Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006180

Physical Location & Seq

Genomic Coordinates Reverse (-)

6176391 .. 6177815

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAGAAAAATATGGATCCACCATCTCCAGGCTGCACAGGTGCAGAAGCAGTACTAAGTCTCCAACCCAACTCATCAATTCCTATTACATATCACCCGCTCTTTGGACCTCACGATGATCTGATCCTCCTCGAGGTTGATCAGAAACTTCTCCCTGATGTCCTCCACCAAAGAGTAACTGTTAGAGGACAGCCTGATGAAGATGCAGTCCTCTGCACGGAGTCAAAAACTTATGCAATGAAGTCCGTTGGAACTTCAAATTCTGTTTTTCTCATACCCCCATCAGGTCAATATAATACGTTTGAAAGCCCAAAGTGTTCCAGTGAGAACTATCATGACCCACTATCTGTTGCTTCCGTCATTAAGATTGCAACTGGTAACATGGAGCTTGTTGAAGTTGCTCCCCGACTTGACAAGCTAAGGTTGCTACTTTCCCAGAATCCTTACCGATCTGATGAGGACATAGAAATGGTGGATTTAGAGGAGATGGAGAGAACGAATGCTGGGCTGTATAGATGGAATGATCTCATTGAGAAGGTTCAAGCTAGCGATTACGAATTAAGGATTGGATTGCGGGCTCTGTCAGCAGTGGAGATAAATGGATATTGGAGAATTGTCGATGAGAAGTACATGGGCACAATTCTAAGGATGCTTTTGCACAATTCAGTGTTGAATGATTGGTCCATGTCTTTGCTTAATCAAGATGATGTTGTTAATATGTTGGAATCAGATGGCTTTCCTCGCAAACTTGCAGACCACTGCTTGCATATTTTTGGTAATAAGATGACTGAAGGTGCGATTACAAGTCGTATGTGGAAGTTGGATGAGAGAAAGGTATGTGTGCATTTTGCAAGAGAAATCTTGAGAGATGGGAAGAGGAAGATGAAGAAGTTCATGGAGGAATGGGTTCGTAAGGTTCCCGAAGGGATGGCAGCCAGTTTTGACATATTGGAAGGTGAAGTTTTGATAGAGAAGCTTGGAGCTGAGACATGGATTCGAGCCTTCAGTGTTTCATCTCTACCCTACAATCCTGCAGAGCGATTCTCCATCCTTTTTAAGGAGCGTGCAAAATGGGAGTGGAAGGATCTACAGCCCTTTATCAGGGACTTGAATGTGCCGGGCCTTTCTGCGGAAGGTTTGCTTCTCAAATACACTAGAAGAACACAACCAACTGCTGATGCAGAACCAGTCTTCAGCGCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dcc1

Protein Analysis

402

Amino Acids

45.71

Weight (kDa)

5.31

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44580 AT2G44580
fragaria_vesca	FvH4_1g25731
malus_domestica	MD02G1227400.v1.1 MD07G1086000.v1.1
prunus_persica	Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1
pyrus_communis	pycom02g19620 pycom07g06900
rosa_chinensis	RchiOBHm_Chr1g0343251
rosa_laevigata	RLG00000028979 RLG00000028982
rosa_multiflora	Rmu_sc0005623.1_g000001
rosa_roxburghii	Rroxscaffold_4G00310840
rosa_rugosa	Rorug01G0166300
rosa_samantha	Rh1AG181700 Rh1BG149900 Rh1CG168500 Rh1DG181800
rosa_wichuraiana	Rw1G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	100
AccII	CGCG	1 cut(s)	1199
AciI	CCGC	3 cut(s)	98, 574, 1130
AclWI	GGATC	4 cut(s)	11, 24, 118, 1092
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	3 cut(s)	810, 988, 1177
AfaI	GTAC	2 cut(s)	54, 629
AfiI	CCNNNNNNNGG	8 cut(s)	29, 104, 133, 217, 284, 1057, 1101, 1129
AgsI	TTSAA	6 cut(s)	258, 305, 395, 542, 673, 1111
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	5 cut(s)	388, 418, 545, 976, 983
AluI	AGCT	5 cut(s)	388, 418, 545, 976, 983
Alw26I	GTCTC	2 cut(s)	65, 980
AlwI	GGATC	4 cut(s)	11, 24, 118, 1092
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	1120
ApeKI	GCWGC	2 cut(s)	33, 932
ApoI	RAATTY	1 cut(s)	259
Asp700I	GAANNNNTTC	2 cut(s)	890, 906
AspLEI	GCGC	1 cut(s)	1199
AspS9I	GGNCC	3 cut(s)	107, 681, 1120
AsuC2I	CCSGG	1 cut(s)	1119
AsuHPI	GGTGA	2 cut(s)	86, 968
AsuNHI	GCTAGC	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	107, 681
BaeGI	GKGCMC	1 cut(s)	638
BamHI	GGATCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	1183
BbvI	GCAGC	2 cut(s)	20, 944
BccI	CCATC	8 cut(s)	31, 289, 481, 510, 725, 863, 922, 1055
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	1119
BcoDI	GTCTC	2 cut(s)	65, 980
BfaI	CTAG	2 cut(s)	546, 1155
BfmI	CTRYAG	2 cut(s)	1032, 1088
BisI	GCNGC	2 cut(s)	34, 933
BlsI	GCNGC	2 cut(s)	35, 934
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	30, 1119
Bme18I	GGWCC	2 cut(s)	107, 681
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	107, 681, 1120
BmiI	GGNNCC	2 cut(s)	18, 918
BmrFI	CCNGG	2 cut(s)	30, 1119
BmsI	GCATC	3 cut(s)	193, 639, 1168
BmtI	GCTAGC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	1183
BplI	GAGNNNNNCTC	2 cut(s)	1028, 1060
BpmI	CTGGAG	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	883
BpuMI	CCSGG	1 cut(s)	1119
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	8 cut(s)	29, 104, 133, 217, 284, 1057, 1101, 1129
Bse1I	ACTGG	4 cut(s)	321, 379, 936, 1187
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	4 cut(s)	654, 829, 933, 1047
BseLI	CCNNNNNNNGG	8 cut(s)	29, 104, 133, 217, 284, 1057, 1101, 1129
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	975
BseNI	ACTGG	4 cut(s)	321, 379, 936, 1187
BseRI	GAGGAG	2 cut(s)	119, 497
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	2 cut(s)	20, 944
BseYI	CCCAGC	1 cut(s)	503
BsgI	GTGCAG	3 cut(s)	19, 63, 199
Bsh1236I	CGCG	1 cut(s)	1199
BshFI	GGCC	1 cut(s)	1122
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	1118
BslFI	GGGAC	1 cut(s)	1118
BslI	CCNNNNNNNGG	8 cut(s)	29, 104, 133, 217, 284, 1057, 1101, 1129
BsmAI	GTCTC	2 cut(s)	65, 980
BsmFI	GGGAC	1 cut(s)	1118
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	1122
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	580, 638
Bsp143I	GATC	7 cut(s)	16, 118, 123, 139, 449, 523, 1084
BspACI	CCGC	3 cut(s)	98, 574, 1130
BspANI	GGCC	1 cut(s)	1122
BspCNI	CTCAG	1 cut(s)	976
BspFNI	CGCG	1 cut(s)	1199
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	18, 918
BspMAI	CTGCAG	1 cut(s)	1036
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	4 cut(s)	11, 24, 118, 1092
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	4 cut(s)	321, 379, 936, 1187
BssMI	GATC	7 cut(s)	16, 118, 123, 139, 449, 523, 1084
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	869
BstC8I	GCNNGC	4 cut(s)	547, 576, 764, 1065
BstDEI	CTNAG	4 cut(s)	56, 419, 644, 984
BstENI	CCTNNNNNAGG	3 cut(s)	131, 1055, 1099
BstF5I	GGATG	4 cut(s)	654, 829, 933, 1047
BstFNI	CGCG	1 cut(s)	1199
BstHHI	GCGC	1 cut(s)	1199
BstKTI	GATC	7 cut(s)	19, 121, 126, 142, 452, 526, 1087
BstMAI	GTCTC	2 cut(s)	65, 980
BstMBI	GATC	7 cut(s)	16, 118, 123, 139, 449, 523, 1084
BstMWI	GCNNNNNNNGC	3 cut(s)	424, 584, 741
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	28, 1117
BstSFI	CTRYAG	2 cut(s)	1032, 1088
BstSLI	GKGCMC	1 cut(s)	638
BstUI	CGCG	1 cut(s)	1199
BstV1I	GCAGC	2 cut(s)	20, 944
BstV2I	GAAGAC	1 cut(s)	1183
BstX2I	RGATCY	2 cut(s)	16, 1084
BstYI	RGATCY	2 cut(s)	16, 1084
BsuRI	GGCC	1 cut(s)	1122
BtsCI	GGATG	4 cut(s)	654, 829, 933, 1047
BtsI	GCAGTG	2 cut(s)	594, 757
BtsIMutI	CAGTG	5 cut(s)	328, 594, 672, 757, 1012
Cac8I	GCNNGC	4 cut(s)	547, 576, 764, 1065
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	1199
Cfr13I	GGNCC	3 cut(s)	107, 681, 1120
Csp6I	GTAC	2 cut(s)	53, 628
CviAII	CATG	6 cut(s)	335, 382, 631, 685, 895, 990
CviQI	GTAC	2 cut(s)	53, 628
DdeI	CTNAG	4 cut(s)	56, 419, 644, 984
DpnI	GATC	7 cut(s)	18, 120, 125, 141, 451, 525, 1086
DpnII	GATC	7 cut(s)	16, 118, 123, 139, 449, 523, 1084
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	2 cut(s)	107, 681
Eco57I	CTGAAG	3 cut(s)	810, 988, 1177
Eco88I	CYCGRG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	3 cut(s)	131, 1055, 1099
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	580
FaeI	CATG	6 cut(s)	338, 385, 634, 688, 898, 993
FalI	AAGNNNNNCTT	2 cut(s)	1125, 1157
FaqI	GGGAC	1 cut(s)	1118
FatI	CATG	6 cut(s)	334, 381, 630, 684, 894, 989
FauI	CCCGC	2 cut(s)	105, 567
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	34, 933
FokI	GGATG	4 cut(s)	661, 836, 940, 1034
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	2 cut(s)	34, 933
FspBI	CTAG	2 cut(s)	546, 1155
GlaI	GCGC	1 cut(s)	1198
GluI	GCNGC	2 cut(s)	34, 933
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	1122
HapII	CCGG	1 cut(s)	1118
HhaI	GCGC	1 cut(s)	1199
Hin1II	CATG	6 cut(s)	338, 385, 634, 688, 898, 993
Hin6I	GCGC	1 cut(s)	1197
HinP1I	GCGC	1 cut(s)	1197
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	5 cut(s)	221, 439, 725, 994, 1041
HpaII	CCGG	1 cut(s)	1118
HphI	GGTGA	2 cut(s)	86, 968
Hpy188I	TCNGA	4 cut(s)	123, 144, 454, 730
Hpy188III	TCNNGA	5 cut(s)	113, 335, 701, 862, 920
HpyAV	CCTTC	7 cut(s)	529, 785, 917, 947, 1012, 1075, 1127
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	424, 584, 741
HpyF3I	CTNAG	4 cut(s)	56, 419, 644, 984
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	6 cut(s)	338, 385, 634, 688, 898, 993
HspAI	GCGC	1 cut(s)	1197
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	7 cut(s)	16, 118, 123, 139, 449, 523, 1084
LmnI	GCTCC	4 cut(s)	385, 406, 980, 1060
Lsp1109I	GCAGC	2 cut(s)	20, 944
LweI	GCATC	3 cut(s)	193, 639, 1168
MaeI	CTAG	2 cut(s)	546, 1155
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	175, 377
MalI	GATC	7 cut(s)	18, 120, 125, 141, 451, 525, 1086
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	7 cut(s)	16, 118, 123, 139, 449, 523, 1084
MboII	GAAGA	6 cut(s)	212, 886, 892, 898, 1170, 1183
MflI	RGATCY	2 cut(s)	16, 1084
MhlI	GDGCHC	2 cut(s)	580, 638
MluCI	AATT	6 cut(s)	78, 259, 557, 612, 639, 661
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	4 cut(s)	88, 229, 702, 801
MroXI	GAANNNNTTC	2 cut(s)	890, 906
MseI	TTAA	5 cut(s)	363, 560, 696, 714, 1056
MslI	CAYNNNNRTG	1 cut(s)	467
MspI	CCGG	1 cut(s)	1118
MspR9I	CCNGG	2 cut(s)	30, 1119
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	1199
MwoI	GCNNNNNNNGC	3 cut(s)	424, 584, 741
NciI	CCSGG	1 cut(s)	1119
NdeII	GATC	7 cut(s)	16, 118, 123, 139, 449, 523, 1084
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	6 cut(s)	338, 385, 634, 688, 898, 993
NlaIV	GGNNCC	2 cut(s)	18, 918
PaeR7I	CTCGAG	1 cut(s)	131
PagI	TCATGA	1 cut(s)	334
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	2 cut(s)	890, 906
PfeI	GAWTC	4 cut(s)	439, 725, 994, 1041
PkrI	GCNGC	2 cut(s)	35, 934
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	18, 918
PspPI	GGNCC	3 cut(s)	107, 681, 1120
PspXI	VCTCGAGB	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	1036
PsuI	RGATCY	2 cut(s)	16, 1084
RsaI	GTAC	2 cut(s)	54, 629
RsaNI	GTAC	2 cut(s)	53, 628
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	5 cut(s)	363, 560, 696, 714, 1056
SatI	GCNGC	2 cut(s)	34, 933
Sau3AI	GATC	7 cut(s)	16, 118, 123, 139, 449, 523, 1084
Sau96I	GGNCC	3 cut(s)	107, 681, 1120
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	30, 1119
SduI	GDGCHC	2 cut(s)	580, 638
SfaNI	GCATC	3 cut(s)	193, 639, 1168
SfcI	CTRYAG	2 cut(s)	1032, 1088
Sfr274I	CTCGAG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	107, 681
SlaI	CTCGAG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	131, 862
SmoI	CTYRAG	2 cut(s)	131, 862
Sse9I	AATT	6 cut(s)	78, 259, 557, 612, 639, 661
SsiI	CCGC	3 cut(s)	98, 574, 1130
SspMI	CTAG	2 cut(s)	546, 1155
StyD4I	CCNGG	2 cut(s)	28, 1117
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	132, 618, 997
TasI	AATT	6 cut(s)	78, 259, 557, 612, 639, 661
TatI	WGTACW	2 cut(s)	52, 627
TfiI	GAWTC	4 cut(s)	439, 725, 994, 1041
Tru1I	TTAA	5 cut(s)	363, 560, 696, 714, 1056
Tru9I	TTAA	5 cut(s)	363, 560, 696, 714, 1056
TscAI	CASTG	5 cut(s)	328, 594, 672, 764, 1012
TseI	GCWGC	2 cut(s)	33, 932
TspDTI	ATGAA	5 cut(s)	213, 254, 883, 899, 1002
TspGWI	ACGGA	3 cut(s)	233, 235, 346
TspRI	CASTG	5 cut(s)	328, 594, 672, 764, 1012
VpaK11BI	GGWCC	2 cut(s)	107, 681
XagI	CCTNNNNNAGG	3 cut(s)	131, 1055, 1099
XapI	RAATTY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	890, 906
XspI	CTAG	2 cut(s)	546, 1155
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.