Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012354

Physical Location & Seq

Genomic Coordinates Forward (+)

17930981 .. 17932173

Gene Structure 1193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0185100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCTCCAAGTTTCAATGATGAAAACTCACTATTCAACTTTGTTGTCAGGGATGGCAATGGCGTGAAGGGCATGGTGGACTTAGGCCTATCCAAAGTACCTGAACAATACATACAACCACCTCATGAGCGTATACTGAAGCTTAATGCAAGCTCACTAAATGAGCTCAGACCAATCGATCTGTCTAAGCTTGATGCGGTTGATCATGAACAAGTGGCTAATGAGATCGTTAATGCTGCCGAGGTTCTTGGGTTCTTCCAAGTTATGAACCATGGCCTACCTGTGGAGTTGCTGGAGTCTCTGAAAGATGCTGCAAACAAGTTCTTCGAGCAAGCGCCGGAGAAGAAAGCTGCTTACTGGAAAGGTGCAAACAAGTTCTTCGAGCAAGCGCCGGAGAAGAAAGCTGCTTACTGGAAAGGTGTGAGCCCGAGCCTGTACGTGAAGTATGGAACGAGTTTTGTGCCGGAGAAAGAGAAGGCTTTGGAGTGGAAGGACTATGTTAGCGTGGTGTACTCCAGTGATGCTGATGCTCTCAATCACTGGCCTAACGAGTGCAAGGAAGTTGCACTTGAGTACCTTAAAACATCAATGCATATGGTAAAGAAAATAGTGAAAACTTTGATTGAGAAGCTCGGAGTAACACTTGAGGACTCAAAACTAGATGGACTCGTTGGGTTAAAGATCGTGAACATGAACTTTTACCCAACATGCCCTAATCCAGAGCTCACTGTCGGAGTTGGGCGTCACTCGGACATGGGCACCTTAACCGTTTTACTGCAAGATGGAATTGGTGGTTTGTATGTGAAGGTTGAAGAAGACATGAATGCTGGAAAGAAAGGAGAGTGGATCGAGATCCCTCCTATCCCTGGAGCTTTGGTCATCAACATTGGCGATACATTACAGATACTTAGTAATGGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

307

Amino Acids

34.08

Weight (kDa)

5.3

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	59 - 119	2e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	229 - 307	2.9e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44065 AT2G44065 AT2G44065
fragaria_vesca	FvH4_3g23010 FvH4_3g23010
malus_domestica	MD02G1002800.v1.1 MD05G1054100.v1.1
prunus_persica	Prupe.3G126000_v2.0.a1 Prupe.7G268400_v2.0.a1
pyrus_communis	pycom05g04430
rosa_chinensis	RchiOBHm_Chr5g0040401
rosa_laevigata	RLG00000033977
rosa_multiflora	Rmu_sc0004516.1_g000006
rosa_roxburghii	Rroxscaffold_1G00040200 Rroxscaffold_1G00040930
rosa_rugosa	Rorug05G0185100
rosa_samantha	Rh5BG276000 Rh5CG309300
rosa_wichuraiana	Rw5G025440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	2 cut(s)	847, 854
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	742
AfaI	GTAC	4 cut(s)	99, 437, 512, 575
AfiI	CCNNNNNNNGG	2 cut(s)	283, 866
AgsI	TTSAA	3 cut(s)	16, 37, 812
AjnI	CCWGG	1 cut(s)	865
AluBI	AGCT	9 cut(s)	142, 153, 166, 190, 350, 404, 631, 724, 872
AluI	AGCT	9 cut(s)	142, 153, 166, 190, 350, 404, 631, 724, 872
Alw21I	GWGCWC	2 cut(s)	168, 726
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	847, 854
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	3 cut(s)	85, 274, 542
ApeKI	GCWGC	4 cut(s)	236, 311, 350, 404
AspLEI	GCGC	2 cut(s)	337, 391
AvaI	CYCGRG	1 cut(s)	427
BaeGI	GKGCMC	1 cut(s)	761
BaeI	ACNNNNGTAYC	2 cut(s)	557, 590
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	3 cut(s)	168, 428, 726
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	168, 726
BbvI	GCAGC	4 cut(s)	223, 298, 337, 391
BccI	CCATC	3 cut(s)	47, 656, 776
BcgI	CGANNNNNNTGC	2 cut(s)	442, 476
BciT130I	CCWGG	1 cut(s)	867
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	659
BfoI	RGCGCY	2 cut(s)	338, 392
BisI	GCNGC	4 cut(s)	237, 312, 351, 405
BlsI	GCNGC	4 cut(s)	238, 313, 352, 406
Bme1390I	CCNGG	1 cut(s)	867
BmeT110I	CYCGRG	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	6, 760
BmrFI	CCNGG	1 cut(s)	867
BmsI	GCATC	4 cut(s)	184, 298, 511, 517
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	3 cut(s)	314, 499, 888
BpuEI	CTTGAG	2 cut(s)	590, 665
Bsa29I	ATCGAT	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	851
BsaHI	GRCGYC	1 cut(s)	742
BsaJI	CCNNGG	3 cut(s)	240, 271, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	861, 891
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 866
Bse1I	ACTGG	4 cut(s)	362, 416, 516, 545
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	851
BseBI	CCWGG	1 cut(s)	867
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	240, 271, 865
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	851
BseLI	CCNNNNNNNGG	2 cut(s)	283, 866
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	4 cut(s)	362, 416, 516, 545
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	4 cut(s)	223, 298, 337, 391
BshFI	GGCC	3 cut(s)	87, 276, 544
BshNI	GGYRCC	1 cut(s)	758
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	168, 726
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	3 cut(s)	338, 392, 464
BslI	CCNNNNNNNGG	2 cut(s)	283, 866
BsmAI	GTCTC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	3 cut(s)	87, 276, 544
BsoBI	CYCGRG	1 cut(s)	427
Bsp1286I	GDGCHC	4 cut(s)	168, 428, 726, 761
Bsp143I	GATC	6 cut(s)	178, 202, 225, 681, 846, 852
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	3 cut(s)	87, 276, 544
BspCNI	CTCAG	1 cut(s)	180
BspDI	ATCGAT	1 cut(s)	177
BspHI	TCATGA	2 cut(s)	124, 205
BspLI	GGNNCC	2 cut(s)	6, 760
BspPI	GGATC	2 cut(s)	847, 854
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	4 cut(s)	362, 416, 516, 545
BssECI	CCNNGG	3 cut(s)	240, 271, 865
BssMI	GATC	6 cut(s)	178, 202, 225, 681, 846, 852
BssNAI	GTATAC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	742
BssT1I	CCWWGG	1 cut(s)	271
Bst1107I	GTATAC	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	2 cut(s)	730, 769
BstACI	GRCGYC	1 cut(s)	742
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	3 cut(s)	151, 333, 387
BstDEI	CTNAG	4 cut(s)	82, 167, 186, 908
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	58
BstH2I	RGCGCY	2 cut(s)	338, 392
BstHHI	GCGC	2 cut(s)	337, 391
BstKTI	GATC	6 cut(s)	181, 205, 228, 684, 849, 855
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	6 cut(s)	178, 202, 225, 681, 846, 852
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	867
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	1 cut(s)	865
BstSLI	GKGCMC	1 cut(s)	761
BstV1I	GCAGC	4 cut(s)	223, 298, 337, 391
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	852
BstZ17I	GTATAC	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	87, 276, 544
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	3 cut(s)	523, 538, 726
Cac8I	GCNNGC	3 cut(s)	151, 333, 387
CciI	TCATGA	2 cut(s)	124, 205
CfoI	GCGC	2 cut(s)	337, 391
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	4 cut(s)	98, 436, 511, 574
CviAII	CATG	8 cut(s)	73, 125, 206, 272, 691, 708, 754, 820
CviQI	GTAC	4 cut(s)	98, 436, 511, 574
DdeI	CTNAG	4 cut(s)	82, 167, 186, 908
DpnI	GATC	6 cut(s)	180, 204, 227, 683, 848, 854
DpnII	GATC	6 cut(s)	178, 202, 225, 681, 846, 852
Ecl136II	GAGCTC	2 cut(s)	166, 724
Eco130I	CCWWGG	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	87
Eco24I	GRGCYC	3 cut(s)	168, 428, 726
Eco53kI	GAGCTC	2 cut(s)	166, 724
Eco57I	CTGAAG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	427
EcoICRI	GAGCTC	2 cut(s)	166, 724
EcoRII	CCWGG	1 cut(s)	865
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	594
EcoT38I	GRGCYC	3 cut(s)	168, 428, 726
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	8 cut(s)	76, 128, 209, 275, 694, 711, 757, 823
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FatI	CATG	8 cut(s)	72, 124, 205, 271, 690, 707, 753, 819
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	237, 312, 351, 405
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	3 cut(s)	168, 428, 726
Fsp4HI	GCNGC	4 cut(s)	237, 312, 351, 405
FspBI	CTAG	1 cut(s)	659
GlaI	GCGC	2 cut(s)	336, 390
GluI	GCNGC	4 cut(s)	237, 312, 351, 405
GsuI	CTGGAG	3 cut(s)	314, 499, 888
HaeII	RGCGCY	2 cut(s)	338, 392
HaeIII	GGCC	3 cut(s)	87, 276, 544
HapII	CCGG	3 cut(s)	338, 392, 464
HgaI	GACGC	1 cut(s)	731
HhaI	GCGC	2 cut(s)	337, 391
Hin1I	GRCGYC	1 cut(s)	742
Hin1II	CATG	8 cut(s)	76, 128, 209, 275, 694, 711, 757, 823
Hin6I	GCGC	2 cut(s)	335, 389
HinP1I	GCGC	2 cut(s)	335, 389
HindIII	AAGCTT	2 cut(s)	140, 188
HinfI	GANTC	3 cut(s)	296, 650, 666
HpaII	CCGG	3 cut(s)	338, 392, 464
Hpy166II	GTNNAC	4 cut(s)	79, 134, 511, 688
Hpy188I	TCNGA	5 cut(s)	170, 303, 635, 734, 751
Hpy188III	TCNNGA	5 cut(s)	125, 206, 685, 719, 850
Hpy8I	GTNNAC	4 cut(s)	79, 134, 511, 688
HpyAV	CCTTC	4 cut(s)	61, 469, 484, 799
HpyCH4III	ACNGT	2 cut(s)	730, 769
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	7 cut(s)	149, 314, 368, 555, 566, 592, 778
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	4 cut(s)	82, 167, 186, 908
HpySE526I	ACGT	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	742
Hsp92II	CATG	8 cut(s)	76, 128, 209, 275, 694, 711, 757, 823
HspAI	GCGC	2 cut(s)	335, 389
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	6 cut(s)	178, 202, 225, 681, 846, 852
LmnI	GCTCC	2 cut(s)	10, 869
Lsp1109I	GCAGC	4 cut(s)	223, 298, 337, 391
LweI	GCATC	4 cut(s)	184, 298, 511, 517
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	637, 743
MalI	GATC	6 cut(s)	180, 204, 227, 683, 848, 854
MboI	GATC	6 cut(s)	178, 202, 225, 681, 846, 852
MboII	GAAGA	7 cut(s)	247, 316, 355, 370, 409, 824, 827
MflI	RGATCY	1 cut(s)	852
MhlI	GDGCHC	4 cut(s)	168, 428, 726, 761
MluCI	AATT	1 cut(s)	786
MlyI	GAGTC	3 cut(s)	305, 644, 660
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	4 cut(s)	132, 235, 640, 867
Mph1103I	ATGCAT	1 cut(s)	594
MseI	TTAA	5 cut(s)	144, 231, 579, 677, 764
MspI	CCGG	3 cut(s)	338, 392, 464
MspR9I	CCNGG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	829
MvaI	CCWGG	1 cut(s)	867
MwoI	GCNNNNNNNGC	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	6 cut(s)	178, 202, 225, 681, 846, 852
NlaIII	CATG	8 cut(s)	76, 128, 209, 275, 694, 711, 757, 823
NlaIV	GGNNCC	2 cut(s)	6, 760
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	743
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	1 cut(s)	711
PagI	TCATGA	2 cut(s)	124, 205
PceI	AGGCCT	1 cut(s)	87
PctI	GAATGC	1 cut(s)	829
PkrI	GCNGC	4 cut(s)	238, 313, 352, 406
PleI	GAGTC	3 cut(s)	304, 644, 660
PpsI	GAGTC	3 cut(s)	304, 644, 660
Ppu21I	YACGTR	1 cut(s)	439
Psp124BI	GAGCTC	2 cut(s)	168, 726
Psp6I	CCWGG	1 cut(s)	865
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	2 cut(s)	6, 760
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PsuI	RGATCY	1 cut(s)	852
RsaI	GTAC	4 cut(s)	99, 437, 512, 575
RsaNI	GTAC	4 cut(s)	98, 436, 511, 574
SacI	GAGCTC	2 cut(s)	168, 726
SaqAI	TTAA	5 cut(s)	144, 231, 579, 677, 764
SatI	GCNGC	4 cut(s)	237, 312, 351, 405
Sau3AI	GATC	6 cut(s)	178, 202, 225, 681, 846, 852
SchI	GAGTC	3 cut(s)	305, 644, 660
ScrFI	CCNGG	1 cut(s)	867
SduI	GDGCHC	4 cut(s)	168, 428, 726, 761
SfaNI	GCATC	4 cut(s)	184, 298, 511, 517
SmlI	CTYRAG	2 cut(s)	569, 644
SmoI	CTYRAG	2 cut(s)	569, 644
Sse9I	AATT	1 cut(s)	786
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	659
SstI	GAGCTC	2 cut(s)	168, 726
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	865
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	730, 769
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	4 cut(s)	177, 327, 381, 849
TasI	AATT	1 cut(s)	786
TatI	WGTACW	1 cut(s)	510
Tru1I	TTAA	5 cut(s)	144, 231, 579, 677, 764
Tru9I	TTAA	5 cut(s)	144, 231, 579, 677, 764
TscAI	CASTG	3 cut(s)	523, 545, 733
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	4 cut(s)	236, 311, 350, 404
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	5 cut(s)	36, 222, 281, 707, 836
TspRI	CASTG	3 cut(s)	523, 545, 733
XceI	RCATGY	1 cut(s)	711
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.