Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013104

Physical Location & Seq

Genomic Coordinates Reverse (-)

66457856 .. 66458660

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGATGGGTCATCAGCAGACGTTCTGGTGCCACGAGTGCGACATGAGCGTGAGTCTGCCGACGACGACGACGACGACGACGAGTGTTGTCTGTCCTCACTGCTTCGGCGACCTCCTGGAGCTGATGGATTCGAGTGGCGACAATTTCCAAGCTCCAGAAGCATTCCGCCGCCCCCACGAGGACAACTACCGCCTCAACAGCCCAGTCCTCCAACGGCTGATCCACCGCCTCTCCGAGGACGACGTCGTCGTTCCGCCGCCCCCCGCCAATATCTACTTACTGCCGGCCTCCAAGGCGTACGTAGACGTCATCCCAACGGTGAGGATGACGTCACGTTCAATGTCGGTGTGCGCTGTTTGTAAGGAGCAATTTGCGGAGGATGCGGAGGCTAAGCAGCTGGCTTGCAGCCACGTGTACCATCCTGACTGCATTCTCCCTTGGCTTTCTTCCCGAAGTTCATGCCCCCTCTGCCGCTATCAGCTCCCCACCGACGACCACCGCACTCCTCCTCAACAGGACTCCCAACACCGAATTCAACGTCTTGTGCATTACCGACTTCAACTTCAACTTCAGCTCCAGCTCGACCGCTCATCCTTTAATGGAATGCTAAACAAATATACCCTTGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

211

Amino Acids

24.1

Weight (kDa)

6.03

Isoelectric Point (pI)

75.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 43	1.4e-10	zinc-ribbon
zf-rbx1	PF12678	114 - 159	1.7e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	118 - 159	3.7e-12	Ring finger domain
zf-C3HC4_2	PF13923	118 - 158	4.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	118 - 145	1.8e-06	RING-like zinc finger
zf-C3HC4	PF00097	118 - 158	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	118 - 156	9.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44330 AT3G60080
fragaria_vesca	FvH4_7g00020 FvH4_7g00020
malus_domestica	MD02G1319700.v1.1
prunus_persica	Prupe.2G002400_v2.0.a1 Prupe.8G211400_v2.0.a1
pyrus_communis	pycom02g26770
rosa_chinensis	RchiOBHm_Chr1g0313221
rosa_laevigata	RLG00000030812
rosa_multiflora	Rmu_sc0013586.1_g000001 Rmu_sc0027690.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332330
rosa_rugosa	RorugPtG0001800.1
rosa_samantha	Rh1AG001800 Rh1CG004000 Rh1DG001700
rosa_wichuraiana	Rw1G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AatII	GACGTC	3 cut(s)	249, 312, 335
AccB1I	GGYRCC	1 cut(s)	30
AccBSI	CCGCTC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	1 cut(s)	557
AcvI	CACGTG	1 cut(s)	415
AcyI	GRCGYC	3 cut(s)	246, 309, 332
AfaI	GTAC	2 cut(s)	302, 419
AfiI	CCNNNNNNNGG	2 cut(s)	181, 238
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	4 cut(s)	342, 539, 563, 569
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	6 cut(s)	124, 155, 400, 484, 577, 583
AluI	AGCT	6 cut(s)	124, 155, 400, 484, 577, 583
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	397, 408
ApoI	RAATTY	1 cut(s)	534
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
AspLEI	GCGC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	30
BauI	CACGAG	2 cut(s)	35, 179
BbrPI	CACGTG	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	409, 420
BccI	CCATC	2 cut(s)	121, 429
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	296
BisI	GCNGC	5 cut(s)	172, 260, 398, 409, 475
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	5 cut(s)	173, 261, 399, 410, 476
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	200
BpmI	CTGGAG	3 cut(s)	140, 141, 563
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaAI	YACGTR	2 cut(s)	304, 415
BsaHI	GRCGYC	3 cut(s)	246, 309, 332
BsaJI	CCNNGG	4 cut(s)	237, 294, 440, 625
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 561, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 238
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	4 cut(s)	237, 294, 440, 625
BseGI	GGATG	5 cut(s)	312, 333, 388, 421, 593
BseLI	CCNNNNNNNGG	2 cut(s)	181, 238
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	2 cut(s)	498, 501
BseXI	GCAGC	2 cut(s)	409, 420
Bsh1285I	CGRYCG	1 cut(s)	589
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	287
BsiWI	CGTACG	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	181, 238
BsmI	GAATGC	3 cut(s)	164, 432, 612
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	222
Bsp1720I	GCTNAGC	1 cut(s)	393
BspANI	GGCC	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	4 cut(s)	237, 294, 440, 625
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	3 cut(s)	246, 309, 332
BssSI	CACGAG	2 cut(s)	35, 179
BssT1I	CCWWGG	3 cut(s)	294, 440, 625
Bst2BI	CACGAG	2 cut(s)	35, 179
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	322
BstACI	GRCGYC	3 cut(s)	246, 309, 332
BstBAI	YACGTR	2 cut(s)	304, 415
BstC8I	GCNNGC	3 cut(s)	288, 402, 406
BstDEI	CTNAG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	5 cut(s)	312, 333, 388, 421, 593
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMCI	CGRYCG	1 cut(s)	589
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 48, 161, 201, 296, 383, 471
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSNI	TACGTA	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	409, 420
BsuRI	GGCC	1 cut(s)	290
BtsCI	GGATG	5 cut(s)	312, 333, 388, 421, 593
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	3 cut(s)	288, 402, 406
CfoI	GCGC	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	301, 418
CviAII	CATG	2 cut(s)	46, 462
CviQI	GTAC	2 cut(s)	301, 418
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EciI	GGCGGA	2 cut(s)	158, 246
Eco105I	TACGTA	1 cut(s)	304
Eco130I	CCWWGG	3 cut(s)	294, 440, 625
Eco57I	CTGAAG	1 cut(s)	557
Eco72I	CACGTG	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	3 cut(s)	294, 440, 625
ErhI	CCWWGG	3 cut(s)	294, 440, 625
FaeI	CATG	2 cut(s)	49, 465
FaiI	YATR	4 cut(s)	47, 463, 621, 634
FatI	CATG	2 cut(s)	45, 461
FauI	CCCGC	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	5 cut(s)	172, 260, 398, 409, 475
FokI	GGATG	5 cut(s)	299, 340, 395, 408, 580
Fsp4HI	GCNGC	5 cut(s)	172, 260, 398, 409, 475
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	5 cut(s)	172, 260, 398, 409, 475
GsuI	CTGGAG	3 cut(s)	140, 141, 563
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	3 cut(s)	246, 309, 332
Hin1II	CATG	2 cut(s)	49, 465
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HinfI	GANTC	3 cut(s)	55, 131, 521
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	307, 418
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	158, 425, 453
Hpy8I	GTNNAC	2 cut(s)	307, 418
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	8 cut(s)	23, 246, 303, 309, 332, 337, 414, 541
HpyCH4V	TGCA	3 cut(s)	408, 432, 550
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 48, 161, 201, 296, 383, 471
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	8 cut(s)	23, 246, 303, 309, 332, 337, 414, 541
Hsp92I	GRCGYC	3 cut(s)	246, 309, 332
Hsp92II	CATG	2 cut(s)	49, 465
HspAI	GCGC	1 cut(s)	354
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	5 cut(s)	121, 160, 367, 489, 582
Lsp1109I	GCAGC	2 cut(s)	409, 420
LweI	GCATC	1 cut(s)	373
MaeII	ACGT	8 cut(s)	23, 246, 303, 309, 332, 337, 414, 541
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	1 cut(s)	224
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	1 cut(s)	222
MboII	GAAGA	1 cut(s)	441
MluCI	AATT	3 cut(s)	145, 371, 534
MlyI	GAGTC	2 cut(s)	64, 515
MmeI	TCCRAC	1 cut(s)	238
MroNI	GCCGGC	1 cut(s)	286
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	3 cut(s)	164, 432, 612
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	7 cut(s)	39, 48, 161, 201, 296, 383, 471
NaeI	GCCGGC	1 cut(s)	288
NdeII	GATC	1 cut(s)	222
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	49, 465
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	5 cut(s)	71, 74, 77, 80, 249
PctI	GAATGC	3 cut(s)	164, 432, 612
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	131
Pfl23II	CGTACG	1 cut(s)	300
PflFI	GACNNNGTC	2 cut(s)	245, 248
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	173, 261, 399, 410, 476
PleI	GAGTC	2 cut(s)	63, 515
PmaCI	CACGTG	1 cut(s)	415
PmlI	CACGTG	1 cut(s)	415
PpsI	GAGTC	2 cut(s)	63, 515
Ppu21I	YACGTR	2 cut(s)	304, 415
Psp6I	CCWGG	1 cut(s)	117
PspCI	CACGTG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	117
PspLI	CGTACG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	32
PsyI	GACNNNGTC	2 cut(s)	245, 248
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	302, 419
RsaNI	GTAC	2 cut(s)	301, 418
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	5 cut(s)	172, 260, 398, 409, 475
Sau3AI	GATC	1 cut(s)	222
SchI	GAGTC	2 cut(s)	64, 515
ScrFI	CCNGG	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	50
SnaBI	TACGTA	1 cut(s)	304
Sse9I	AATT	3 cut(s)	145, 371, 534
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	3 cut(s)	294, 440, 625
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	8 cut(s)	26, 249, 306, 312, 335, 340, 417, 544
TaqI	TCGA	2 cut(s)	134, 585
TasI	AATT	3 cut(s)	145, 371, 534
TauI	GCSGC	3 cut(s)	174, 262, 477
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	2 cut(s)	397, 408
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	107
Tth111I	GACNNNGTC	2 cut(s)	245, 248
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	306
ZraI	GACGTC	3 cut(s)	247, 310, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.