Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013104

Physical Location & Seq

Genomic Coordinates Forward (+)

350155 .. 353028

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG001800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGATGGGTCATCAGCAGACGTTCTGGTGCCACGAGTGCGACATGAGCGTGAGTTTGCCGCCGCCGCCGACGACGACGAGTGTTGTCTGTCCTCACTGCTTCAGCGACCTCCTGGAGCTGATGGATTCCAGTGGCGACAATTTCCAAGCTCCAGAAGCATTCCGCCGCCCCCACGATCAGGACAACTACCGCCTCAACAGCCCAGTCCTCCAACGGCTGATCCACCGCCTCTCCGAGGACGACGTCGTCGTTCCGCCGCCCCCCGCCAATATCTACTTACTGCCGGCTTCCAAGGCGTACGTAGACGCCATCCCAACGGTGAGGATGACGTCACGTTCAATGTCGGTGTGCGCTGTTTGTAAGGAGCAATTTGCGGAGGACGCGGAGGCTAAGCAGCTGGCTTGCAACCACGTCTACCATCCTGACTGCATTCTCCCTTGGCTTTCTTCCCGAAGTTCGTGCCCCCTCTGCCGCTATCAGCTCCCCACCGACGACCACCACCACGCTCCTCCTCAACAAGACTCCCAACACCGAATTCAACGTCTCGTGCATTACCGACTTCAACTTCAACTTCAGCTCCAGCTCGACCGCTCATCCTTTAATGGAATGCTAAACAAATATACCCTTGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

212

Amino Acids

24.22

Weight (kDa)

6.02

Isoelectric Point (pI)

79.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	7 - 42	6.4e-11	zinc-ribbon
zf-rbx1	PF12678	114 - 159	8.8e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	118 - 159	3.4e-12	Ring finger domain
zf-C3HC4_2	PF13923	118 - 158	3.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	118 - 158	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	118 - 145	3.2e-06	RING-like zinc finger
zf-RING_UBOX	PF13445	118 - 156	9.3e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44330 AT3G60080
fragaria_vesca	FvH4_7g00020 FvH4_7g00020
malus_domestica	MD02G1319700.v1.1
prunus_persica	Prupe.2G002400_v2.0.a1 Prupe.8G211400_v2.0.a1
pyrus_communis	pycom02g26770
rosa_chinensis	RchiOBHm_Chr1g0313221
rosa_laevigata	RLG00000030812
rosa_multiflora	Rmu_sc0013586.1_g000001 Rmu_sc0027690.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332330
rosa_rugosa	RorugPtG0001800.1
rosa_samantha	Rh1AG001800 Rh1CG004000 Rh1DG001700
rosa_wichuraiana	Rw1G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AatII	GACGTC	2 cut(s)	249, 335
AccB1I	GGYRCC	1 cut(s)	30
AccBSI	CCGCTC	1 cut(s)	594
AccI	GTMKAC	2 cut(s)	306, 417
AccII	CGCG	1 cut(s)	386
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	2 cut(s)	88, 560
AcyI	GRCGYC	3 cut(s)	246, 309, 332
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	181, 238
AgsI	TTSAA	4 cut(s)	342, 542, 566, 572
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	6 cut(s)	121, 152, 400, 484, 580, 586
AluI	AGCT	6 cut(s)	121, 152, 400, 484, 580, 586
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	537
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AspLEI	GCGC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	334
BaeGI	GKGCMC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	30
BauI	CACGAG	2 cut(s)	35, 548
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	3 cut(s)	118, 320, 429
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	551
BisI	GCNGC	7 cut(s)	62, 65, 68, 169, 260, 398, 475
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	7 cut(s)	63, 66, 69, 170, 261, 399, 476
Bme1390I	CCNGG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	200
BpmI	CTGGAG	3 cut(s)	137, 138, 566
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	304
BsaHI	GRCGYC	3 cut(s)	246, 309, 332
BsaJI	CCNNGG	4 cut(s)	237, 294, 440, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 564, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 238
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	132, 206
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	4 cut(s)	237, 294, 440, 628
BseGI	GGATG	4 cut(s)	312, 333, 421, 596
BseLI	CCNNNNNNNGG	2 cut(s)	181, 238
BseNI	ACTGG	2 cut(s)	132, 206
BseRI	GAGGAG	2 cut(s)	501, 504
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	592
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	287
BsiWI	CGTACG	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	181, 238
BsmAI	GTCTC	1 cut(s)	551
BsmBI	CGTCTC	1 cut(s)	551
BsmI	GAATGC	3 cut(s)	161, 432, 615
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	178, 222
Bsp1720I	GCTNAGC	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	132, 206
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	4 cut(s)	237, 294, 440, 628
BssMI	GATC	2 cut(s)	178, 222
BssNI	GRCGYC	3 cut(s)	246, 309, 332
BssSI	CACGAG	2 cut(s)	35, 548
BssT1I	CCWWGG	3 cut(s)	294, 440, 628
Bst2BI	CACGAG	2 cut(s)	35, 548
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	322
BstACI	GRCGYC	3 cut(s)	246, 309, 332
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	3 cut(s)	288, 402, 406
BstDEI	CTNAG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	4 cut(s)	312, 333, 421, 596
BstFNI	CGCG	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	2 cut(s)	181, 225
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	2 cut(s)	178, 222
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 48, 67, 158, 201, 296, 383, 471
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	467
BstSNI	TACGTA	1 cut(s)	304
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	4 cut(s)	312, 333, 421, 596
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	97, 139
Cac8I	GCNNGC	3 cut(s)	288, 402, 406
CfoI	GCGC	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	286
CseI	GACGC	2 cut(s)	317, 392
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	1 cut(s)	46
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	180, 224
DpnII	GATC	2 cut(s)	178, 222
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EciI	GGCGGA	2 cut(s)	155, 246
Eco105I	TACGTA	1 cut(s)	304
Eco130I	CCWWGG	3 cut(s)	294, 440, 628
Eco57I	CTGAAG	2 cut(s)	88, 560
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	3 cut(s)	294, 440, 628
ErhI	CCWWGG	3 cut(s)	294, 440, 628
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	1 cut(s)	49
FaiI	YATR	3 cut(s)	47, 624, 637
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	306, 417
Fnu4HI	GCNGC	7 cut(s)	62, 65, 68, 169, 260, 398, 475
FokI	GGATG	4 cut(s)	299, 340, 408, 583
Fsp4HI	GCNGC	7 cut(s)	62, 65, 68, 169, 260, 398, 475
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	7 cut(s)	62, 65, 68, 169, 260, 398, 475
GsuI	CTGGAG	3 cut(s)	137, 138, 566
HapII	CCGG	1 cut(s)	287
HgaI	GACGC	2 cut(s)	317, 392
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	3 cut(s)	246, 309, 332
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HinfI	GANTC	2 cut(s)	128, 524
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	307, 418
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	4 cut(s)	155, 182, 425, 453
Hpy8I	GTNNAC	2 cut(s)	307, 418
Hpy99I	CGWCG	7 cut(s)	76, 79, 82, 248, 251, 254, 497
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	7 cut(s)	23, 246, 303, 332, 337, 414, 544
HpyCH4V	TGCA	3 cut(s)	408, 432, 553
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 48, 67, 158, 201, 296, 383, 471
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	7 cut(s)	23, 246, 303, 332, 337, 414, 544
Hsp92I	GRCGYC	3 cut(s)	246, 309, 332
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	354
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	178, 222
LmnI	GCTCC	6 cut(s)	118, 157, 367, 489, 514, 585
Lsp1109I	GCAGC	1 cut(s)	409
MaeII	ACGT	7 cut(s)	23, 246, 303, 332, 337, 414, 544
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	2 cut(s)	180, 224
MbiI	CCGCTC	1 cut(s)	594
MboI	GATC	2 cut(s)	178, 222
MboII	GAAGA	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	3 cut(s)	142, 371, 537
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	238
MroNI	GCCGGC	1 cut(s)	286
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	3 cut(s)	161, 432, 615
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	8 cut(s)	39, 48, 67, 158, 201, 296, 383, 471
NaeI	GCCGGC	1 cut(s)	288
NdeII	GATC	2 cut(s)	178, 222
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	3 cut(s)	161, 432, 615
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	128
Pfl23II	CGTACG	1 cut(s)	300
PflFI	GACNNNGTC	2 cut(s)	245, 248
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	7 cut(s)	63, 66, 69, 170, 261, 399, 476
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Ppu21I	YACGTR	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspLI	CGTACG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	32
PsyI	GACNNNGTC	2 cut(s)	245, 248
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	7 cut(s)	62, 65, 68, 169, 260, 398, 475
Sau3AI	GATC	2 cut(s)	178, 222
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	50
SnaBI	TACGTA	1 cut(s)	304
Sse9I	AATT	3 cut(s)	142, 371, 537
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	3 cut(s)	294, 440, 628
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	7 cut(s)	26, 249, 306, 335, 340, 417, 547
TaqI	TCGA	1 cut(s)	588
TasI	AATT	3 cut(s)	142, 371, 537
TauI	GCSGC	6 cut(s)	64, 67, 70, 171, 262, 477
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	104, 139
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	333
TspRI	CASTG	2 cut(s)	104, 139
Tth111I	GACNNNGTC	2 cut(s)	245, 248
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	537
XmiI	GTMKAC	2 cut(s)	306, 417
ZraI	GACGTC	2 cut(s)	247, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.