Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013104

Physical Location & Seq

Genomic Coordinates Reverse (-)

24567443 .. 24570612

Gene Structure 3170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGCGTGAGCCTCCTGCCTTTGCCCGCTTCTTTTTCCCGGGAGAGGGAGAGGGAGAGGCAGAGGGACACTCTTCTCTGCCCTCACTGCTTCAGCGACCTCTTGGAGCTCATGGATTCTGATTCTCTTCAGCACGACTCCCTCATCCTCCAACCGCCACCACACCAGCCACATCCCCACAGCGATAACTACCTCCTCAACAGCCCATTCCTCCATCGACTCATCCACCACCTCTCCACCCACCCCATCAACCACGACGACCTCCTCCCTTCTGCCACCGCCTCTTCCTCCTCCGTTCCCTCTTCCTCCCTCCCTGCCTCCAAGGCGGCCGTCGACTCCATCCCCACCCTTAAGATCACCTCCTCCATGCTCGATCGTGACCCTCTTCTCCTCTGCGCCGTCTGCAAGGAGCAATTTCACCACTCCGTCGACGCCAAGCAGCTTCCTTGCAACCATCTGTACCACCCCCACTGCATTCTCCCATGGCTCTCTTCCCACAGCTCTTGCCCTCTCTGCCGCTTCCAGCTCCCCACCGAAACTCAGCACCACCAGCTTCAGCTTGGCCACCATACCCCCTTGCGCTTCAACTTCGACAATGACGACGACGAGGACCTCAACGATTGGTTTACGGAATATGGGTCCTCCTCCTCCTATGGAACCAGTCTCCGTCTCAACTACATTTCGGCCGGTGGAAGACACATGGCCAACCAAGCACATTTGGGTCCTGCTGCAGCCCCCAATTTCAATGCCAATGCCGATTCTTCTTTCAACGGGAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

261

Amino Acids

29.01

Weight (kDa)

5.93

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	132 - 173	3.9e-11	Ring finger domain
zf-C3HC4_2	PF13923	132 - 172	1.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	132 - 173	2.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44330 AT3G60080
fragaria_vesca	FvH4_7g00020 FvH4_7g00020
malus_domestica	MD02G1319700.v1.1
prunus_persica	Prupe.2G002400_v2.0.a1 Prupe.8G211400_v2.0.a1
pyrus_communis	pycom02g26770
rosa_chinensis	RchiOBHm_Chr1g0313221
rosa_laevigata	RLG00000030812
rosa_multiflora	Rmu_sc0013586.1_g000001 Rmu_sc0027690.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332330
rosa_rugosa	RorugPtG0001800.1
rosa_samantha	Rh1AG001800 Rh1CG004000 Rh1DG001700
rosa_wichuraiana	Rw1G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	333, 429
AciI	CCGC	5 cut(s)	27, 155, 279, 326, 517
AcoI	YGGCCR	4 cut(s)	327, 562, 684, 702
AcsI	RAATTY	1 cut(s)	775
AcuI	CTGAAG	3 cut(s)	76, 113, 539
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	45, 46
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	586, 745, 769
AluBI	AGCT	6 cut(s)	109, 442, 501, 526, 553, 559
AluI	AGCT	6 cut(s)	109, 442, 501, 526, 553, 559
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	668, 674
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	4 cut(s)	327, 562, 684, 702
ApeKI	GCWGC	3 cut(s)	439, 728, 731
ApoI	RAATTY	1 cut(s)	775
AspLEI	GCGC	2 cut(s)	398, 582
AspS9I	GGNCC	3 cut(s)	610, 639, 722
AsuC2I	CCSGG	2 cut(s)	40, 41
AsuHPI	GGTGA	2 cut(s)	349, 410
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	3 cut(s)	610, 639, 722
BalI	TGGCCA	2 cut(s)	564, 704
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	451, 715, 743
BccI	CCATC	4 cut(s)	222, 254, 347, 462
BceAI	ACGGC	2 cut(s)	314, 383
BcnI	CCSGG	2 cut(s)	40, 41
BcoDI	GTCTC	2 cut(s)	668, 674
BfmI	CTRYAG	1 cut(s)	729
BfrI	CTTAAG	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	5 cut(s)	327, 440, 517, 729, 732
BlsI	GCNGC	5 cut(s)	328, 441, 518, 730, 733
Bme1390I	CCNGG	2 cut(s)	40, 41
Bme18I	GGWCC	3 cut(s)	610, 639, 722
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	3 cut(s)	610, 639, 722
BmiI	GGNNCC	3 cut(s)	640, 658, 723
BmrFI	CCNGG	2 cut(s)	40, 41
BpiI	GAAGAC	1 cut(s)	700
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
BpuMI	CCSGG	2 cut(s)	40, 41
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	39, 321, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 46
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	1 cut(s)	660
BseDI	CCNNGG	3 cut(s)	39, 321, 482
BseGI	GGATG	4 cut(s)	144, 172, 222, 339
BseLI	CCNNNNNNNGG	2 cut(s)	45, 46
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	1 cut(s)	660
BseRI	GAGGAG	7 cut(s)	185, 254, 280, 352, 380, 634, 637
BseX3I	CGGCCG	2 cut(s)	327, 684
BseXI	GCAGC	3 cut(s)	451, 715, 743
Bsh1285I	CGRYCG	3 cut(s)	330, 376, 687
BshFI	GGCC	4 cut(s)	329, 564, 686, 704
BsiEI	CGRYCG	3 cut(s)	330, 376, 687
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	40, 687
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	45, 46
BsmAI	GTCTC	2 cut(s)	668, 674
BsmBI	CGTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	4 cut(s)	329, 564, 686, 704
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	354, 373
Bsp19I	CCATGG	1 cut(s)	482
BspACI	CCGC	5 cut(s)	27, 155, 279, 326, 517
BspANI	GGCC	4 cut(s)	329, 564, 686, 704
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	3 cut(s)	640, 658, 723
BspMAI	CTGCAG	1 cut(s)	733
BspTI	CTTAAG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	3 cut(s)	39, 321, 482
BssMI	GATC	2 cut(s)	354, 373
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	321, 482
Bst6I	CTCTTC	6 cut(s)	78, 132, 289, 307, 390, 496
BstACI	GRCGYC	1 cut(s)	432
BstAFI	CTTAAG	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	4 cut(s)	144, 172, 222, 339
BstHHI	GCGC	2 cut(s)	398, 582
BstKTI	GATC	2 cut(s)	357, 376
BstMAI	GTCTC	2 cut(s)	668, 674
BstMBI	GATC	2 cut(s)	354, 373
BstMCI	CGRYCG	3 cut(s)	330, 376, 687
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 323, 402, 513, 550, 710
BstSCI	CCNGG	2 cut(s)	38, 39
BstSFI	CTRYAG	1 cut(s)	729
BstV1I	GCAGC	3 cut(s)	451, 715, 743
BstV2I	GAAGAC	1 cut(s)	700
BstZI	CGGCCG	2 cut(s)	327, 684
BsuRI	GGCC	4 cut(s)	329, 564, 686, 704
BtgI	CCRYGG	1 cut(s)	482
BtsCI	GGATG	4 cut(s)	144, 172, 222, 339
BtsI	GCAGTG	2 cut(s)	85, 469
BtsIMutI	CAGTG	2 cut(s)	85, 469
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	2 cut(s)	398, 582
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	3 cut(s)	610, 639, 722
Cfr9I	CCCGGG	1 cut(s)	39
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	485, 520
CviAII	CATG	4 cut(s)	112, 367, 483, 700
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	2 cut(s)	356, 375
DpnII	GATC	2 cut(s)	354, 373
EaeI	YGGCCR	4 cut(s)	327, 562, 684, 702
EagI	CGGCCG	2 cut(s)	327, 684
Eam1104I	CTCTTC	6 cut(s)	78, 132, 289, 307, 390, 496
EarI	CTCTTC	6 cut(s)	78, 132, 289, 307, 390, 496
Ecl136II	GAGCTC	1 cut(s)	109
EclXI	CGGCCG	2 cut(s)	327, 684
Eco130I	CCWWGG	2 cut(s)	321, 482
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	3 cut(s)	610, 639, 722
Eco52I	CGGCCG	2 cut(s)	327, 684
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	3 cut(s)	76, 113, 539
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	3 cut(s)	610, 639, 722
EcoT14I	CCWWGG	2 cut(s)	321, 482
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	2 cut(s)	321, 482
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	4 cut(s)	115, 370, 486, 703
FaiI	YATR	8 cut(s)	113, 368, 484, 570, 636, 654, 701, 781
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	4 cut(s)	111, 366, 482, 699
FauI	CCCGC	1 cut(s)	34
FblI	GTMKAC	2 cut(s)	333, 429
Fnu4HI	GCNGC	5 cut(s)	327, 440, 517, 729, 732
FokI	GGATG	4 cut(s)	131, 159, 209, 326
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	5 cut(s)	327, 440, 517, 729, 732
GlaI	GCGC	2 cut(s)	397, 581
GluI	GCNGC	5 cut(s)	327, 440, 517, 729, 732
HaeIII	GGCC	4 cut(s)	329, 564, 686, 704
HapII	CCGG	2 cut(s)	40, 687
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	2 cut(s)	398, 582
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	115, 370, 486, 703
Hin6I	GCGC	2 cut(s)	396, 580
HinP1I	GCGC	2 cut(s)	396, 580
HincII	GTYRAC	2 cut(s)	334, 430
HindII	GTYRAC	2 cut(s)	334, 430
HinfI	GANTC	6 cut(s)	116, 122, 137, 219, 335, 758
HpaII	CCGG	2 cut(s)	40, 687
HphI	GGTGA	2 cut(s)	349, 410
Hpy166II	GTNNAC	3 cut(s)	334, 430, 627
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	3 cut(s)	334, 430, 627
Hpy99I	CGWCG	6 cut(s)	260, 335, 431, 434, 605, 608
HpyAV	CCTTC	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	405, 450, 474, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 323, 402, 513, 550, 710
HpyF3I	CTNAG	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	4 cut(s)	115, 370, 486, 703
HspAI	GCGC	2 cut(s)	396, 580
Kzo9I	GATC	2 cut(s)	354, 373
LmnI	GCTCC	3 cut(s)	106, 409, 531
LpnPI	CCDG	9 cut(s)	29, 53, 179, 327, 536, 563, 673, 700, 738
Lsp1109I	GCAGC	3 cut(s)	451, 715, 743
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	356, 375
MboI	GATC	2 cut(s)	354, 373
MboII	GAAGA	8 cut(s)	65, 119, 276, 294, 377, 483, 705, 753
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	2 cut(s)	564, 704
MluCI	AATT	3 cut(s)	413, 739, 775
MluNI	TGGCCA	2 cut(s)	564, 704
MlyI	GAGTC	3 cut(s)	131, 213, 329
MmeI	TCCRAC	1 cut(s)	175
Mox20I	TGGCCA	2 cut(s)	564, 704
MscI	TGGCCA	2 cut(s)	564, 704
MseI	TTAA	1 cut(s)	351
Msp20I	TGGCCA	2 cut(s)	564, 704
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	2 cut(s)	40, 687
MspR9I	CCNGG	2 cut(s)	40, 41
Mva1269I	GAATGC	1 cut(s)	474
MwoI	GCNNNNNNNGC	6 cut(s)	87, 323, 402, 513, 550, 710
NciI	CCSGG	2 cut(s)	40, 41
NcoI	CCATGG	1 cut(s)	482
NdeII	GATC	2 cut(s)	354, 373
NlaIII	CATG	4 cut(s)	115, 370, 486, 703
NlaIV	GGNNCC	3 cut(s)	640, 658, 723
NmuCI	GTSAC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	116, 122, 758
PkrI	GCNGC	5 cut(s)	328, 441, 518, 730, 733
Ple19I	CGATCG	1 cut(s)	376
PleI	GAGTC	3 cut(s)	131, 213, 329
PpsI	GAGTC	3 cut(s)	131, 213, 329
PpuMI	RGGWCCY	3 cut(s)	610, 639, 722
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	3 cut(s)	610, 639, 722
PspN4I	GGNNCC	3 cut(s)	640, 658, 723
PspPI	GGNCC	3 cut(s)	610, 639, 722
PspPPI	RGGWCCY	3 cut(s)	610, 639, 722
PstI	CTGCAG	1 cut(s)	733
PvuI	CGATCG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SacI	GAGCTC	1 cut(s)	111
SalI	GTCGAC	2 cut(s)	332, 428
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	5 cut(s)	327, 440, 517, 729, 732
Sau3AI	GATC	2 cut(s)	354, 373
Sau96I	GGNCC	3 cut(s)	610, 639, 722
SchI	GAGTC	3 cut(s)	131, 213, 329
ScrFI	CCNGG	2 cut(s)	40, 41
SduI	GDGCHC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	729
SgrDI	CGTCGACG	1 cut(s)	428
SinI	GGWCC	3 cut(s)	610, 639, 722
SmaI	CCCGGG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	413, 739, 775
SsiI	CCGC	5 cut(s)	27, 155, 279, 326, 517
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	38, 39
StyI	CCWWGG	2 cut(s)	321, 482
TaqI	TCGA	5 cut(s)	217, 333, 372, 429, 591
TasI	AATT	3 cut(s)	413, 739, 775
TauI	GCSGC	2 cut(s)	329, 519
TfiI	GAWTC	3 cut(s)	116, 122, 758
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	92, 476
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	3 cut(s)	439, 728, 731
Tsp45I	GTSAC	1 cut(s)	377
TspGWI	ACGGA	4 cut(s)	283, 415, 644, 656
TspMI	CCCGGG	1 cut(s)	39
TspRI	CASTG	2 cut(s)	92, 476
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	3 cut(s)	610, 639, 722
XapI	RAATTY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XmaI	CCCGGG	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	333, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.