut(s)	469
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	539
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	170, 548
BstDEI	CTNAG	2 cut(s)	53, 390
BstDSI	CCRYGG	1 cut(s)	539
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	472
BstH2I	RGCGCY	2 cut(s)	38, 69
BstHHI	GCGC	2 cut(s)	37, 68
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 86, 89, 394
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	223, 253, 348
BtgI	CCRYGG	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	170, 548
CfoI	GCGC	2 cut(s)	37, 68
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	367, 575
Csp6I	GTAC	2 cut(s)	117, 565
CspCI	CAANNNNNGTGG	4 cut(s)	401, 436, 490, 525
CviAII	CATG	5 cut(s)	169, 465, 479, 518, 540
CviQI	GTAC	2 cut(s)	117, 565
DdeI	CTNAG	2 cut(s)	53, 390
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	539
Eco24I	GRGCYC	2 cut(s)	19, 253
Eco47I	GGWCC	2 cut(s)	367, 575
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	539
EcoT38I	GRGCYC	2 cut(s)	19, 253
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	5 cut(s)	172, 468, 482, 521, 543
FaiI	YATR	8 cut(s)	141, 170, 185, 402, 466, 480, 519, 541
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	5 cut(s)	168, 464, 478, 517, 539
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	6 cut(s)	58, 81, 84, 87, 90, 173
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	2 cut(s)	19, 253
Fsp4HI	GCNGC	6 cut(s)	58, 81, 84, 87, 90, 173
GlaI	GCGC	2 cut(s)	36, 67
GluI	GCNGC	6 cut(s)	58, 81, 84, 87, 90, 173
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	46
HaeII	RGCGCY	2 cut(s)	38, 69
HapII	CCGG	3 cut(s)	254, 349, 418
HhaI	GCGC	2 cut(s)	37, 68
Hin1II	CATG	5 cut(s)	172, 468, 482, 521, 543
Hin6I	GCGC	2 cut(s)	35, 66
HinP1I	GCGC	2 cut(s)	35, 66
HinfI	GANTC	2 cut(s)	338, 460
HpaII	CCGG	3 cut(s)	254, 349, 418
HphI	GGTGA	1 cut(s)	374
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	1 cut(s)	531
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	3 cut(s)	168, 187, 266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 86, 89, 394
HpyF3I	CTNAG	2 cut(s)	53, 390
Hsp92II	CATG	5 cut(s)	172, 468, 482, 521, 543
HspAI	GCGC	2 cut(s)	35, 66
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	3 cut(s)	54, 65, 256
LweI	GCATC	1 cut(s)	438
MalI	GATC	1 cut(s)	471
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	469
MhlI	GDGCHC	2 cut(s)	19, 253
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	6 cut(s)	62, 358, 440, 479, 484, 486
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	2 cut(s)	147, 218
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	3 cut(s)	254, 349, 418
MspR9I	CCNGG	3 cut(s)	225, 255, 350
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	63, 86, 89, 394
NciI	CCSGG	2 cut(s)	255, 350
NcoI	CCATGG	1 cut(s)	539
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	5 cut(s)	172, 468, 482, 521, 543
NlaIV	GGNNCC	4 cut(s)	50, 252, 369, 577
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	338, 460
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	6 cut(s)	59, 82, 85, 88, 91, 174
PpuMI	RGGWCCY	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	4 cut(s)	50, 252, 369, 577
PspPI	GGNCC	2 cut(s)	367, 575
PspPPI	RGGWCCY	1 cut(s)	367
RsaI	GTAC	2 cut(s)	118, 566
RsaNI	GTAC	2 cut(s)	117, 565
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	147, 218
SatI	GCNGC	6 cut(s)	58, 81, 84, 87, 90, 173
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	2 cut(s)	367, 575
ScrFI	CCNGG	3 cut(s)	225, 255, 350
SduI	GDGCHC	2 cut(s)	19, 253
SetI	ASST	7 cut(s)	19, 235, 298, 322, 369, 399, 409
SfaNI	GCATC	1 cut(s)	438
SinI	GGWCC	2 cut(s)	367, 575
SmiMI	CAYNNNNRTG	1 cut(s)	477
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	8 cut(s)	58, 78, 81, 84, 87, 90, 97, 173
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	223, 253, 348
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	532
TasI	AATT	1 cut(s)	148
TauI	GCSGC	6 cut(s)	60, 83, 86, 89, 92, 175
TfiI	GAWTC	2 cut(s)	338, 460
Tru1I	TTAA	2 cut(s)	147, 218
Tru9I	TTAA	2 cut(s)	147, 218
TscAI	CASTG	1 cut(s)	447
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	367, 575
VspI	ATTAAT	1 cut(s)	147
XagI	CCTNNNNNAGG	1 cut(s)	228
XceI	RCATGY	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.