Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013104

Physical Location & Seq

Genomic Coordinates Reverse (-)

37388864 .. 37389801

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1319700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGATGATCACCATCATCAGACGTTCTGGTGCCACGAGTGCGACATGAGCGTGAGCCTCCTGCCTTTGCCCACTTCTTTTTCCCGGGAGAGGGAGAGGGAGAGGGACACTCTTCTCTGCCCTCACTGCTTCAGCGACCTCTTGGAGCTCATGGATTCTGATTCTCTTCAGCACGACTCCCTCATCCTCCAACCGCCACCACACCAGCCACATCCCCACAGCGATAACTACCTCCTCAACAGCCCATTCCTACATCGACTCATCCACCACCTCTCCACCCACCCCATCAACCACGATGACCTCCTCCCTTCTGCCACCGCCTCTTCCTCCTCCGTTCCCCCTTCCTCCCTCCCTGCCTCCAAGGCCTCCGTCGACTCCATCCCCACCCTCAAGATCACCTCCTCGATGCTCGATCGTGACCCTCTTCTCCTCTGCGCCGTCTGCAAGGAACAATTTCTCCACTCCGTCGACGCCAAGCAGCTTCCTTGCAACCACCTGTACCACCCCCACTGCATTCTCCCATGGCTCTCTTCCCACAGCTCTTGCCCTCTCTGCCGCTTCCAGCTCCCCACCGAAACTCAGCACCACCAGCTTCAGCTTGGCCACCATACCCCCTTGCGCTTCAACTTCGACAATGACGACGACGAGGACCTCAACGATTGGTTTACGGAATATGGGTCCTCCTCCTCCTATGGAACCAGTCTCCGTCCCAACTACATTTCGGCCGGTGGAAGACACATGGCCAACCAAGCACATTTGGGTCCTGCCGCAGCCCCCAATTTCAATGCCAATGCCAATGCCGATTCTTCTTTCAACGGTTGCTTTGTTTTCCTTTTCCTTCTCTTTGTCGTTAATCAAATCTTATATTGTTGTTGTCTGCTCTCTGCTGTATGTGTGTTGTATTGTATTAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

306

Amino Acids

34.31

Weight (kDa)

5.78

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 51	2.1e-07	zinc-ribbon
zf-RING_2	PF13639	145 - 186	3.9e-11	Ring finger domain
zf-C3HC4_2	PF13923	145 - 185	2.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	145 - 186	2.7e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44330 AT3G60080
fragaria_vesca	FvH4_7g00020 FvH4_7g00020
malus_domestica	MD02G1319700.v1.1
prunus_persica	Prupe.2G002400_v2.0.a1 Prupe.8G211400_v2.0.a1
pyrus_communis	pycom02g26770
rosa_chinensis	RchiOBHm_Chr1g0313221
rosa_laevigata	RLG00000030812
rosa_multiflora	Rmu_sc0013586.1_g000001 Rmu_sc0027690.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332330
rosa_rugosa	RorugPtG0001800.1
rosa_samantha	Rh1AG001800 Rh1CG004000 Rh1DG001700
rosa_wichuraiana	Rw1G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	30
AccI	GTMKAC	2 cut(s)	372, 468
AciI	CCGC	4 cut(s)	194, 318, 556, 768
AcoI	YGGCCR	3 cut(s)	601, 723, 741
AcuI	CTGAAG	3 cut(s)	115, 152, 578
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	90, 91
AgsI	TTSAA	3 cut(s)	625, 784, 814
AloI	GAACNNNNNNTCC	2 cut(s)	441, 473
AluBI	AGCT	6 cut(s)	148, 481, 540, 565, 592, 598
AluI	AGCT	6 cut(s)	148, 481, 540, 565, 592, 598
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	4 cut(s)	363, 601, 723, 741
ApeKI	GCWGC	2 cut(s)	478, 770
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	437, 621
AspS9I	GGNCC	3 cut(s)	649, 678, 761
AsuC2I	CCSGG	2 cut(s)	85, 86
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	3 cut(s)	649, 678, 761
BalI	TGGCCA	2 cut(s)	603, 743
BanI	GGYRCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	739
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	490, 782
BccI	CCATC	3 cut(s)	21, 293, 386
BceAI	ACGGC	1 cut(s)	422
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	85, 86
BcoDI	GTCTC	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	4 cut(s)	479, 556, 768, 771
BlsI	GCNGC	4 cut(s)	480, 557, 769, 772
Bme1390I	CCNGG	2 cut(s)	85, 86
Bme18I	GGWCC	3 cut(s)	649, 678, 761
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	3 cut(s)	649, 678, 761
BmiI	GGNNCC	4 cut(s)	32, 679, 697, 762
BmrFI	CCNGG	2 cut(s)	85, 86
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	739
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	2 cut(s)	85, 86
BsaBI	GATNNNNATC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	84, 360, 521
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 441, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 91
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	699
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	84, 360, 521
BseGI	GGATG	5 cut(s)	10, 183, 211, 261, 378
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	90, 91
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	7 cut(s)	224, 293, 319, 391, 419, 673, 676
BseX3I	CGGCCG	1 cut(s)	723
BseXI	GCAGC	2 cut(s)	490, 782
Bsh1285I	CGRYCG	2 cut(s)	415, 726
BshFI	GGCC	4 cut(s)	365, 603, 725, 743
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	2 cut(s)	415, 726
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	85, 726
BslFI	GGGAC	2 cut(s)	119, 693
BslI	CCNNNNNNNGG	2 cut(s)	90, 91
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	2 cut(s)	119, 693
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	4 cut(s)	365, 603, 725, 743
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	7, 393, 412
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	4 cut(s)	194, 318, 556, 768
BspANI	GGCC	4 cut(s)	365, 603, 725, 743
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	4 cut(s)	32, 679, 697, 762
BspT107I	GGYRCC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	3 cut(s)	84, 360, 521
BssMI	GATC	3 cut(s)	7, 393, 412
BssNI	GRCGYC	1 cut(s)	471
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	360, 521
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	818
Bst6I	CTCTTC	5 cut(s)	117, 171, 328, 429, 535
BstACI	GRCGYC	1 cut(s)	471
BstDEI	CTNAG	1 cut(s)	579
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	5 cut(s)	10, 183, 211, 261, 378
BstHHI	GCGC	2 cut(s)	437, 621
BstKTI	GATC	3 cut(s)	10, 396, 415
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	3 cut(s)	7, 393, 412
BstMCI	CGRYCG	2 cut(s)	415, 726
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 48, 126, 362, 441, 552, 589, 749
BstSCI	CCNGG	2 cut(s)	83, 84
BstV1I	GCAGC	2 cut(s)	490, 782
BstV2I	GAAGAC	1 cut(s)	739
BstZI	CGGCCG	1 cut(s)	723
BsuRI	GGCC	4 cut(s)	365, 603, 725, 743
BtgI	CCRYGG	1 cut(s)	521
BtsCI	GGATG	5 cut(s)	10, 183, 211, 261, 378
BtsI	GCAGTG	2 cut(s)	124, 508
BtsIMutI	CAGTG	2 cut(s)	124, 508
CfoI	GCGC	2 cut(s)	437, 621
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	3 cut(s)	649, 678, 761
Cfr9I	CCCGGG	1 cut(s)	84
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	524, 559
CviAII	CATG	4 cut(s)	46, 151, 522, 739
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	3 cut(s)	9, 395, 414
DpnII	GATC	3 cut(s)	7, 393, 412
EaeI	YGGCCR	3 cut(s)	601, 723, 741
EagI	CGGCCG	1 cut(s)	723
Eam1104I	CTCTTC	5 cut(s)	117, 171, 328, 429, 535
EarI	CTCTTC	5 cut(s)	117, 171, 328, 429, 535
Ecl136II	GAGCTC	1 cut(s)	148
EclXI	CGGCCG	1 cut(s)	723
Eco130I	CCWWGG	2 cut(s)	360, 521
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	649, 678, 761
Eco52I	CGGCCG	1 cut(s)	723
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	115, 152, 578
Eco88I	CYCGRG	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	3 cut(s)	649, 678, 761
EcoT14I	CCWWGG	2 cut(s)	360, 521
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	360, 521
FaeI	CATG	4 cut(s)	49, 154, 525, 742
FaqI	GGGAC	2 cut(s)	119, 693
FatI	CATG	4 cut(s)	45, 150, 521, 738
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	2 cut(s)	372, 468
Fnu4HI	GCNGC	4 cut(s)	479, 556, 768, 771
FokI	GGATG	5 cut(s)	17, 170, 198, 248, 365
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	4 cut(s)	479, 556, 768, 771
GlaI	GCGC	2 cut(s)	436, 620
GluI	GCNGC	4 cut(s)	479, 556, 768, 771
HaeIII	GGCC	4 cut(s)	365, 603, 725, 743
HapII	CCGG	2 cut(s)	85, 726
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	2 cut(s)	437, 621
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	49, 154, 525, 742
Hin6I	GCGC	2 cut(s)	435, 619
HinP1I	GCGC	2 cut(s)	435, 619
HincII	GTYRAC	2 cut(s)	373, 469
HindII	GTYRAC	2 cut(s)	373, 469
HinfI	GANTC	6 cut(s)	155, 161, 176, 258, 374, 803
HpaII	CCGG	2 cut(s)	85, 726
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	3 cut(s)	373, 469, 666
Hpy188I	TCNGA	2 cut(s)	21, 160
Hpy188III	TCNNGA	2 cut(s)	391, 416
Hpy8I	GTNNAC	3 cut(s)	373, 469, 666
Hpy99I	CGWCG	5 cut(s)	374, 470, 473, 644, 647
HpyAV	CCTTC	3 cut(s)	318, 351, 848
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	444, 489, 513
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 48, 126, 362, 441, 552, 589, 749
HpyF3I	CTNAG	1 cut(s)	579
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	49, 154, 525, 742
HspAI	GCGC	2 cut(s)	435, 619
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 393, 412
LmnI	GCTCC	2 cut(s)	145, 570
Lsp1109I	GCAGC	2 cut(s)	490, 782
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	3 cut(s)	9, 395, 414
MboI	GATC	3 cut(s)	7, 393, 412
MboII	GAAGA	7 cut(s)	104, 158, 315, 416, 522, 744, 798
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	2 cut(s)	603, 743
MluCI	AATT	2 cut(s)	452, 778
MluNI	TGGCCA	2 cut(s)	603, 743
MlyI	GAGTC	3 cut(s)	170, 252, 368
MmeI	TCCRAC	1 cut(s)	214
Mox20I	TGGCCA	2 cut(s)	603, 743
MroXI	GAANNNNTTC	1 cut(s)	453
MscI	TGGCCA	2 cut(s)	603, 743
MseI	TTAA	2 cut(s)	852, 909
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	2 cut(s)	603, 743
MspI	CCGG	2 cut(s)	85, 726
MspR9I	CCNGG	2 cut(s)	85, 86
Mva1269I	GAATGC	1 cut(s)	513
MwoI	GCNNNNNNNGC	8 cut(s)	39, 48, 126, 362, 441, 552, 589, 749
NciI	CCSGG	2 cut(s)	85, 86
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	3 cut(s)	7, 393, 412
NlaIII	CATG	4 cut(s)	49, 154, 525, 742
NlaIV	GGNNCC	4 cut(s)	32, 679, 697, 762
NmuCI	GTSAC	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	155, 161, 803
PkrI	GCNGC	4 cut(s)	480, 557, 769, 772
Ple19I	CGATCG	1 cut(s)	415
PleI	GAGTC	3 cut(s)	170, 252, 368
PpsI	GAGTC	3 cut(s)	170, 252, 368
PpuMI	RGGWCCY	3 cut(s)	649, 678, 761
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	3 cut(s)	649, 678, 761
PspN4I	GGNNCC	4 cut(s)	32, 679, 697, 762
PspPI	GGNCC	3 cut(s)	649, 678, 761
PspPPI	RGGWCCY	3 cut(s)	649, 678, 761
PvuI	CGATCG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	150
SalI	GTCGAC	2 cut(s)	371, 467
SaqAI	TTAA	2 cut(s)	852, 909
SatI	GCNGC	4 cut(s)	479, 556, 768, 771
Sau3AI	GATC	3 cut(s)	7, 393, 412
Sau96I	GGNCC	3 cut(s)	649, 678, 761
SchI	GAGTC	3 cut(s)	170, 252, 368
ScrFI	CCNGG	2 cut(s)	85, 86
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	396
SgrDI	CGTCGACG	1 cut(s)	467
SinI	GGWCC	3 cut(s)	649, 678, 761
SmaI	CCCGGG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	452, 778
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	4 cut(s)	194, 318, 556, 768
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	83, 84
StyI	CCWWGG	2 cut(s)	360, 521
TaaI	ACNGT	1 cut(s)	818
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	6 cut(s)	256, 372, 404, 411, 468, 630
TasI	AATT	2 cut(s)	452, 778
TauI	GCSGC	2 cut(s)	558, 770
TfiI	GAWTC	3 cut(s)	155, 161, 803
Tru1I	TTAA	2 cut(s)	852, 909
Tru9I	TTAA	2 cut(s)	852, 909
TscAI	CASTG	2 cut(s)	131, 515
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	478, 770
Tsp45I	GTSAC	1 cut(s)	416
TspGWI	ACGGA	5 cut(s)	322, 358, 454, 683, 695
TspMI	CCCGGG	1 cut(s)	84
TspRI	CASTG	2 cut(s)	131, 515
VpaK11BI	GGWCC	3 cut(s)	649, 678, 761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XmaI	CCCGGG	1 cut(s)	84
XmiI	GTMKAC	2 cut(s)	372, 468
XmnI	GAANNNNTTC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.