AT2G44580

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006180
Physical Location & Seq
Reverse (-)
18401777 .. 18403654
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44580.2

Sequence Viewer

Length: 1161 bp
ATGGAAGAAATTGGAGGAGCTGAAGCAGTGATAAATCTCAAATCTGGATATTCGCTACCAATTTCTTATCACCCATGTTTTGGGCCTCACGAGGATCTACTTCTTCTTGAAGCTGATGACAAACTCGTCTCTGATATCTTTCATCAAAGGGTAACATTGAGAGGACTTCCTGATGAAGATGCTGTTCTTTGCACCAAGTCTAAGACTTATGCTATCAAATTTGTTGGTAATTCTAATTCCATGTTCCTTATTCCTCCTTCAATTTTTCCTGGAGATGCACAAGTTTCTGATACCAACAACAATGTATCGGTTCTCAAAATCGCTCCTGGTAATATGGAACTTGTTGAGGCTTCTCCTAGGCTTGATAAACTTAAGCAGATTCTCTTGGCAAATCCTTTTGGTGCTGGTGAAGTTGAAGCTATGATGGATGTTGATAATGATGACTTAGACCATAGTGGGAAGAAAGATCTAGCGTTGTACACTTGGAGCGATTTGGTTAACACGGTTCAAGCGAGTGATGAGGAGTTACGCAATGGCTTGCAGAGTCTTTCTGCTATTGAGATTGATGGTTTCTGGAGGGTTATAGATGAGAATTACCTAGACGTGATTCTGAGAATGCTTCTTCATAACTGTGTATTGAAAGATTGGTCATTTGATGATCTTGATGAAGATGAAGTTGTGAATGCTTTGGTAGCTGATGAGTTTCCTAGTCAACTAGCGAGTCACTGCTTGCGTGTGTTTGGCTCTAAAGTTAATGAAACTGATAAGTGGAAGTTGGAACCGAGGCTTGTGTGTTTGCACTTTGCTAGACAGATACTGAGAGAAGAAAAGATGAGACTAGAGAGTTTCATGGAAGAGTGGAAGAAGAAGATACCAGATGGGATGGAAGAAAGATTCGAGATGCTTGAAGGAGAGGTTTTAACAGAGAAAATCGGGATCGAGACACGGGTCTATACGTTTAGTGTGCGCTCTCTGCCTTCAACTCCAGAAGAAAGGTTTTCAGTACTCTTTAAACATAGATCAAAATGGGAATGGAAAGACTTAGAGCCTTACCTAAGGGATCTTCATGTTCCTAGACTATCTATGGAAGGGTTACTTCTGAAATACACACGCAGAGCACAACCTAAAGCTGATGCACCACCTGTCTTTAGTGCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dcc1

Protein Analysis

386

Amino Acids

44.06

Weight (kDa)

4.88

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dcc1 PF09724 34 - 352 1.1e-90 Sister chromatid cohesion protein Dcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 80
AclWI GGATC 3 cut(s) 102, 944, 1068
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 2 cut(s) 479, 1005
AfiI CCNNNNNNNGG 1 cut(s) 80
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 7 cut(s) 110, 261, 416, 509, 640, 908, 981
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 2 cut(s) 268, 325
AluBI AGCT 5 cut(s) 20, 113, 419, 695, 1130
AluI AGCT 5 cut(s) 20, 113, 419, 695, 1130
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 3 cut(s) 133, 829, 935
AlwI GGATC 3 cut(s) 102, 944, 1068
AlwNI CAGNNNCTG 1 cut(s) 817
AoxI GGCC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 218
AspA2I CCTAGG 1 cut(s) 356
AspLEI GCGC 1 cut(s) 969
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 62, 419
AvrII CCTAGG 1 cut(s) 356
AxyI CCTNAGG 1 cut(s) 1055
BauI CACGAG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 1120
BccI CCATC 4 cut(s) 418, 560, 872, 877
BciT130I CCWGG 2 cut(s) 270, 327
BcoDI GTCTC 3 cut(s) 133, 829, 935
BfaI CTAG 8 cut(s) 357, 470, 599, 708, 716, 807, 839, 1074
BfrI CTTAAG 1 cut(s) 371
BglII AGATCT 1 cut(s) 466
BlnI CCTAGG 1 cut(s) 356
BmcAI AGTACT 1 cut(s) 1005
Bme1390I CCNGG 2 cut(s) 270, 327
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 780
BmrFI CCNGG 2 cut(s) 270, 327
BmsI GCATC 4 cut(s) 169, 265, 891, 1123
BoxI GACNNNNGTC 1 cut(s) 947
BpmI CTGGAG 3 cut(s) 291, 595, 969
BsaJI CCNNGG 2 cut(s) 356, 782
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse21I CCTNAGG 1 cut(s) 1055
Bse3DI GCAATG 1 cut(s) 538
BseBI CCWGG 2 cut(s) 270, 327
BseDI CCNNGG 2 cut(s) 356, 782
BseGI GGATG 2 cut(s) 433, 888
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 2 cut(s) 602, 809
BseRI GAGGAG 2 cut(s) 30, 536
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 1120
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 3 cut(s) 133, 829, 935
BsmBI CGTCTC 1 cut(s) 133
BsmI GAATGC 2 cut(s) 621, 688
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 1120
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 6 cut(s) 94, 466, 658, 936, 1019, 1060
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 2 cut(s) 603, 810
BspLI GGNNCC 1 cut(s) 780
BspPI GGATC 3 cut(s) 102, 944, 1068
BspTI CTTAAG 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 538
BsrGI TGTACA 1 cut(s) 477
BssECI CCNNGG 2 cut(s) 356, 782
BssMI GATC 6 cut(s) 94, 466, 658, 936, 1019, 1060
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 2 cut(s) 270, 327
Bst4CI ACNGT 2 cut(s) 505, 632
Bst6I CTCTTC 1 cut(s) 849
BstAFI CTTAAG 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 539, 731
BstDEI CTNAG 6 cut(s) 201, 445, 611, 818, 1042, 1055
BstF5I GGATG 2 cut(s) 433, 888
BstHHI GCGC 1 cut(s) 969
BstKTI GATC 6 cut(s) 97, 469, 661, 939, 1022, 1063
BstMAI GTCTC 3 cut(s) 133, 829, 935
BstMBI GATC 6 cut(s) 94, 466, 658, 936, 1019, 1060
BstMWI GCNNNNNNNGC 2 cut(s) 692, 973
BstNI CCWGG 2 cut(s) 270, 327
BstPAI GACNNNNGTC 1 cut(s) 947
BstSCI CCNGG 2 cut(s) 268, 325
BstX2I RGATCY 3 cut(s) 94, 466, 1060
BstYI RGATCY 3 cut(s) 94, 466, 1060
Bsu36I CCTNAGG 1 cut(s) 1055
BsuRI GGCC 1 cut(s) 85
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 2 cut(s) 433, 888
BtsI GCAGTG 2 cut(s) 33, 724
BtsIMutI CAGTG 2 cut(s) 33, 724
Cac8I GCNNGC 2 cut(s) 539, 731
CaiI CAGNNNCTG 1 cut(s) 817
CfoI GCGC 1 cut(s) 969
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 478, 1004
CviAII CATG 4 cut(s) 75, 241, 850, 1067
CviQI GTAC 2 cut(s) 478, 1004
DdeI CTNAG 6 cut(s) 201, 445, 611, 818, 1042, 1055
DpnI GATC 6 cut(s) 96, 468, 660, 938, 1021, 1062
DpnII GATC 6 cut(s) 94, 466, 658, 936, 1019, 1060
DraI TTTAAA 1 cut(s) 1012
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
Eco130I CCWWGG 1 cut(s) 356
Eco32I GATATC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 42
Eco81I CCTNAGG 1 cut(s) 1055
EcoRII CCWGG 2 cut(s) 268, 325
EcoRV GATATC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 4 cut(s) 78, 244, 853, 1070
FalI AAGNNNNNCTT 2 cut(s) 1080, 1112
FatI CATG 4 cut(s) 74, 240, 849, 1066
FokI GGATG 2 cut(s) 440, 895
FspBI CTAG 8 cut(s) 357, 470, 599, 708, 716, 807, 839, 1074
GlaI GCGC 1 cut(s) 968
GsuI CTGGAG 3 cut(s) 291, 595, 969
HaeIII GGCC 1 cut(s) 85
HhaI GCGC 1 cut(s) 969
Hin1II CATG 4 cut(s) 78, 244, 853, 1070
Hin6I GCGC 1 cut(s) 967
HinP1I GCGC 1 cut(s) 967
HincII GTYRAC 2 cut(s) 499, 713
HindII GTYRAC 2 cut(s) 499, 713
HinfI GANTC 5 cut(s) 379, 544, 607, 721, 894
HpaI GTTAAC 1 cut(s) 499
HphI GGTGA 2 cut(s) 62, 419
Hpy166II GTNNAC 3 cut(s) 480, 499, 713
Hpy188I TCNGA 4 cut(s) 133, 289, 612, 1101
Hpy8I GTNNAC 3 cut(s) 480, 499, 713
HpyAV CCTTC 4 cut(s) 267, 902, 987, 1082
HpyCH4III ACNGT 2 cut(s) 505, 632
HpyCH4IV ACGT 2 cut(s) 603, 956
HpyCH4V TGCA 6 cut(s) 192, 278, 541, 799, 1136, 1154
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 973
HpyF3I CTNAG 6 cut(s) 201, 445, 611, 818, 1042, 1055
HpySE526I ACGT 2 cut(s) 603, 956
Hsp92II CATG 4 cut(s) 78, 244, 853, 1070
HspAI GCGC 1 cut(s) 967
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 6 cut(s) 94, 466, 658, 936, 1019, 1060
LmnI GCTCC 3 cut(s) 17, 328, 486
LweI GCATC 4 cut(s) 169, 265, 891, 1123
MaeI CTAG 8 cut(s) 357, 470, 599, 708, 716, 807, 839, 1074
MaeII ACGT 2 cut(s) 603, 956
MaeIII GTNAC 4 cut(s) 151, 525, 722, 1092
MalI GATC 6 cut(s) 96, 468, 660, 938, 1021, 1062
MboI GATC 6 cut(s) 94, 466, 658, 936, 1019, 1060
MflI RGATCY 3 cut(s) 94, 466, 1060
MhlI GDGCHC 1 cut(s) 1120
MluCI AATT 7 cut(s) 9, 60, 218, 229, 235, 261, 592
MlyI GAGTC 2 cut(s) 553, 730
MmeI TCCRAC 1 cut(s) 756
MseI TTAA 5 cut(s) 372, 498, 753, 920, 1011
MslI CAYNNNNRTG 1 cut(s) 630
MspCI CTTAAG 1 cut(s) 371
MspR9I CCNGG 2 cut(s) 270, 327
Mva1269I GAATGC 2 cut(s) 621, 688
MvaI CCWGG 2 cut(s) 270, 327
MwoI GCNNNNNNNGC 2 cut(s) 692, 973
NdeII GATC 6 cut(s) 94, 466, 658, 936, 1019, 1060
NlaIII CATG 4 cut(s) 78, 244, 853, 1070
NlaIV GGNNCC 1 cut(s) 780
NmuCI GTSAC 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 509
PctI GAATGC 2 cut(s) 621, 688
PfeI GAWTC 3 cut(s) 379, 607, 894
PflMI CCANNNNNTGG 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 268
PleI GAGTC 2 cut(s) 552, 729
PpsI GAGTC 2 cut(s) 552, 729
PshAI GACNNNNGTC 1 cut(s) 947
Psp6I CCWGG 2 cut(s) 268, 325
PspGI CCWGG 2 cut(s) 268, 325
PspN4I GGNNCC 1 cut(s) 780
PspPI GGNCC 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 817
PsuI RGATCY 3 cut(s) 94, 466, 1060
RsaI GTAC 2 cut(s) 479, 1005
RsaNI GTAC 2 cut(s) 478, 1004
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 5 cut(s) 372, 498, 753, 920, 1011
Sau3AI GATC 6 cut(s) 94, 466, 658, 936, 1019, 1060
Sau96I GGNCC 1 cut(s) 83
ScaI AGTACT 1 cut(s) 1005
SchI GAGTC 2 cut(s) 553, 730
ScrFI CCNGG 2 cut(s) 270, 327
SduI GDGCHC 1 cut(s) 1120
SfaNI GCATC 4 cut(s) 169, 265, 891, 1123
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 7 cut(s) 9, 60, 218, 229, 235, 261, 592
SspMI CTAG 8 cut(s) 357, 470, 599, 708, 716, 807, 839, 1074
StyD4I CCNGG 2 cut(s) 268, 325
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 505, 632
TaiI ACGT 2 cut(s) 606, 959
TaqI TCGA 2 cut(s) 897, 939
TasI AATT 7 cut(s) 9, 60, 218, 229, 235, 261, 592
TatI WGTACW 2 cut(s) 477, 1003
TfiI GAWTC 3 cut(s) 379, 607, 894
Tru1I TTAA 5 cut(s) 372, 498, 753, 920, 1011
Tru9I TTAA 5 cut(s) 372, 498, 753, 920, 1011
TscAI CASTG 2 cut(s) 33, 731
TseFI GTSAC 1 cut(s) 722
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 8 cut(s) 131, 189, 614, 681, 687, 771, 838, 1055
TspRI CASTG 2 cut(s) 33, 731
Van91I CCANNNNNTGG 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 371
XapI RAATTY 1 cut(s) 218
XmaJI CCTAGG 1 cut(s) 356
XspI CTAG 8 cut(s) 357, 470, 599, 708, 716, 807, 839, 1074
ZrmI AGTACT 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.