Rh1DG181800

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006180
Physical Location & Seq
Reverse (-)
36620187 .. 36622992
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG181800.1

Sequence Viewer

Length: 1194 bp
ATGGAACCACCCTCTTCAGACTGTAGAGGTGCAGAAGCAGTACTAAATCTCCAACCCAGCTCGTCAATTCCTATTACATATCACCCTCTCTTTGGTCCTCACAATGATCTGATCCTCCTTGAACTTGATGAGAAACTCCTCCCTGATATCCTTCACCAAAGAGTGACTGTTAGAGGACAGCCTGATGAAGATGCAGTCATCTGCACGGAATCAAAGACTTACGCAATCAAGGCTGTTGGAACTTCGAATTCTGTTTTCCTCATACCCCCTTCTTGTCAATTTAATTCCTTTGAAGAACCAAAATGTTTTAATGAGAATTATCATGACCGGCAATCTGCTGCATCTGTCCTTAAGATTGCACCTGGTACCATGGAGCTTGTTGAAATTGCTCCAAGACTTGACAAGCTCAGGTTGCTACTTTCTGAGAATCCTTACAAAACTGAGGAGGACACTGAAATGGAAGAACTGGAAGGCATGGAAAGAGAGAATGTAGGACTGTATAGATGGGAAGATCTTATTGAGAAGGTTCAAGCAAGTAACGAGGAGTTAAGGAGTGCGTTACAGGCTCTTTCAGCTGTGGAGATTGATGGGTACTGGAGAATTGTGGATGAAAGGTACATGGATACGATGCTAAGGATACTTTTGCACAATGGAGTGTTGAATGACTGGTCATTTGCCTCACTTAATCAAGATGAGGTTGTTAATGTGCTGGTATCAGATGGCTTTCCTCGCAAACTTGCAAATCATTGCCTGCATGCCTTTGGTGGTAAGGTGGATAAAGGTGTGGGCACAAGTAATACATGGAAGTTGGATGAGAGGAAAGTGTGTGTGCACTTTGCAATAGAAATCTTGAGAGACGGGAAGAGGAAAATGGAGAGTTTCATGGAGGAGTGGATGCGAAAAATTCCTGAAGGGATGCAAGCAAGTTTTGACATGTTGGAAGGTGAAGTTTTGACGGAGAGGATTGGCATTGAGACATGGATTCGAGCCTTCCGTGTTTCATCACTACCTGGCAATCCTGCAGAGCGTTTCTCCATCCTGTTTAAAGAGCGTCCGAAATGGGAGTTGAAGGATCTACAGCCCTTCATCAGGGACTTGAATGTGCCCGGTCTTTCTGCAGAAGGTTTGCTTTTAAAGTACACGAGAAGATTACAACCAACTATGGACACAGAACCAGTTTTCAGCTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dcc1

Protein Analysis

397

Amino Acids

45.36

Weight (kDa)

4.99

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dcc1 PF09724 38 - 363 7.1e-92 Sister chromatid cohesion protein Dcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AclWI GGATC 2 cut(s) 106, 1080
AcsI RAATTY 2 cut(s) 247, 903
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 5 cut(s) 42, 367, 593, 617, 1139
AfiI CCNNNNNNNGG 2 cut(s) 92, 1089
AflII CTTAAG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 7 cut(s) 122, 293, 383, 530, 661, 1069, 1099
AjnI CCWGG 2 cut(s) 361, 1009
AluBI AGCT 5 cut(s) 60, 376, 406, 575, 1185
AluI AGCT 5 cut(s) 60, 376, 406, 575, 1185
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 2 cut(s) 849, 968
Alw44I GTGCAC 1 cut(s) 830
AlwI GGATC 2 cut(s) 106, 1080
ApaLI GTGCAC 1 cut(s) 830
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 247, 903
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
Asp718I GGTACC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 1 cut(s) 1107
AsuHPI GGTGA 3 cut(s) 74, 146, 956
AsuII TTCGAA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 3 cut(s) 791, 834, 1107
BanI GGYRCC 1 cut(s) 365
BauI CACGAG 1 cut(s) 1141
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 1 cut(s) 325
BccI CCATC 4 cut(s) 498, 581, 713, 1043
BciT130I CCWGG 2 cut(s) 363, 1011
BciVI GTATCC 2 cut(s) 616, 630
BcnI CCSGG 1 cut(s) 1107
BcoDI GTCTC 2 cut(s) 849, 968
BfmI CTRYAG 4 cut(s) 22, 1020, 1076, 1116
BfrI CTTAAG 1 cut(s) 350
BfuI GTATCC 2 cut(s) 616, 630
BglII AGATCT 1 cut(s) 511
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 3 cut(s) 363, 1011, 1107
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 6, 367
BmrFI CCNGG 3 cut(s) 363, 1011, 1107
BmsI GCATC 5 cut(s) 181, 350, 618, 885, 906
BplI GAGNNNNNCTC 2 cut(s) 1016, 1048
BpmI CTGGAG 1 cut(s) 616
Bpu10I CCTNAGC 2 cut(s) 407, 632
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 2 cut(s) 871, 1171
BpuMI CCSGG 1 cut(s) 1107
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 1089
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 4 cut(s) 471, 599, 671, 1175
Bse3DI GCAATG 1 cut(s) 745
BseBI CCWGG 2 cut(s) 363, 1011
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 5 cut(s) 613, 817, 900, 921, 1035
BseLI CCNNNNNNNGG 2 cut(s) 92, 1089
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 3 cut(s) 414, 421, 432
BseNI ACTGG 4 cut(s) 471, 599, 671, 1175
BseRI GAGGAG 4 cut(s) 128, 458, 557, 902
BseSI GKGCMC 3 cut(s) 791, 834, 1107
BseXI GCAGC 1 cut(s) 325
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 2 cut(s) 51, 187
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 834
BsiSI CCGG 2 cut(s) 328, 1107
BslFI GGGAC 1 cut(s) 1106
BslI CCNNNNNNNGG 2 cut(s) 92, 1089
BsmAI GTCTC 2 cut(s) 849, 968
BsmBI CGTCTC 1 cut(s) 849
BsmFI GGGAC 1 cut(s) 1106
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 791, 834, 1107
Bsp143I GATC 4 cut(s) 106, 111, 511, 1072
Bsp19I CCATGG 1 cut(s) 369
BspCNI CTCAG 3 cut(s) 415, 420, 433
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 6, 367
BspMAI CTGCAG 2 cut(s) 1024, 1120
BspPI GGATC 2 cut(s) 106, 1080
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 365
BspTI CTTAAG 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 4 cut(s) 471, 599, 671, 1175
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 4 cut(s) 106, 111, 511, 1072
BssSI CACGAG 1 cut(s) 1141
BssT1I CCWWGG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 1141
Bst2UI CCWGG 2 cut(s) 363, 1011
Bst4CI ACNGT 3 cut(s) 23, 169, 498
Bst6I CTCTTC 2 cut(s) 19, 857
BstAFI CTTAAG 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 752, 756, 921
BstDEI CTNAG 4 cut(s) 407, 423, 441, 632
BstDSI CCRYGG 1 cut(s) 369
BstENI CCTNNNNNAGG 1 cut(s) 1087
BstF5I GGATG 5 cut(s) 613, 817, 900, 921, 1035
BstKTI GATC 4 cut(s) 109, 114, 514, 1075
BstMAI GTCTC 2 cut(s) 849, 968
BstMBI GATC 4 cut(s) 106, 111, 511, 1072
BstMWI GCNNNNNNNGC 5 cut(s) 230, 412, 563, 572, 729
BstNI CCWGG 2 cut(s) 363, 1011
BstNSI RCATGY 2 cut(s) 758, 937
BstSCI CCNGG 3 cut(s) 361, 1009, 1105
BstSFI CTRYAG 4 cut(s) 22, 1020, 1076, 1116
BstSLI GKGCMC 3 cut(s) 791, 834, 1107
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 2 cut(s) 511, 1072
BstYI RGATCY 2 cut(s) 511, 1072
BsuI GTATCC 2 cut(s) 616, 630
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 5 cut(s) 613, 817, 900, 921, 1035
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 3 cut(s) 752, 756, 921
CciI TCATGA 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 1040
CsiI ACCWGGT 1 cut(s) 361
Csp6I GTAC 5 cut(s) 41, 366, 592, 616, 1138
CviAII CATG 9 cut(s) 323, 370, 475, 619, 755, 801, 883, 934, 978
CviQI GTAC 5 cut(s) 41, 366, 592, 616, 1138
DdeI CTNAG 4 cut(s) 407, 423, 441, 632
DpnI GATC 4 cut(s) 108, 113, 513, 1074
DpnII GATC 4 cut(s) 106, 111, 511, 1072
DraI TTTAAA 2 cut(s) 1045, 1134
Eam1104I CTCTTC 2 cut(s) 19, 857
EarI CTCTTC 2 cut(s) 19, 857
Eco130I CCWWGG 1 cut(s) 369
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 930
EcoNI CCTNNNNNAGG 1 cut(s) 1087
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 361, 1009
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 849
FaeI CATG 9 cut(s) 326, 373, 478, 622, 758, 804, 886, 937, 981
FalI AAGNNNNNCTT 2 cut(s) 1113, 1145
FaqI GGGAC 1 cut(s) 1106
FatI CATG 9 cut(s) 322, 369, 474, 618, 754, 800, 882, 933, 977
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 5 cut(s) 620, 824, 907, 928, 1022
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 616
HapII CCGG 2 cut(s) 328, 1107
HgaI GACGC 1 cut(s) 1040
Hin1II CATG 9 cut(s) 326, 373, 478, 622, 758, 804, 886, 937, 981
HinfI GANTC 3 cut(s) 209, 427, 982
HpaII CCGG 2 cut(s) 328, 1107
HphI GGTGA 3 cut(s) 74, 146, 956
Hpy166II GTNNAC 2 cut(s) 832, 1140
Hpy188I TCNGA 5 cut(s) 19, 111, 424, 718, 1056
Hpy188III TCNNGA 5 cut(s) 323, 689, 850, 908, 1188
Hpy8I GTNNAC 2 cut(s) 832, 1140
HpyCH4III ACNGT 3 cut(s) 23, 169, 498
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 412, 563, 572, 729
HpyF3I CTNAG 4 cut(s) 407, 423, 441, 632
Hsp92II CATG 9 cut(s) 326, 373, 478, 622, 758, 804, 886, 937, 981
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 4 cut(s) 106, 111, 511, 1072
LmnI GCTCC 2 cut(s) 373, 394
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 5 cut(s) 181, 350, 618, 885, 906
MabI ACCWGGT 1 cut(s) 361
MaeIII GTNAC 3 cut(s) 163, 536, 558
MalI GATC 4 cut(s) 108, 113, 513, 1074
MboI GATC 4 cut(s) 106, 111, 511, 1072
MboII GAAGA 7 cut(s) 6, 200, 305, 473, 521, 874, 1158
MflI RGATCY 2 cut(s) 511, 1072
MhlI GDGCHC 3 cut(s) 791, 834, 1107
MluCI AATT 8 cut(s) 66, 247, 278, 283, 316, 384, 600, 903
MmeI TCCRAC 4 cut(s) 76, 217, 789, 918
MseI TTAA 8 cut(s) 282, 309, 351, 548, 684, 702, 1044, 1133
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 575
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 2 cut(s) 328, 1107
MspR9I CCNGG 3 cut(s) 363, 1011, 1107
MvaI CCWGG 2 cut(s) 363, 1011
MwoI GCNNNNNNNGC 5 cut(s) 230, 412, 563, 572, 729
NciI CCSGG 1 cut(s) 1107
NcoI CCATGG 1 cut(s) 369
NdeII GATC 4 cut(s) 106, 111, 511, 1072
NlaIII CATG 9 cut(s) 326, 373, 478, 622, 758, 804, 886, 937, 981
NlaIV GGNNCC 2 cut(s) 6, 367
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 2 cut(s) 758, 937
NspV TTCGAA 1 cut(s) 245
PaeI GCATGC 1 cut(s) 758
PagI TCATGA 1 cut(s) 322
PciI ACATGT 1 cut(s) 933
PcsI WCGNNNNNNNCGW 1 cut(s) 991
PfeI GAWTC 3 cut(s) 209, 427, 982
PkrI GCNGC 1 cut(s) 340
PscI ACATGT 1 cut(s) 933
Psp6I CCWGG 2 cut(s) 361, 1009
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 2 cut(s) 361, 1009
PspN4I GGNNCC 2 cut(s) 6, 367
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 2 cut(s) 1024, 1120
PsuI RGATCY 2 cut(s) 511, 1072
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 5 cut(s) 42, 367, 593, 617, 1139
RsaNI GTAC 5 cut(s) 41, 366, 592, 616, 1138
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 8 cut(s) 282, 309, 351, 548, 684, 702, 1044, 1133
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 4 cut(s) 106, 111, 511, 1072
Sau96I GGNCC 1 cut(s) 95
ScaI AGTACT 1 cut(s) 42
ScrFI CCNGG 3 cut(s) 363, 1011, 1107
SduI GDGCHC 3 cut(s) 791, 834, 1107
SexAI ACCWGGT 1 cut(s) 361
SfaNI GCATC 5 cut(s) 181, 350, 618, 885, 906
SfcI CTRYAG 4 cut(s) 22, 1020, 1076, 1116
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 3 cut(s) 350, 850, 1186
SmoI CTYRAG 3 cut(s) 350, 850, 1186
SphI GCATGC 1 cut(s) 758
Sse9I AATT 8 cut(s) 66, 247, 278, 283, 316, 384, 600, 903
StyD4I CCNGG 3 cut(s) 361, 1009, 1105
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 3 cut(s) 23, 169, 498
TaqI TCGA 2 cut(s) 245, 985
TasI AATT 8 cut(s) 66, 247, 278, 283, 316, 384, 600, 903
TatI WGTACW 2 cut(s) 40, 1137
TfiI GAWTC 3 cut(s) 209, 427, 982
Tru1I TTAA 8 cut(s) 282, 309, 351, 548, 684, 702, 1044, 1133
Tru9I TTAA 8 cut(s) 282, 309, 351, 548, 684, 702, 1044, 1133
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 5 cut(s) 201, 624, 871, 990, 1075
TspGWI ACGGA 3 cut(s) 221, 971, 983
TspRI CASTG 1 cut(s) 457
Vha464I CTTAAG 1 cut(s) 350
VneI GTGCAC 1 cut(s) 830
VpaK11BI GGWCC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 1087
XapI RAATTY 2 cut(s) 247, 903
XceI RCATGY 2 cut(s) 758, 937
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.