Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006180

Physical Location & Seq

Genomic Coordinates Reverse (-)

17039404 .. 17042658

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G112300.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAACCACCATCTCCAGACTGCAACGGTGCAGAAGCGGTACTGAATCTCAAACCGAGCTCGTCAATTCCTATTACGTATCACCCTCTCTTTGGTCCTCACGATGATCTAATCCTCCTTGAGCTCGATCAGAAACTTCTCCCTGATGTCCTGCACCAAAGAGTAACTATTAGAGGACAGCCTGATGAAGATGCAGTCCTCTGCACGGAGTCAAAAACTTATGCAATCAAATCCGTTGGAACATCAAATTCGGTTTTCCTCATTCCCCCATCAAGTCAATTTAATTATTTTGAAAGCCCAATATGTTGTGATGAGAACTATCATGATCCACAATCTGTTGCTTCTGTCATTAAGATTGCAACCGGTAACATGGAACTTGTTGAAGTTGCCCCCAGACTTGACAAGCTAAGGTCGCTACTTTTTGAGAATCCTTACAGATTTGAGGAGGACGTAGAAATGGTGGACCTGGAAGAGATGGAAGGAAAGAATACAGGACTGTATAGCTGGGATGATCTTATTGAGAAAGTTCAAGCTAGTGATGATGAATTAAGGACTGGGTTGCAGGCTTTTTCGGCAGTGGAGATTTATGGATATTGGAGAATTGTGGATGAGAAGTACATGGACAGAATTCTTAGGATGCTTTTGCACAATTCAGTGCTGAATGATTGGTCATTGTCTTGTCTGAATGAAGACGATGTTGTCAATGCATTGGAATCAGATGGCTTTCCCCACAAACTTGCAAACCACTGCTTGCATGTTTATGGTAGCAAGGTGATTGAGGGTGTGAGCACAAGTAGTATATGGAAGTTGGATGAGAGGAAGGTATGTGTGCATTTTGCAAGAGACATCTTGAGAGACGGGAATAGGAAGATGGAGAGGTTCATGGAGGACTGGGCACGTAAGGTTCCCGAAGGGATGCCTGCAAGTTTAGACATGTTGGAAGGTGAAGTTTTGATAGAGAAGCTTGGCGCCGAGACATGGATTCGAGCCTTCAGTGTATCATCTCTACCTTACAACCCTGCAGAGCGATTCTCCGTCCTCTTTAAAGAGCGTCCAAAATGGGAGTGGAAGGATCTACATCCCTATATCAGTGACTTGAGAGTGCCGGGTCTTTCTGCCGAAGGTTTGCTTCTCAAATACACTAGAAGAACACAACCAACTGCTGATGCAGAACCCGTTTTCAGCATAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dcc1

Protein Analysis

398

Amino Acids

45.3

Weight (kDa)

4.84

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44580 AT2G44580
fragaria_vesca	FvH4_1g25731
malus_domestica	MD02G1227400.v1.1 MD07G1086000.v1.1
prunus_persica	Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1
pyrus_communis	pycom02g19620 pycom07g06900
rosa_chinensis	RchiOBHm_Chr1g0343251
rosa_laevigata	RLG00000028979 RLG00000028982
rosa_multiflora	Rmu_sc0005623.1_g000001
rosa_roxburghii	Rroxscaffold_4G00310840
rosa_rugosa	Rorug01G0166300
rosa_samantha	Rh1AG181700 Rh1BG149900 Rh1CG168500 Rh1DG181800
rosa_wichuraiana	Rw1G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	698
AccB1I	GGYRCC	1 cut(s)	968
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	2 cut(s)	320, 1080
AcsI	RAATTY	2 cut(s)	247, 627
AcuI	CTGAAG	1 cut(s)	976
AcyI	GRCGYC	1 cut(s)	969
AfaI	GTAC	2 cut(s)	42, 617
AfiI	CCNNNNNNNGG	3 cut(s)	92, 205, 978
AflIII	ACRYGT	1 cut(s)	933
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	293, 383, 530
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	6 cut(s)	60, 124, 406, 504, 533, 964
AluI	AGCT	6 cut(s)	60, 124, 406, 504, 533, 964
Alw21I	GWGCWC	3 cut(s)	62, 126, 791
Alw26I	GTCTC	3 cut(s)	837, 849, 968
AlwI	GGATC	2 cut(s)	320, 1080
ApoI	RAATTY	2 cut(s)	247, 627
AsiGI	ACCGGT	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	971
AspS9I	GGNCC	2 cut(s)	95, 463
AsuC2I	CCSGG	1 cut(s)	1107
AsuHPI	GGTGA	3 cut(s)	74, 784, 956
AvaII	GGWCC	2 cut(s)	95, 463
BaeGI	GKGCMC	1 cut(s)	898
BanI	GGYRCC	1 cut(s)	968
BanII	GRGCYC	2 cut(s)	62, 126
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	3 cut(s)	62, 126, 791
BccI	CCATC	5 cut(s)	19, 277, 469, 713, 865
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	1107
BcoDI	GTCTC	3 cut(s)	837, 849, 968
BfaI	CTAG	2 cut(s)	534, 1143
BfmI	CTRYAG	1 cut(s)	1020
BfoI	RGCGCY	1 cut(s)	972
Bme1390I	CCNGG	2 cut(s)	467, 1107
Bme18I	GGWCC	2 cut(s)	95, 463
BmgT120I	GGNCC	2 cut(s)	95, 463
BmiI	GGNNCC	3 cut(s)	6, 906, 970
BmrFI	CCNGG	2 cut(s)	467, 1107
BmrI	ACTGGG	2 cut(s)	564, 901
BmsI	GCATC	4 cut(s)	181, 627, 906, 1156
BmuI	ACTGGG	2 cut(s)	564, 901
BpiI	GAAGAC	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	1016, 1048
Bpu10I	CCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	3 cut(s)	140, 871, 1117
BpuMI	CCSGG	1 cut(s)	1107
BsaAI	YACGTR	2 cut(s)	78, 899
BsaBI	GATNNNNATC	1 cut(s)	1077
BsaHI	GRCGYC	1 cut(s)	969
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 205, 978
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	559, 896
Bse8I	GATNNNNATC	1 cut(s)	1077
BseBI	CCWGG	1 cut(s)	467
BseGI	GGATG	6 cut(s)	514, 613, 642, 817, 921, 1078
BseJI	GATNNNNATC	1 cut(s)	1077
BseLI	CCNNNNNNNGG	3 cut(s)	92, 205, 978
BseNI	ACTGG	2 cut(s)	559, 896
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	898
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	3 cut(s)	51, 137, 187
BshNI	GGYRCC	1 cut(s)	968
BshTI	ACCGGT	1 cut(s)	362
BsiHKAI	GWGCWC	3 cut(s)	62, 126, 791
BsiSI	CCGG	2 cut(s)	363, 1106
BslI	CCNNNNNNNGG	3 cut(s)	92, 205, 978
BsmAI	GTCTC	3 cut(s)	837, 849, 968
BsmBI	CGTCTC	1 cut(s)	849
Bsp1286I	GDGCHC	4 cut(s)	62, 126, 791, 898
Bsp143I	GATC	5 cut(s)	106, 127, 325, 511, 1072
BspACI	CCGC	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	6, 906, 970
BspMAI	CTGCAG	1 cut(s)	1024
BspPI	GGATC	2 cut(s)	320, 1080
BspT107I	GGYRCC	1 cut(s)	968
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	559, 896
BssAI	RCCGGY	1 cut(s)	362
BssMI	GATC	5 cut(s)	106, 127, 325, 511, 1072
BssNI	GRCGYC	1 cut(s)	969
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	29, 498
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	969
BstBAI	YACGTR	2 cut(s)	78, 899
BstC8I	GCNNGC	3 cut(s)	564, 752, 921
BstDEI	CTNAG	2 cut(s)	407, 632
BstF5I	GGATG	6 cut(s)	514, 613, 642, 817, 921, 1078
BstH2I	RGCGCY	1 cut(s)	972
BstHHI	GCGC	1 cut(s)	971
BstKTI	GATC	5 cut(s)	109, 130, 328, 514, 1075
BstMAI	GTCTC	3 cut(s)	837, 849, 968
BstMBI	GATC	5 cut(s)	106, 127, 325, 511, 1072
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 572
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	2 cut(s)	758, 937
BstSCI	CCNGG	2 cut(s)	465, 1105
BstSFI	CTRYAG	1 cut(s)	1020
BstSLI	GKGCMC	1 cut(s)	898
BstSNI	TACGTA	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	1072
BstYI	RGATCY	1 cut(s)	1072
BtsCI	GGATG	6 cut(s)	514, 613, 642, 817, 921, 1078
BtsI	GCAGTG	2 cut(s)	582, 745
BtsIMutI	CAGTG	5 cut(s)	582, 660, 745, 1000, 1096
Cac8I	GCNNGC	3 cut(s)	564, 752, 921
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	971
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	95, 463
CseI	GACGC	1 cut(s)	1040
Csp6I	GTAC	2 cut(s)	41, 616
CspAI	ACCGGT	1 cut(s)	362
CviAII	CATG	7 cut(s)	323, 370, 619, 755, 883, 934, 978
CviQI	GTAC	2 cut(s)	41, 616
DdeI	CTNAG	2 cut(s)	407, 632
DinI	GGCGCC	1 cut(s)	970
DpnI	GATC	5 cut(s)	108, 129, 327, 513, 1074
DpnII	GATC	5 cut(s)	106, 127, 325, 511, 1072
DraI	TTTAAA	1 cut(s)	1045
DrdI	GACNNNNNNGTC	1 cut(s)	698
DseDI	GACNNNNNNGTC	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Ecl136II	GAGCTC	2 cut(s)	60, 124
Eco105I	TACGTA	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	62, 126
Eco47I	GGWCC	2 cut(s)	95, 463
Eco53kI	GAGCTC	2 cut(s)	60, 124
Eco57I	CTGAAG	1 cut(s)	976
EcoICRI	GAGCTC	2 cut(s)	60, 124
EcoRI	GAATTC	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	2 cut(s)	62, 126
EgeI	GGCGCC	1 cut(s)	970
EheI	GGCGCC	1 cut(s)	970
Esp3I	CGTCTC	1 cut(s)	849
FaeI	CATG	7 cut(s)	326, 373, 622, 758, 886, 937, 981
FalI	AAGNNNNNCTT	2 cut(s)	1113, 1145
FatI	CATG	7 cut(s)	322, 369, 618, 754, 882, 933, 977
FokI	GGATG	6 cut(s)	521, 620, 649, 824, 928, 1065
FriOI	GRGCYC	2 cut(s)	62, 126
FspBI	CTAG	2 cut(s)	534, 1143
GlaI	GCGC	1 cut(s)	970
GsaI	CCCAGC	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	972
HapII	CCGG	2 cut(s)	363, 1106
HgaI	GACGC	1 cut(s)	1040
HhaI	GCGC	1 cut(s)	971
Hin1I	GRCGYC	1 cut(s)	969
Hin1II	CATG	7 cut(s)	326, 373, 622, 758, 886, 937, 981
Hin6I	GCGC	1 cut(s)	969
HinP1I	GCGC	1 cut(s)	969
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	6 cut(s)	46, 209, 427, 713, 982, 1029
HpaII	CCGG	2 cut(s)	363, 1106
HphI	GGTGA	3 cut(s)	74, 784, 956
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	132, 684, 718
Hpy188III	TCNNGA	5 cut(s)	17, 101, 323, 850, 908
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	7 cut(s)	473, 814, 905, 935, 1000, 1063, 1115
HpyCH4III	ACNGT	2 cut(s)	29, 498
HpyCH4IV	ACGT	3 cut(s)	77, 450, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 572
HpyF3I	CTNAG	2 cut(s)	407, 632
HpySE526I	ACGT	3 cut(s)	77, 450, 898
Hsp92I	GRCGYC	1 cut(s)	969
Hsp92II	CATG	7 cut(s)	326, 373, 622, 758, 886, 937, 981
HspAI	GCGC	1 cut(s)	969
KasI	GGCGCC	1 cut(s)	968
Kzo9I	GATC	5 cut(s)	106, 127, 325, 511, 1072
LweI	GCATC	4 cut(s)	181, 627, 906, 1156
MaeI	CTAG	2 cut(s)	534, 1143
MaeII	ACGT	3 cut(s)	77, 450, 898
MaeIII	GTNAC	3 cut(s)	163, 365, 1091
MalI	GATC	5 cut(s)	108, 129, 327, 513, 1074
MboI	GATC	5 cut(s)	106, 127, 325, 511, 1072
MboII	GAAGA	5 cut(s)	200, 482, 701, 880, 1158
MflI	RGATCY	1 cut(s)	1072
MhlI	GDGCHC	4 cut(s)	62, 126, 791, 898
MluCI	AATT	8 cut(s)	66, 247, 278, 283, 545, 600, 627, 649
Mly113I	GGCGCC	1 cut(s)	969
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	3 cut(s)	217, 789, 918
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	4 cut(s)	282, 351, 548, 1044
MslI	CAYNNNNRTG	1 cut(s)	759
MspI	CCGG	2 cut(s)	363, 1106
MspR9I	CCNGG	2 cut(s)	467, 1107
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	412, 572
NarI	GGCGCC	1 cut(s)	969
NciI	CCSGG	1 cut(s)	1107
NdeII	GATC	5 cut(s)	106, 127, 325, 511, 1072
NlaIII	CATG	7 cut(s)	326, 373, 622, 758, 886, 937, 981
NlaIV	GGNNCC	3 cut(s)	6, 906, 970
NmeAIII	GCCGAG	1 cut(s)	997
NmuCI	GTSAC	1 cut(s)	1091
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	2 cut(s)	758, 937
PagI	TCATGA	1 cut(s)	322
PciI	ACATGT	1 cut(s)	933
PfeI	GAWTC	5 cut(s)	46, 427, 713, 982, 1029
PinAI	ACCGGT	1 cut(s)	362
PleI	GAGTC	1 cut(s)	217
PluTI	GGCGCC	1 cut(s)	972
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	2 cut(s)	78, 899
PscI	ACATGT	1 cut(s)	933
Psp124BI	GAGCTC	2 cut(s)	62, 126
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	3 cut(s)	6, 906, 970
PspPI	GGNCC	2 cut(s)	95, 463
PstI	CTGCAG	1 cut(s)	1024
PsuI	RGATCY	1 cut(s)	1072
RsaI	GTAC	2 cut(s)	42, 617
RsaNI	GTAC	2 cut(s)	41, 616
RseI	CAYNNNNRTG	1 cut(s)	759
SacI	GAGCTC	2 cut(s)	62, 126
SaqAI	TTAA	4 cut(s)	282, 351, 548, 1044
Sau3AI	GATC	5 cut(s)	106, 127, 325, 511, 1072
Sau96I	GGNCC	2 cut(s)	95, 463
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	467, 1107
SduI	GDGCHC	4 cut(s)	62, 126, 791, 898
SfaNI	GCATC	4 cut(s)	181, 627, 906, 1156
SfcI	CTRYAG	1 cut(s)	1020
SfoI	GGCGCC	1 cut(s)	970
SinI	GGWCC	2 cut(s)	95, 463
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	3 cut(s)	119, 850, 1096
SmoI	CTYRAG	3 cut(s)	119, 850, 1096
SnaBI	TACGTA	1 cut(s)	78
Sse9I	AATT	8 cut(s)	66, 247, 278, 283, 545, 600, 627, 649
SsiI	CCGC	1 cut(s)	38
SspDI	GGCGCC	1 cut(s)	968
SspMI	CTAG	2 cut(s)	534, 1143
SstI	GAGCTC	2 cut(s)	62, 126
StyD4I	CCNGG	2 cut(s)	465, 1105
TaaI	ACNGT	2 cut(s)	29, 498
TaiI	ACGT	3 cut(s)	80, 453, 901
TaqI	TCGA	2 cut(s)	126, 985
TasI	AATT	8 cut(s)	66, 247, 278, 283, 545, 600, 627, 649
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	5 cut(s)	46, 427, 713, 982, 1029
Tru1I	TTAA	4 cut(s)	282, 351, 548, 1044
Tru9I	TTAA	4 cut(s)	282, 351, 548, 1044
TscAI	CASTG	5 cut(s)	582, 660, 752, 1000, 1096
TseFI	GTSAC	1 cut(s)	1091
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	4 cut(s)	201, 558, 702, 871
TspGWI	ACGGA	3 cut(s)	221, 223, 1024
TspRI	CASTG	5 cut(s)	582, 660, 752, 1000, 1096
VpaK11BI	GGWCC	2 cut(s)	95, 463
XapI	RAATTY	2 cut(s)	247, 627
XceI	RCATGY	2 cut(s)	758, 937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1062
XspI	CTAG	2 cut(s)	534, 1143
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.