Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013104

Physical Location & Seq

Genomic Coordinates Forward (+)

317107 .. 320632

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G002400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGTGATCATCAGACGTTCTGGTGCCACGAATGCGACATGAGCGTGAGCCTGGTGCCTTGTTCTGCCCAGGAGACTCTGCTCTGCCCTCACTGCTTCAGCGATCTCTTGGAGCTCATGGATTCTTCGTCTTCTTCTTCTTCTTCTTTTTCTGACCATCAGCACAACTCACAAGACAACTTCTTGCTCAACAGCCCATTCCTCCACCGCCTCATCCACCACCTCTCCACCCACCCCATCAACCACGACGACCGCCTCCCTTCACCCACCGCCGCCGTCCCCCCTTCTTCTCTGCCTGCCTCCAAGGCCTCCGTCGACGCCATCCCTACTCTCAAGATCACCTCCTCCATGCTCGATCTCGACCCCCTTCTCCTCTGCGCCGTTTGTAAGGACCCATTCCTTCACTCCGTCGACGCCAAGCAGCTCCCTTGCAACCATCTCTACCATCCCCACTGCATTCTCCCCTGGCTCTCTTCCCACAGCTCTTGCCCCCTCTGCCGTTTCCAGCTCCCCACCGACACTCACCAACCACACCTACGACACCAAAACCAAAACACCCCCTTGCCCTTCGACGACGACGACGATCAGTACGATTGGTTCATGGAATATGGATCCCATGGGGGCAGTCTCCGCCTCAGCTACATTGCTGCCAGTGGAAGGCAAATGGCCAACCCAGGAGAAATGGCTGCCGCTGCCTCCCCCAATGTCAATGCCAATGCCAATGCCGACTCATCTTTCAACGGAAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

251

Amino Acids

27.53

Weight (kDa)

5.44

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44330 AT3G60080
fragaria_vesca	FvH4_7g00020 FvH4_7g00020
malus_domestica	MD02G1319700.v1.1
prunus_persica	Prupe.2G002400_v2.0.a1 Prupe.8G211400_v2.0.a1
pyrus_communis	pycom02g26770
rosa_chinensis	RchiOBHm_Chr1g0313221
rosa_laevigata	RLG00000030812
rosa_multiflora	Rmu_sc0013586.1_g000001 Rmu_sc0027690.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332330
rosa_rugosa	RorugPtG0001800.1
rosa_samantha	Rh1AG001800 Rh1CG004000 Rh1DG001700
rosa_wichuraiana	Rw1G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	24, 55
AccI	GTMKAC	2 cut(s)	315, 411
AciI	CCGC	6 cut(s)	208, 253, 270, 273, 631, 690
AclWI	GGATC	2 cut(s)	606, 619
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	745
AcuI	CTGAAG	1 cut(s)	82
AcyI	GRCGYC	2 cut(s)	318, 414
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	1 cut(s)	657
AgsI	TTSAA	1 cut(s)	739
AjnI	CCWGG	4 cut(s)	51, 69, 464, 673
AluBI	AGCT	5 cut(s)	115, 424, 483, 508, 639
AluI	AGCT	5 cut(s)	115, 424, 483, 508, 639
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	68, 632
AlwI	GGATC	2 cut(s)	606, 619
AoxI	GGCC	2 cut(s)	306, 666
ApeKI	GCWGC	4 cut(s)	421, 647, 686, 692
ApoI	RAATTY	1 cut(s)	745
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	4 cut(s)	17, 255, 331, 515
AvaII	GGWCC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	668
BamHI	GGATCC	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	24, 55
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	433, 634, 673, 679
BccI	CCATC	5 cut(s)	165, 245, 329, 444, 453
BceAI	ACGGC	3 cut(s)	260, 365, 483
BciT130I	CCWGG	4 cut(s)	53, 71, 466, 675
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	2 cut(s)	68, 632
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	6 cut(s)	273, 422, 648, 687, 690, 693
BlsI	GCNGC	6 cut(s)	274, 423, 649, 688, 691, 694
Bme1390I	CCNGG	4 cut(s)	53, 71, 466, 675
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	4 cut(s)	26, 57, 393, 613
BmrFI	CCNGG	4 cut(s)	53, 71, 466, 675
BpiI	GAAGAC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	318, 414
BsaJI	CCNNGG	5 cut(s)	69, 303, 464, 616, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	657
Bse1I	ACTGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	4 cut(s)	53, 71, 466, 675
BseDI	CCNNGG	5 cut(s)	69, 303, 464, 616, 673
BseGI	GGATG	3 cut(s)	213, 321, 445
BseLI	CCNNNNNNNGG	1 cut(s)	657
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	2 cut(s)	334, 362
BseXI	GCAGC	4 cut(s)	433, 634, 673, 679
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	308, 668
BshNI	GGYRCC	2 cut(s)	24, 55
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	657
BsmAI	GTCTC	2 cut(s)	68, 632
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	2 cut(s)	38, 456
BsnI	GGCC	2 cut(s)	308, 668
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	6 cut(s)	7, 103, 336, 355, 583, 611
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	6 cut(s)	208, 253, 270, 273, 631, 690
BspANI	GGCC	2 cut(s)	308, 668
BspCNI	CTCAG	1 cut(s)	648
BspLI	GGNNCC	4 cut(s)	26, 57, 393, 613
BspPI	GGATC	2 cut(s)	606, 619
BspT107I	GGYRCC	2 cut(s)	24, 55
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	5 cut(s)	69, 303, 464, 616, 673
BssMI	GATC	6 cut(s)	7, 103, 336, 355, 583, 611
BssNI	GRCGYC	2 cut(s)	318, 414
BssT1I	CCWWGG	2 cut(s)	303, 616
Bst2UI	CCWGG	4 cut(s)	53, 71, 466, 675
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	2 cut(s)	318, 414
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	3 cut(s)	213, 321, 445
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	6 cut(s)	10, 106, 339, 358, 586, 614
BstMAI	GTCTC	2 cut(s)	68, 632
BstMBI	GATC	6 cut(s)	7, 103, 336, 355, 583, 611
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 42, 93, 305, 495, 630, 692
BstNI	CCWGG	4 cut(s)	53, 71, 466, 675
BstSCI	CCNGG	4 cut(s)	51, 69, 464, 673
BstV1I	GCAGC	4 cut(s)	433, 634, 673, 679
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BsuRI	GGCC	2 cut(s)	308, 668
BtgI	CCRYGG	1 cut(s)	616
BtsCI	GGATG	3 cut(s)	213, 321, 445
BtsI	GCAGTG	2 cut(s)	91, 451
BtsIMutI	CAGTG	3 cut(s)	91, 451, 658
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	2 cut(s)	326, 422
Csp6I	GTAC	1 cut(s)	589
CspCI	CAANNNNNGTGG	2 cut(s)	467, 502
CviAII	CATG	5 cut(s)	40, 118, 349, 601, 617
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	6 cut(s)	9, 105, 338, 357, 585, 613
DpnII	GATC	6 cut(s)	7, 103, 336, 355, 583, 611
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
EciI	GGCGGA	1 cut(s)	620
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	303, 616
Eco147I	AGGCCT	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	4 cut(s)	51, 69, 464, 673
EcoT14I	CCWWGG	2 cut(s)	303, 616
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	303, 616
FaeI	CATG	5 cut(s)	43, 121, 352, 604, 620
FaiI	YATR	6 cut(s)	41, 119, 350, 602, 609, 618
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	5 cut(s)	39, 117, 348, 600, 616
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	2 cut(s)	315, 411
Fnu4HI	GCNGC	6 cut(s)	273, 422, 648, 687, 690, 693
FokI	GGATG	3 cut(s)	200, 308, 432
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	273, 422, 648, 687, 690, 693
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	6 cut(s)	273, 422, 648, 687, 690, 693
HaeIII	GGCC	2 cut(s)	308, 668
HgaI	GACGC	2 cut(s)	326, 422
HhaI	GCGC	1 cut(s)	380
Hin1I	GRCGYC	2 cut(s)	318, 414
Hin1II	CATG	5 cut(s)	43, 121, 352, 604, 620
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	2 cut(s)	316, 412
HindII	GTYRAC	2 cut(s)	316, 412
HinfI	GANTC	3 cut(s)	76, 122, 728
HphI	GGTGA	4 cut(s)	17, 255, 331, 515
Hpy166II	GTNNAC	2 cut(s)	316, 412
Hpy188I	TCNGA	2 cut(s)	15, 154
Hpy188III	TCNNGA	2 cut(s)	334, 359
Hpy8I	GTNNAC	2 cut(s)	316, 412
Hpy99I	CGWCG	9 cut(s)	251, 317, 320, 413, 416, 575, 578, 581, 584
HpyAV	CCTTC	6 cut(s)	270, 294, 377, 410, 577, 651
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	432, 456
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 42, 93, 305, 495, 630, 692
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	2 cut(s)	318, 414
Hsp92II	CATG	5 cut(s)	43, 121, 352, 604, 620
HspAI	GCGC	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 103, 336, 355, 583, 611
LmnI	GCTCC	3 cut(s)	112, 429, 513
Lsp1109I	GCAGC	4 cut(s)	433, 634, 673, 679
MaeII	ACGT	1 cut(s)	17
MalI	GATC	6 cut(s)	9, 105, 338, 357, 585, 613
MboI	GATC	6 cut(s)	7, 103, 336, 355, 583, 611
MboII	GAAGA	8 cut(s)	117, 123, 126, 129, 132, 135, 279, 465
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	1 cut(s)	745
MluNI	TGGCCA	1 cut(s)	668
MlyI	GAGTC	2 cut(s)	70, 722
Mox20I	TGGCCA	1 cut(s)	668
MscI	TGGCCA	1 cut(s)	668
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	692
MspR9I	CCNGG	4 cut(s)	53, 71, 466, 675
Mva1269I	GAATGC	2 cut(s)	38, 456
MvaI	CCWGG	4 cut(s)	53, 71, 466, 675
MwoI	GCNNNNNNNGC	7 cut(s)	33, 42, 93, 305, 495, 630, 692
NcoI	CCATGG	1 cut(s)	616
NdeII	GATC	6 cut(s)	7, 103, 336, 355, 583, 611
NlaIII	CATG	5 cut(s)	43, 121, 352, 604, 620
NlaIV	GGNNCC	4 cut(s)	26, 57, 393, 613
PceI	AGGCCT	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	3 cut(s)	576, 579, 588
PctI	GAATGC	2 cut(s)	38, 456
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	274, 423, 649, 688, 691, 694
PleI	GAGTC	2 cut(s)	70, 722
PpsI	GAGTC	2 cut(s)	70, 722
PpuMI	RGGWCCY	1 cut(s)	391
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	4 cut(s)	51, 69, 464, 673
PspGI	CCWGG	4 cut(s)	51, 69, 464, 673
PspN4I	GGNNCC	4 cut(s)	26, 57, 393, 613
PspPI	GGNCC	1 cut(s)	391
PspPPI	RGGWCCY	1 cut(s)	391
PsrI	GAACNNNNNNTAC	2 cut(s)	581, 613
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	117
SalI	GTCGAC	2 cut(s)	314, 410
SatI	GCNGC	6 cut(s)	273, 422, 648, 687, 690, 693
Sau3AI	GATC	6 cut(s)	7, 103, 336, 355, 583, 611
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	2 cut(s)	70, 722
ScrFI	CCNGG	4 cut(s)	53, 71, 466, 675
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	9 cut(s)	20, 117, 225, 344, 426, 485, 510, 537, 641
SgrDI	CGTCGACG	2 cut(s)	314, 410
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	745
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	6 cut(s)	208, 253, 270, 273, 631, 690
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	308
StyD4I	CCNGG	4 cut(s)	51, 69, 464, 673
StyI	CCWWGG	2 cut(s)	303, 616
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	5 cut(s)	315, 354, 360, 411, 570
TasI	AATT	1 cut(s)	745
TauI	GCSGC	2 cut(s)	275, 692
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	3 cut(s)	98, 458, 658
TseI	GCWGC	4 cut(s)	421, 647, 686, 692
TspDTI	ATGAA	1 cut(s)	589
TspGWI	ACGGA	2 cut(s)	301, 397
TspRI	CASTG	3 cut(s)	98, 458, 658
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	745
XmiI	GTMKAC	2 cut(s)	315, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.