MD07G1086000.v1.1

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006180
Physical Location & Seq
Reverse (-)
8930930 .. 8933335
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1086000.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGGAGAAAAATATGGATCCACCATCTCCAGGCTGCATAGGTGCAGAAGCAGTACTAAGTCTCCAACCCAACTCAACAATTCCTATTACATATCACCCGCTCTTTGGTCCTCACGATGATCTGATCCTCCTTGAGGTTGATCAGAAACTTCTCCCTGATGTCCTCCACCAAAGAGTAACTGTTAGAGGACAGCCTGATGAAGATGCAGTCCTCTGCACGGAGTCAAAAACTTATGCAATGAAGTCCGTTGGAACTTCAAATTCTGTTTTTCTCATACCCCCATCAGGTCAATATAATACTTTTGAAAGCCCAGAGTGTTCCAATGAGAACTATCATGACCCACAATCTGTTGCTTCCATCATTAAGATTGCAACTGGTAACATGGAGCTTGTTGAAGTTGCTCCCCGACTTGACAAGCTAAGGTTGCTACTTTCCCAGAATCCTTACCGATCTGATGAGGACATAGAAATGGTGGATTTAGAGGAGATGGAGAGAACGAATGCTGGACTGTATAGATGGGATGATCTCATCGAGAAGGTTCAAGCTAGCGATTACGAATTAAGGATTGGATTGTGGGCTCTTTCAGCATTGGAGATAAATGGATATTGGAGAATTGTGGATGAGAAGTACATGAGCACAATTCTAAGGATGCTTTTGCACAATTCAGTGTTGAATGATTGGTCCTTGTCTTTGCTTAATCAAGATGATGTTGTTAATATGTTGGAATCAGATGGCTTTCCTCGCAAACTTGCAGACCACTGCTTGCATATTTTTGGTAATAAGGTGACTGAAGGTGCGATTACAGGTCGTATGTGGAAGTTGGACGAGAGAAAGGTATGTGTGCATTTTGCAAGAGAAATCTTGAGAGATGGTAAGAGGAAGATGAAGAAATTCATGGAGGAATGGGTTCGTAAGGTTCCCGAAGGGATGGCAGCCAGTTTTGACATATTGGAAGGTGAAGTTTTGATAGAGAAGCTTGGAGCTGAGACATGGATTCGAGCCTTCAGTGTTTCATCTCTACCCTACAATCCGGCAGAGCGATTCTCCATCCTTTTTAAGGAGCGTGCAAAATGGGAGTGGAAGGATTTACAGCCCTTTATCAGGGACTTGAATGTGCCGGGCCTTTCTGCGGAAGGTTTGCTTCTCAAATACACTAGAAGAACACAACCAACTGCTGATGCAGAACCGGTCTTCAGCGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dcc1

Protein Analysis

402

Amino Acids

45.79

Weight (kDa)

5.08

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dcc1 PF09724 42 - 367 1.4e-88 Sister chromatid cohesion protein Dcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 100
AciI CCGC 2 cut(s) 98, 1130
AclWI GGATC 3 cut(s) 11, 24, 118
AcsI RAATTY 2 cut(s) 259, 890
AcuI CTGAAG 3 cut(s) 810, 988, 1177
AfaI GTAC 2 cut(s) 54, 629
AfeI AGCGCT 1 cut(s) 1198
AfiI CCNNNNNNNGG 8 cut(s) 29, 104, 133, 217, 284, 1057, 1101, 1129
AgeI ACCGGT 1 cut(s) 1186
AgsI TTSAA 6 cut(s) 258, 305, 395, 542, 673, 1111
AjnI CCWGG 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 5 cut(s) 388, 418, 545, 976, 983
AluI AGCT 5 cut(s) 388, 418, 545, 976, 983
Alw21I GWGCWC 1 cut(s) 638
Alw26I GTCTC 2 cut(s) 65, 980
AlwI GGATC 3 cut(s) 11, 24, 118
Aor51HI AGCGCT 1 cut(s) 1198
AoxI GGCC 1 cut(s) 1120
ApeKI GCWGC 2 cut(s) 33, 932
ApoI RAATTY 2 cut(s) 259, 890
AsiGI ACCGGT 1 cut(s) 1186
Asp700I GAANNNNTTC 2 cut(s) 890, 906
AspLEI GCGC 1 cut(s) 1199
AspS9I GGNCC 3 cut(s) 107, 681, 1120
AsuC2I CCSGG 1 cut(s) 1119
AsuHPI GGTGA 3 cut(s) 86, 796, 968
AsuNHI GCTAGC 1 cut(s) 545
AvaII GGWCC 2 cut(s) 107, 681
BamHI GGATCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 1183
Bbv12I GWGCWC 1 cut(s) 638
BbvI GCAGC 2 cut(s) 20, 944
BccI CCATC 9 cut(s) 31, 289, 365, 481, 510, 725, 863, 922, 1055
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 1 cut(s) 1119
BcoDI GTCTC 2 cut(s) 65, 980
BfaI CTAG 3 cut(s) 546, 1155, 1200
BfoI RGCGCY 1 cut(s) 1200
BisI GCNGC 2 cut(s) 34, 933
BlsI GCNGC 2 cut(s) 35, 934
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 30, 1119
Bme18I GGWCC 2 cut(s) 107, 681
BmgT120I GGNCC 3 cut(s) 107, 681, 1120
BmiI GGNNCC 2 cut(s) 18, 918
BmrFI CCNGG 2 cut(s) 30, 1119
BmsI GCATC 3 cut(s) 193, 639, 1168
BmtI GCTAGC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 1183
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
BpmI CTGGAG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 419
BpuEI CTTGAG 2 cut(s) 152, 883
BpuMI CCSGG 1 cut(s) 1119
BsaWI WCCGGW 1 cut(s) 1186
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 8 cut(s) 29, 104, 133, 217, 284, 1057, 1101, 1129
Bse118I RCCGGY 1 cut(s) 1186
Bse1I ACTGG 2 cut(s) 379, 936
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 30
BseGI GGATG 5 cut(s) 526, 625, 654, 933, 1047
BseLI CCNNNNNNNGG 8 cut(s) 29, 104, 133, 217, 284, 1057, 1101, 1129
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 2 cut(s) 379, 936
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 2 cut(s) 20, 944
BsgI GTGCAG 2 cut(s) 63, 199
BshFI GGCC 1 cut(s) 1122
BshTI ACCGGT 1 cut(s) 1186
BsiHKAI GWGCWC 1 cut(s) 638
BsiSI CCGG 3 cut(s) 1031, 1118, 1187
BslFI GGGAC 1 cut(s) 1118
BslI CCNNNNNNNGG 8 cut(s) 29, 104, 133, 217, 284, 1057, 1101, 1129
BsmAI GTCTC 2 cut(s) 65, 980
BsmFI GGGAC 1 cut(s) 1118
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 1 cut(s) 1122
Bsp1286I GDGCHC 2 cut(s) 580, 638
Bsp143I GATC 6 cut(s) 16, 118, 123, 139, 449, 523
BspACI CCGC 2 cut(s) 98, 1130
BspANI GGCC 1 cut(s) 1122
BspCNI CTCAG 1 cut(s) 976
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 18, 918
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 3 cut(s) 11, 24, 118
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 1186
BsrI ACTGG 2 cut(s) 379, 936
BssAI RCCGGY 1 cut(s) 1186
BssMI GATC 6 cut(s) 16, 118, 123, 139, 449, 523
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 181, 510
BstC8I GCNNGC 3 cut(s) 547, 764, 1065
BstDEI CTNAG 4 cut(s) 56, 419, 644, 984
BstENI CCTNNNNNAGG 3 cut(s) 131, 1055, 1099
BstF5I GGATG 5 cut(s) 526, 625, 654, 933, 1047
BstH2I RGCGCY 1 cut(s) 1200
BstHHI GCGC 1 cut(s) 1199
BstKTI GATC 6 cut(s) 19, 121, 126, 142, 452, 526
BstMAI GTCTC 2 cut(s) 65, 980
BstMBI GATC 6 cut(s) 16, 118, 123, 139, 449, 523
BstMWI GCNNNNNNNGC 3 cut(s) 424, 584, 741
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 28, 1117
BstV1I GCAGC 2 cut(s) 20, 944
BstV2I GAAGAC 1 cut(s) 1183
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 1122
BtsCI GGATG 5 cut(s) 526, 625, 654, 933, 1047
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 3 cut(s) 672, 757, 1012
Cac8I GCNNGC 3 cut(s) 547, 764, 1065
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 1199
Cfr10I RCCGGY 1 cut(s) 1186
Cfr13I GGNCC 3 cut(s) 107, 681, 1120
Csp6I GTAC 2 cut(s) 53, 628
CspAI ACCGGT 1 cut(s) 1186
CviAII CATG 5 cut(s) 335, 382, 631, 895, 990
CviQI GTAC 2 cut(s) 53, 628
DdeI CTNAG 4 cut(s) 56, 419, 644, 984
DpnI GATC 6 cut(s) 18, 120, 125, 141, 451, 525
DpnII GATC 6 cut(s) 16, 118, 123, 139, 449, 523
Eco24I GRGCYC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 107, 681
Eco47III AGCGCT 1 cut(s) 1198
Eco57I CTGAAG 3 cut(s) 810, 988, 1177
EcoNI CCTNNNNNAGG 3 cut(s) 131, 1055, 1099
EcoRII CCWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 580
FaeI CATG 5 cut(s) 338, 385, 634, 898, 993
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FaqI GGGAC 1 cut(s) 1118
FatI CATG 5 cut(s) 334, 381, 630, 894, 989
FauI CCCGC 1 cut(s) 105
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 34, 933
FokI GGATG 5 cut(s) 533, 632, 661, 940, 1034
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 2 cut(s) 34, 933
FspBI CTAG 3 cut(s) 546, 1155, 1200
GlaI GCGC 1 cut(s) 1198
GluI GCNGC 2 cut(s) 34, 933
GsuI CTGGAG 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 1200
HaeIII GGCC 1 cut(s) 1122
HapII CCGG 3 cut(s) 1031, 1118, 1187
HhaI GCGC 1 cut(s) 1199
Hin1II CATG 5 cut(s) 338, 385, 634, 898, 993
Hin6I GCGC 1 cut(s) 1197
HinP1I GCGC 1 cut(s) 1197
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 5 cut(s) 221, 439, 725, 994, 1041
HpaII CCGG 3 cut(s) 1031, 1118, 1187
HphI GGTGA 3 cut(s) 86, 796, 968
Hpy188I TCNGA 4 cut(s) 123, 144, 454, 730
Hpy188III TCNNGA 6 cut(s) 113, 335, 532, 701, 862, 920
HpyAV CCTTC 7 cut(s) 529, 785, 917, 947, 1012, 1075, 1127
HpyCH4III ACNGT 2 cut(s) 181, 510
HpyF10VI GCNNNNNNNGC 3 cut(s) 424, 584, 741
HpyF3I CTNAG 4 cut(s) 56, 419, 644, 984
Hsp92II CATG 5 cut(s) 338, 385, 634, 898, 993
HspAI GCGC 1 cut(s) 1197
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 6 cut(s) 16, 118, 123, 139, 449, 523
LmnI GCTCC 4 cut(s) 385, 406, 980, 1060
Lsp1109I GCAGC 2 cut(s) 20, 944
LweI GCATC 3 cut(s) 193, 639, 1168
MaeI CTAG 3 cut(s) 546, 1155, 1200
MaeIII GTNAC 3 cut(s) 175, 377, 784
MalI GATC 6 cut(s) 18, 120, 125, 141, 451, 525
MbiI CCGCTC 1 cut(s) 100
MboI GATC 6 cut(s) 16, 118, 123, 139, 449, 523
MboII GAAGA 5 cut(s) 212, 892, 898, 1170, 1183
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 580, 638
MluCI AATT 7 cut(s) 78, 259, 557, 612, 639, 661, 890
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 4 cut(s) 88, 229, 702, 801
MroXI GAANNNNTTC 2 cut(s) 890, 906
MseI TTAA 5 cut(s) 363, 560, 696, 714, 1056
MslI CAYNNNNRTG 1 cut(s) 467
MspI CCGG 3 cut(s) 1031, 1118, 1187
MspR9I CCNGG 2 cut(s) 30, 1119
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 424, 584, 741
NciI CCSGG 1 cut(s) 1119
NdeII GATC 6 cut(s) 16, 118, 123, 139, 449, 523
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 5 cut(s) 338, 385, 634, 898, 993
NlaIV GGNNCC 2 cut(s) 18, 918
NmuCI GTSAC 1 cut(s) 784
PagI TCATGA 1 cut(s) 334
PctI GAATGC 1 cut(s) 505
PdmI GAANNNNTTC 2 cut(s) 890, 906
PfeI GAWTC 4 cut(s) 439, 725, 994, 1041
PinAI ACCGGT 1 cut(s) 1186
PkrI GCNGC 2 cut(s) 35, 934
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 18, 918
PspPI GGNCC 3 cut(s) 107, 681, 1120
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 54, 629
RsaNI GTAC 2 cut(s) 53, 628
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 5 cut(s) 363, 560, 696, 714, 1056
SatI GCNGC 2 cut(s) 34, 933
Sau3AI GATC 6 cut(s) 16, 118, 123, 139, 449, 523
Sau96I GGNCC 3 cut(s) 107, 681, 1120
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 30, 1119
SduI GDGCHC 2 cut(s) 580, 638
SfaNI GCATC 3 cut(s) 193, 639, 1168
SinI GGWCC 2 cut(s) 107, 681
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 131, 862
SmoI CTYRAG 2 cut(s) 131, 862
Sse9I AATT 7 cut(s) 78, 259, 557, 612, 639, 661, 890
SsiI CCGC 2 cut(s) 98, 1130
SspMI CTAG 3 cut(s) 546, 1155, 1200
StyD4I CCNGG 2 cut(s) 28, 1117
TaaI ACNGT 2 cut(s) 181, 510
TaqI TCGA 2 cut(s) 531, 997
TasI AATT 7 cut(s) 78, 259, 557, 612, 639, 661, 890
TatI WGTACW 2 cut(s) 52, 627
TfiI GAWTC 4 cut(s) 439, 725, 994, 1041
Tru1I TTAA 5 cut(s) 363, 560, 696, 714, 1056
Tru9I TTAA 5 cut(s) 363, 560, 696, 714, 1056
TscAI CASTG 3 cut(s) 672, 764, 1012
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 2 cut(s) 33, 932
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 5 cut(s) 213, 254, 883, 899, 1002
TspGWI ACGGA 2 cut(s) 233, 235
TspRI CASTG 3 cut(s) 672, 764, 1012
VpaK11BI GGWCC 2 cut(s) 107, 681
XagI CCTNNNNNAGG 3 cut(s) 131, 1055, 1099
XapI RAATTY 2 cut(s) 259, 890
XmnI GAANNNNTTC 2 cut(s) 890, 906
XspI CTAG 3 cut(s) 546, 1155, 1200
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.