AT2G44330

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013104
Physical Location & Seq
Forward (+)
18310586 .. 18311185
600 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44330.1

Sequence Viewer

Length: 543 bp
ATGTCGTCCTCCTCTACCCAAAACCAATTGGAGATGCGGGATTACACGTGTCCGGAATGTAACATAGGTCTTAGGGTTCTCTCATTGCCTTCCGCTTCTCCTCCATACTGTCCTCTATGCAATGTCGCTTCTTACTTCACTTCTTCGACCCCTTTTGAAGTAGGTCCTAATCCTTTCGAAGACGATGAGGAATCTCAGTTTCTCGATCCCATGGAATCTCTTCCGACCATTAAGATCTCATCTTCAATGTTGTCTTCCGCTTCCTCAGACGATTCTGCTTTACCATGTGCCATTTGCAGAGAAGATTTCGTGGTTGGAGAATCTGCTAGGAGATTGCCATGCAACCATTTATACCATAATGATTGCATTATTCCTTGGCTCACAAGTCATAACTCGTGCCCTCTCTGTCGAGTTGAGCTCCCGGTTGCATCTAGTGAAGACGATAGTGGTCTGGACATGTGGTTTGATGCTTTGAACCTAGAGGACGACTTGGAGGAAGAAGCGGGAGTCACGCTCGATTTGGAGCAAAGTTTAGACGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

180

Amino Acids

19.77

Weight (kDa)

4.05

Isoelectric Point (pI)

68.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 96 - 137 1.4e-14 Ring finger domain
zf-RING_11 PF17123 96 - 123 1.9e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 96 - 136 3.8e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 96 - 136 7.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 113 - 137 6.1e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44330 AT3G60080
fragaria_vesca FvH4_7g00020 FvH4_7g00020
malus_domestica MD02G1319700.v1.1
prunus_persica Prupe.2G002400_v2.0.a1 Prupe.8G211400_v2.0.a1
pyrus_communis pycom02g26770
rosa_chinensis RchiOBHm_Chr1g0313221
rosa_laevigata RLG00000030812
rosa_multiflora Rmu_sc0013586.1_g000001 Rmu_sc0027690.1_g000001
rosa_roxburghii Rroxscaffold_4G00332330
rosa_rugosa RorugPtG0001800.1
rosa_samantha Rh1AG001800 Rh1CG004000 Rh1DG001700
rosa_wichuraiana Rw1G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 4 cut(s) 37, 93, 258, 503
AclWI GGATC 1 cut(s) 200
AcvI CACGTG 1 cut(s) 48
AflIII ACRYGT 3 cut(s) 45, 47, 456
AgsI TTSAA 3 cut(s) 158, 246, 475
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 52
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp700I GAANNNNTTC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 422
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 420
BauI CACGAG 1 cut(s) 394
BbrPI CACGTG 1 cut(s) 48
BbsI GAAGAC 3 cut(s) 186, 246, 444
Bbv12I GWGCWC 1 cut(s) 420
BcnI CCSGG 1 cut(s) 422
BfaI CTAG 3 cut(s) 327, 432, 479
BglII AGATCT 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 3 cut(s) 24, 437, 457
BpiI GAAGAC 3 cut(s) 186, 246, 444
BplI GAGNNNNNCTC 4 cut(s) 402, 434, 498, 530
Bpu14I TTCGAA 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 422
BsaAI YACGTR 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 210, 374
BsaWI WCCGGW 1 cut(s) 52
Bse3DI GCAATG 2 cut(s) 83, 127
BseAI TCCGGA 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 210, 374
BseMI GCAATG 2 cut(s) 83, 127
BseMII CTCAG 2 cut(s) 209, 279
BseRI GAGGAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 2 cut(s) 53, 422
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 401, 420
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 2 cut(s) 205, 234
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 4 cut(s) 37, 93, 258, 503
BspCNI CTCAG 2 cut(s) 208, 278
BspEI TCCGGA 1 cut(s) 52
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 177
BsrDI GCAATG 2 cut(s) 83, 127
BssECI CCNNGG 2 cut(s) 210, 374
BssMI GATC 2 cut(s) 205, 234
BssSI CACGAG 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 210, 374
Bst2BI CACGAG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 71, 195, 265
BstDSI CCRYGG 1 cut(s) 210
BstKTI GATC 2 cut(s) 208, 237
BstMBI GATC 2 cut(s) 205, 234
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 401
BstV2I GAAGAC 3 cut(s) 186, 246, 444
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 164
CviAII CATG 4 cut(s) 211, 285, 339, 457
CviJI RGCY 3 cut(s) 379, 418, 540
CviKI_1 RGCY 3 cut(s) 379, 418, 540
DdeI CTNAG 3 cut(s) 71, 195, 265
DpnI GATC 2 cut(s) 207, 236
DpnII GATC 2 cut(s) 205, 234
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 2 cut(s) 210, 374
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 418
Eco72I CACGTG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 210, 374
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 210, 374
FaeI CATG 4 cut(s) 214, 288, 342, 460
FatI CATG 4 cut(s) 210, 284, 338, 456
FauI CCCGC 2 cut(s) 30, 496
FriOI GRGCYC 1 cut(s) 420
FspBI CTAG 3 cut(s) 327, 432, 479
HapII CCGG 2 cut(s) 53, 422
Hin1II CATG 4 cut(s) 214, 288, 342, 460
HinfI GANTC 5 cut(s) 191, 215, 272, 320, 507
HpaII CCGG 2 cut(s) 53, 422
Hpy188I TCNGA 2 cut(s) 225, 268
Hpy188III TCNNGA 3 cut(s) 53, 203, 452
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 120, 297, 342, 366, 428
HpyF3I CTNAG 3 cut(s) 71, 195, 265
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 4 cut(s) 214, 288, 342, 460
Kpn2I TCCGGA 1 cut(s) 52
Kzo9I GATC 2 cut(s) 205, 234
LmnI GCTCC 2 cut(s) 423, 523
LpnPI CCDG 3 cut(s) 66, 435, 437
LweI GCATC 3 cut(s) 24, 437, 457
MaeI CTAG 3 cut(s) 327, 432, 479
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 59, 508
MalI GATC 2 cut(s) 207, 236
MboI GATC 2 cut(s) 205, 234
MboII GAAGA 8 cut(s) 135, 191, 212, 234, 246, 314, 449, 509
MfeI CAATTG 1 cut(s) 26
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 2 cut(s) 401, 420
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 516
MmeI TCCRAC 2 cut(s) 248, 295
MnlI CCTC 9 cut(s) 19, 22, 111, 123, 181, 274, 411, 475, 487
MroI TCCGGA 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 1 cut(s) 231
MspI CCGG 2 cut(s) 53, 422
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 26
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 1 cut(s) 210
NdeII GATC 2 cut(s) 205, 234
NlaIII CATG 4 cut(s) 214, 288, 342, 460
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 1 cut(s) 460
NspV TTCGAA 1 cut(s) 177
PciI ACATGT 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 4 cut(s) 191, 215, 272, 320
PleI GAGTC 1 cut(s) 515
PmaCI CACGTG 1 cut(s) 48
PmlI CACGTG 1 cut(s) 48
PpsI GAGTC 1 cut(s) 515
Ppu21I YACGTR 1 cut(s) 48
PpuMI RGGWCCY 1 cut(s) 164
PscI ACATGT 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 164
PspCI CACGTG 1 cut(s) 48
PspPI GGNCC 1 cut(s) 164
PspPPI RGGWCCY 1 cut(s) 164
PsuI RGATCY 1 cut(s) 234
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 2 cut(s) 205, 234
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 2 cut(s) 401, 420
SetI ASST 5 cut(s) 50, 70, 166, 420, 480
SfaNI GCATC 3 cut(s) 24, 437, 457
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 1 cut(s) 164
Sse9I AATT 1 cut(s) 26
SsiI CCGC 4 cut(s) 37, 93, 258, 503
SspMI CTAG 3 cut(s) 327, 432, 479
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 2 cut(s) 210, 374
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 50
TaqI TCGA 5 cut(s) 146, 177, 204, 409, 516
TasI AATT 1 cut(s) 26
TfiI GAWTC 4 cut(s) 191, 215, 272, 320
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseFI GTSAC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 164
XceI RCATGY 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 3 cut(s) 327, 432, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.