Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013104

Physical Location & Seq

Genomic Coordinates Forward (+)

22187275 .. 22188934

Gene Structure 1660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCGTCTTCCACCACCACAACAACCACCGTCCACGGCGAGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTATCCCTCCTCTCCTCCTCCGATTCCGATTCCGATTCCTCTCCTCTGTTATGTCCCCAATGCCGTGTCGATTTCCTCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATTTTGAAGAACAAGACGGAGAAAACGATGATGAAGACGACGAAGAAGATTGGTGTTTCGTTGATCCAGCTGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCTTCTTCGTCATCTCGCTTCCGATAATTCAGGATCGTCTTCTTCTTCCTCGTCTTCATCTTCTTCTTCGTTATTGAAATCTTCAGATATCGATTCGATCCCCACGATTCAGATCTCGTCTTCTTTGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTTTGCAAAGAGGATTTCATCATCGGAGAATCTGCTCGGAGATTACCGTGTAGTCATATATACCACTCCGATTGCATCGTCCCTTGGCTCTCGGATCATAACTCGTGTCCGCTTTGTAGATTTGAGCTCCCTACGACGGCGAAGGTGGGAATCGGTGGCTCAGAGGCTGAGATGAGAATCAGATTATCGGATCTGGCTACGATTGCTGCAGATGGTGATGATGTGGAAGATGATTGGCTTGGAATCAGAAACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGGAGAGGAATTTGGCTAGGACTGTTTCAGGTCTTGGAATTGGTATGAGAAGAAGAGAAGAGATTGAAGCAGACAGAAGCAACGTCACAACGACGCCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

306

Amino Acids

33.8

Weight (kDa)

4.39

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	19 - 57	5e-11	zinc-ribbon
zf-RING_2	PF13639	169 - 210	8.3e-13	Ring finger domain
zf-RING_11	PF17123	169 - 196	2e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	169 - 209	1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	169 - 209	5.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	186 - 210	6.7e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44330 AT3G60080
fragaria_vesca	FvH4_7g00020 FvH4_7g00020
malus_domestica	MD02G1319700.v1.1
prunus_persica	Prupe.2G002400_v2.0.a1 Prupe.8G211400_v2.0.a1
pyrus_communis	pycom02g26770
rosa_chinensis	RchiOBHm_Chr1g0313221
rosa_laevigata	RLG00000030812
rosa_multiflora	Rmu_sc0013586.1_g000001 Rmu_sc0027690.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332330
rosa_rugosa	RorugPtG0001800.1
rosa_samantha	Rh1AG001800 Rh1CG004000 Rh1DG001700
rosa_wichuraiana	Rw1G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	780
AccII	CGCG	1 cut(s)	764
AciI	CCGC	1 cut(s)	620
AclWI	GGATC	7 cut(s)	180, 275, 376, 427, 479, 612, 708
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	911
AfiI	CCNNNNNNNGG	1 cut(s)	646
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	3 cut(s)	224, 412, 884
AluBI	AGCT	2 cut(s)	287, 637
AluI	AGCT	2 cut(s)	287, 637
Alw21I	GWGCWC	1 cut(s)	639
AlwI	GGATC	7 cut(s)	180, 275, 376, 427, 479, 612, 708
AlwNI	CAGNNNCTG	1 cut(s)	677
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	826
AspLEI	GCGC	1 cut(s)	509
AsuHPI	GGTGA	3 cut(s)	227, 323, 737
BanII	GRGCYC	1 cut(s)	639
BauI	CACGAG	1 cut(s)	613
BbsI	GAAGAC	6 cut(s)	258, 329, 366, 381, 447, 778
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	3 cut(s)	218, 716, 811
BceAI	ACGGC	4 cut(s)	52, 132, 494, 663
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	1 cut(s)	717
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
BmsI	GCATC	1 cut(s)	594
BpiI	GAAGAC	6 cut(s)	258, 329, 366, 381, 447, 778
Bsa29I	ATCGAT	1 cut(s)	426
BsaBI	GATNNNNATC	3 cut(s)	446, 483, 686
BsaHI	GRCGYC	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	34, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse1I	ACTGG	2 cut(s)	65, 780
Bse8I	GATNNNNATC	3 cut(s)	446, 483, 686
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	34, 593
BseJI	GATNNNNATC	3 cut(s)	446, 483, 686
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMII	CTCAG	2 cut(s)	669, 684
BseNI	ACTGG	2 cut(s)	65, 780
BseRI	GAGGAG	5 cut(s)	83, 88, 91, 117, 302
BseXI	GCAGC	1 cut(s)	703
Bsh1236I	CGCG	1 cut(s)	764
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	639
BslFI	GGGAC	2 cut(s)	123, 575
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmFI	GGGAC	2 cut(s)	123, 575
BsmI	GAATGC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	8 cut(s)	172, 280, 368, 432, 447, 484, 604, 700
BspACI	CCGC	1 cut(s)	620
BspCNI	CTCAG	2 cut(s)	670, 683
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	764
BspHI	TCATGA	2 cut(s)	67, 787
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	7 cut(s)	180, 275, 376, 427, 479, 612, 708
BsrI	ACTGG	2 cut(s)	65, 780
BssECI	CCNNGG	2 cut(s)	34, 593
BssMI	GATC	8 cut(s)	172, 280, 368, 432, 447, 484, 604, 700
BssNI	GRCGYC	1 cut(s)	911
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	593
Bst2BI	CACGAG	1 cut(s)	613
Bst4CI	ACNGT	4 cut(s)	31, 335, 558, 841
Bst6I	CTCTTC	2 cut(s)	865, 870
BstACI	GRCGYC	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	670, 678
BstDSI	CCRYGG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	764
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	8 cut(s)	175, 283, 371, 435, 450, 487, 607, 703
BstMBI	GATC	8 cut(s)	172, 280, 368, 432, 447, 484, 604, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 713
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	1 cut(s)	703
BstV2I	GAAGAC	6 cut(s)	258, 329, 366, 381, 447, 778
BstX2I	RGATCY	3 cut(s)	447, 484, 700
BstYI	RGATCY	3 cut(s)	447, 484, 700
Bsu15I	ATCGAT	1 cut(s)	426
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	41
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	2 cut(s)	67, 787
CfoI	GCGC	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	426
CspCI	CAANNNNNGTGG	2 cut(s)	563, 598
CviAII	CATG	2 cut(s)	68, 788
DdeI	CTNAG	2 cut(s)	670, 678
DpnI	GATC	8 cut(s)	174, 282, 370, 434, 449, 486, 606, 702
DpnII	GATC	8 cut(s)	172, 280, 368, 432, 447, 484, 604, 700
DrdI	GACNNNNNNGTC	1 cut(s)	780
DseDI	GACNNNNNNGTC	1 cut(s)	780
Eam1104I	CTCTTC	2 cut(s)	865, 870
EarI	CTCTTC	2 cut(s)	865, 870
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	639
Eco32I	GATATC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	2 cut(s)	71, 791
FaqI	GGGAC	2 cut(s)	123, 575
FatI	CATG	2 cut(s)	67, 787
Fnu4HI	GCNGC	1 cut(s)	717
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	1 cut(s)	717
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	911
Hin1II	CATG	2 cut(s)	71, 791
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HphI	GGTGA	3 cut(s)	227, 323, 737
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188III	TCNNGA	5 cut(s)	68, 176, 366, 488, 788
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	5 cut(s)	54, 260, 649, 786, 913
HpyAV	CCTTC	2 cut(s)	338, 646
HpyCH4III	ACNGT	4 cut(s)	31, 335, 558, 841
HpyCH4IV	ACGT	3 cut(s)	166, 204, 900
HpyCH4V	TGCA	3 cut(s)	516, 585, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 713
HpyF3I	CTNAG	2 cut(s)	670, 678
HpySE526I	ACGT	3 cut(s)	166, 204, 900
Hsp92I	GRCGYC	1 cut(s)	911
Hsp92II	CATG	2 cut(s)	71, 791
HspAI	GCGC	1 cut(s)	507
Kzo9I	GATC	8 cut(s)	172, 280, 368, 432, 447, 484, 604, 700
LmnI	GCTCC	1 cut(s)	642
LpnPI	CCDG	8 cut(s)	46, 57, 297, 351, 501, 689, 761, 831
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	1 cut(s)	594
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	3 cut(s)	166, 204, 900
MaeIII	GTNAC	2 cut(s)	205, 901
MalI	GATC	8 cut(s)	174, 282, 370, 434, 449, 486, 606, 702
MboI	GATC	8 cut(s)	172, 280, 368, 432, 447, 484, 604, 700
MflI	RGATCY	3 cut(s)	447, 484, 700
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	5 cut(s)	292, 304, 361, 826, 855
MluI	ACGCGT	1 cut(s)	762
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	77
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	2 cut(s)	513, 713
NdeII	GATC	8 cut(s)	172, 280, 368, 432, 447, 484, 604, 700
NlaIII	CATG	2 cut(s)	71, 791
NmuCI	GTSAC	1 cut(s)	901
PagI	TCATGA	2 cut(s)	67, 787
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 240, 437
PctI	GAATGC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	718
Psp124BI	GAGCTC	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	3 cut(s)	447, 484, 700
PvuII	CAGCTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	8 cut(s)	172, 280, 368, 432, 447, 484, 604, 700
SduI	GDGCHC	1 cut(s)	639
SetI	ASST	8 cut(s)	169, 207, 289, 330, 639, 657, 850, 903
SfaNI	GCATC	1 cut(s)	594
SfcI	CTRYAG	1 cut(s)	717
Sse9I	AATT	5 cut(s)	292, 304, 361, 826, 855
SsiI	CCGC	1 cut(s)	620
SspMI	CTAG	1 cut(s)	834
SstI	GAGCTC	1 cut(s)	639
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	4 cut(s)	31, 335, 558, 841
TaiI	ACGT	3 cut(s)	169, 207, 903
TaqI	TCGA	5 cut(s)	153, 162, 315, 426, 431
TasI	AATT	5 cut(s)	292, 304, 361, 826, 855
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	4 cut(s)	84, 264, 381, 517
TspGWI	ACGGA	2 cut(s)	249, 484
XapI	RAATTY	1 cut(s)	826
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.