FvH4_1g25731

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006180
Physical Location & Seq
Reverse (-)
17619099 .. 17623180
4082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25731.t1

Sequence Viewer

Length: 1194 bp
ATGGAACCACCCTCTTCAGACTGTAGAGGTGCGGAAGCAGTACTAAATCTCCAACCCAGCTCATCAATTCCTATTACATACCACCCTCTCTTTGGTCCTCACACTGATCTGATCCTCCTTGAGCTTGATGAGAAGCTCCTTCCTGATATCCTTCACCAAAGAGTAACTGTTAGAGGACAGCCTGATGAAGTTGCAGTCATCTGCACGGAATCAAAGACTTATGCAATCAAGTCCGTTGGAACTTCCAATTCTGTTTTCCTCATACCCCCATCTTGTCAATTTAATTCTTTCGAAGAACCAAAATGTTTGGATGAGAATTATCATGACCGGCAACTTGCTGCATCTGTCCTCAAGATTGCACCTGGTACCATGGAGCTTGTTGAAATTGCTCCAAAGCTTGACAAGCTCAGGTTGCTACTTTCTGAGAACCCTTATAAAACTGAGGAGGACACAGAAATGGGAGATCTGGAAGAGATGGAAAGGGAGAATGTAGGACTGTATAGATGGGACGATCTTATTGAGAAGGTTCAAGCAAGTAACGATGAGTTAAGAAATGGGTTACATGCTCTTTCAGCTGTGGAGATAAATGGGTACTGGAGAATTGTAGATGAAAAGTACATGGATACAATGCTAAGGATGCTTTTTCACAATGCAGTGTTGAATGACTGGTCCTTTGCCTCACTCAATCAAGATGAGGTTGTTAATGTACTAGTATCAGATGGCTTTCCATACAAACTTGCAAACCATTGCTTGCGTGCCTTTGGTAGTAAGGTGGATGAGGGTGTGGGCACAAGTAATACATGGAAGTTGGATGTAAGGAAGGTGTGTGTGCACTTTGCAAGAGAAATCTTGAGAGGCGGGAAGAGGAAAATGGAGAATTTCATGGAGGAGTGGATGCGAAAAATTCCTGAAGGGATGCAAGCAAGTTTTGATTTGTTGGAAGGTGAAGTTTTGACAGAGAGGATTGGTATTGAGACATGGATTCGTGCCTTCTGTGTTTCATCACTACCCAGCAGTCCTGCTGAGCGGTTCTCCATCTTGTTTAAACAGCGTCCGAAATGGGAGTGGAAGGATCTACAGCCTTTCATCAGGGACTTGAACGTGCCCGGTCTTTCTGCAGAGGGTTTGCTATTAAAGTACACGAGAAGATTACAACCAACCATGGACACAGAACCAGTTTTCTGCTCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dcc1

Protein Analysis

398

Amino Acids

45.38

Weight (kDa)

5.05

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dcc1 PF09724 38 - 363 2.5e-89 Sister chromatid cohesion protein Dcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 1027
AciI CCGC 3 cut(s) 32, 858, 1027
AclWI GGATC 2 cut(s) 106, 1080
AcsI RAATTY 2 cut(s) 877, 903
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 6 cut(s) 42, 367, 593, 617, 708, 1139
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 4 cut(s) 383, 530, 661, 1099
AhlI ACTAGT 1 cut(s) 709
AjnI CCWGG 1 cut(s) 361
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 7 cut(s) 60, 124, 136, 376, 397, 406, 575
AluI AGCT 7 cut(s) 60, 124, 136, 376, 397, 406, 575
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 1 cut(s) 968
Alw44I GTGCAC 1 cut(s) 830
AlwI GGATC 2 cut(s) 106, 1080
ApaLI GTGCAC 1 cut(s) 830
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 877, 903
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
Asp718I GGTACC 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 95, 669
AsuC2I CCSGG 1 cut(s) 1107
AsuHPI GGTGA 2 cut(s) 146, 956
AsuII TTCGAA 1 cut(s) 291
AvaII GGWCC 2 cut(s) 95, 669
BaeGI GKGCMC 3 cut(s) 791, 834, 1107
BanI GGYRCC 1 cut(s) 365
BauI CACGAG 1 cut(s) 1141
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 1 cut(s) 325
BccI CCATC 5 cut(s) 277, 469, 498, 713, 1043
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 616
BcnI CCSGG 1 cut(s) 1107
BcoDI GTCTC 1 cut(s) 968
BcuI ACTAGT 1 cut(s) 709
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 3 cut(s) 22, 1076, 1116
BfuI GTATCC 1 cut(s) 616
BglII AGATCT 1 cut(s) 463
BisI GCNGC 1 cut(s) 339
BlpI GCTNAGC 1 cut(s) 1023
BlsI GCNGC 1 cut(s) 340
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 363, 1107
Bme18I GGWCC 2 cut(s) 95, 669
BmgT120I GGNCC 2 cut(s) 95, 669
BmiI GGNNCC 2 cut(s) 6, 367
BmrFI CCNGG 2 cut(s) 363, 1107
BmsI GCATC 4 cut(s) 350, 627, 885, 906
BplI GAGNNNNNCTC 2 cut(s) 1016, 1048
BpmI CTGGAG 1 cut(s) 616
Bpu10I CCTNAGC 2 cut(s) 407, 632
Bpu1102I GCTNAGC 1 cut(s) 1023
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 4 cut(s) 140, 335, 871, 1171
BpuMI CCSGG 1 cut(s) 1107
BsaJI CCNNGG 2 cut(s) 369, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 3 cut(s) 599, 671, 1175
Bse3DI GCAATG 1 cut(s) 745
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 369, 1161
BseGI GGATG 6 cut(s) 316, 642, 781, 817, 900, 921
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 4 cut(s) 414, 421, 432, 1014
BseNI ACTGG 3 cut(s) 599, 671, 1175
BseRI GAGGAG 2 cut(s) 458, 902
BseSI GKGCMC 3 cut(s) 791, 834, 1107
BseXI GCAGC 1 cut(s) 325
BseYI CCCAGC 2 cut(s) 56, 1010
BsgI GTGCAG 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 834
BsiSI CCGG 2 cut(s) 328, 1107
BslFI GGGAC 2 cut(s) 521, 1106
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 968
BsmFI GGGAC 2 cut(s) 521, 1106
Bsp119I TTCGAA 1 cut(s) 291
Bsp1286I GDGCHC 3 cut(s) 791, 834, 1107
Bsp143I GATC 5 cut(s) 106, 111, 463, 511, 1072
Bsp1720I GCTNAGC 1 cut(s) 1023
Bsp19I CCATGG 2 cut(s) 369, 1161
BspACI CCGC 3 cut(s) 32, 858, 1027
BspCNI CTCAG 4 cut(s) 415, 420, 433, 1015
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 6, 367
BspMAI CTGCAG 1 cut(s) 1120
BspPI GGATC 2 cut(s) 106, 1080
BspT104I TTCGAA 1 cut(s) 291
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 1027
BsrDI GCAATG 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 3 cut(s) 599, 671, 1175
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 369, 1161
BssMI GATC 5 cut(s) 106, 111, 463, 511, 1072
BssSI CACGAG 1 cut(s) 1141
BssT1I CCWWGG 2 cut(s) 369, 1161
Bst2BI CACGAG 1 cut(s) 1141
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 23, 169, 498
Bst6I CTCTTC 3 cut(s) 19, 465, 857
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 3 cut(s) 752, 756, 921
BstDEI CTNAG 5 cut(s) 407, 423, 441, 632, 1023
BstDSI CCRYGG 2 cut(s) 369, 1161
BstF5I GGATG 6 cut(s) 316, 642, 781, 817, 900, 921
BstKTI GATC 5 cut(s) 109, 114, 466, 514, 1075
BstMAI GTCTC 1 cut(s) 968
BstMBI GATC 5 cut(s) 106, 111, 463, 511, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 403, 412, 572, 637
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 361, 1105
BstSFI CTRYAG 3 cut(s) 22, 1076, 1116
BstSLI GKGCMC 3 cut(s) 791, 834, 1107
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 2 cut(s) 463, 1072
BstYI RGATCY 2 cut(s) 463, 1072
BsuI GTATCC 1 cut(s) 616
BtgI CCRYGG 2 cut(s) 369, 1161
BtsCI GGATG 6 cut(s) 316, 642, 781, 817, 900, 921
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 102, 660
Cac8I GCNNGC 3 cut(s) 752, 756, 921
CciI TCATGA 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 2 cut(s) 95, 669
CseI GACGC 1 cut(s) 1040
CsiI ACCWGGT 1 cut(s) 361
Csp6I GTAC 6 cut(s) 41, 366, 592, 616, 707, 1138
CviAII CATG 8 cut(s) 323, 370, 563, 619, 801, 883, 978, 1162
CviQI GTAC 6 cut(s) 41, 366, 592, 616, 707, 1138
DdeI CTNAG 5 cut(s) 407, 423, 441, 632, 1023
DpnI GATC 5 cut(s) 108, 113, 465, 513, 1074
DpnII GATC 5 cut(s) 106, 111, 463, 511, 1072
DraI TTTAAA 1 cut(s) 1045
Eam1104I CTCTTC 3 cut(s) 19, 465, 857
EarI CTCTTC 3 cut(s) 19, 465, 857
Eco130I CCWWGG 2 cut(s) 369, 1161
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 95, 669
Eco57I CTGAAG 1 cut(s) 930
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 2 cut(s) 369, 1161
ErhI CCWWGG 2 cut(s) 369, 1161
FaeI CATG 8 cut(s) 326, 373, 566, 622, 804, 886, 981, 1165
FaqI GGGAC 2 cut(s) 521, 1106
FatI CATG 8 cut(s) 322, 369, 562, 618, 800, 882, 977, 1161
FauI CCCGC 1 cut(s) 851
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 6 cut(s) 323, 649, 788, 824, 907, 928
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 710
GluI GCNGC 1 cut(s) 339
GsaI CCCAGC 2 cut(s) 60, 1014
GsuI CTGGAG 1 cut(s) 616
HapII CCGG 2 cut(s) 328, 1107
HgaI GACGC 1 cut(s) 1040
Hin1II CATG 8 cut(s) 326, 373, 566, 622, 804, 886, 981, 1165
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 2 cut(s) 209, 982
HpaII CCGG 2 cut(s) 328, 1107
HphI GGTGA 2 cut(s) 146, 956
Hpy166II GTNNAC 2 cut(s) 832, 1140
Hpy188I TCNGA 5 cut(s) 19, 111, 424, 718, 1056
Hpy188III TCNNGA 8 cut(s) 143, 323, 352, 467, 689, 850, 908, 1188
Hpy8I GTNNAC 2 cut(s) 832, 1140
HpyAV CCTTC 8 cut(s) 149, 161, 517, 814, 905, 935, 1000, 1063
HpyCH4III ACNGT 3 cut(s) 23, 169, 498
HpyCH4IV ACGT 1 cut(s) 1101
HpyF10VI GCNNNNNNNGC 4 cut(s) 403, 412, 572, 637
HpyF3I CTNAG 5 cut(s) 407, 423, 441, 632, 1023
HpySE526I ACGT 1 cut(s) 1101
Hsp92II CATG 8 cut(s) 326, 373, 566, 622, 804, 886, 981, 1165
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 5 cut(s) 106, 111, 463, 511, 1072
LmnI GCTCC 3 cut(s) 141, 373, 394
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 4 cut(s) 350, 627, 885, 906
MabI ACCWGGT 1 cut(s) 361
MaeI CTAG 1 cut(s) 710
MaeII ACGT 1 cut(s) 1101
MaeIII GTNAC 3 cut(s) 163, 536, 558
MalI GATC 5 cut(s) 108, 113, 465, 513, 1074
MbiI CCGCTC 1 cut(s) 1027
MboI GATC 5 cut(s) 106, 111, 463, 511, 1072
MboII GAAGA 5 cut(s) 6, 305, 482, 874, 1158
MflI RGATCY 2 cut(s) 463, 1072
MhlI GDGCHC 3 cut(s) 791, 834, 1107
MluCI AATT 9 cut(s) 66, 247, 278, 283, 316, 384, 600, 877, 903
MmeI TCCRAC 4 cut(s) 76, 217, 789, 918
MseI TTAA 5 cut(s) 282, 548, 702, 1044, 1133
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 2 cut(s) 328, 1107
MspR9I CCNGG 2 cut(s) 363, 1107
MssI GTTTAAAC 1 cut(s) 1045
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 403, 412, 572, 637
NciI CCSGG 1 cut(s) 1107
NcoI CCATGG 2 cut(s) 369, 1161
NdeII GATC 5 cut(s) 106, 111, 463, 511, 1072
NlaIII CATG 8 cut(s) 326, 373, 566, 622, 804, 886, 981, 1165
NlaIV GGNNCC 2 cut(s) 6, 367
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 1 cut(s) 291
PagI TCATGA 1 cut(s) 322
PfeI GAWTC 2 cut(s) 209, 982
PkrI GCNGC 1 cut(s) 340
PmeI GTTTAAAC 1 cut(s) 1045
PsiI TTATAA 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 2 cut(s) 56, 1010
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 6, 367
PspPI GGNCC 2 cut(s) 95, 669
PstI CTGCAG 1 cut(s) 1120
PsuI RGATCY 2 cut(s) 463, 1072
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 6 cut(s) 42, 367, 593, 617, 708, 1139
RsaNI GTAC 6 cut(s) 41, 366, 592, 616, 707, 1138
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 5 cut(s) 282, 548, 702, 1044, 1133
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 5 cut(s) 106, 111, 463, 511, 1072
Sau96I GGNCC 2 cut(s) 95, 669
ScaI AGTACT 1 cut(s) 42
ScrFI CCNGG 2 cut(s) 363, 1107
SduI GDGCHC 3 cut(s) 791, 834, 1107
SexAI ACCWGGT 1 cut(s) 361
SfaNI GCATC 4 cut(s) 350, 627, 885, 906
SfcI CTRYAG 3 cut(s) 22, 1076, 1116
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 2 cut(s) 95, 669
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 4 cut(s) 119, 350, 850, 1186
SmoI CTYRAG 4 cut(s) 119, 350, 850, 1186
SpeI ACTAGT 1 cut(s) 709
Sse9I AATT 9 cut(s) 66, 247, 278, 283, 316, 384, 600, 877, 903
SsiI CCGC 3 cut(s) 32, 858, 1027
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 361, 1105
StyI CCWWGG 2 cut(s) 369, 1161
TaaI ACNGT 3 cut(s) 23, 169, 498
TaiI ACGT 1 cut(s) 1104
TaqI TCGA 1 cut(s) 291
TasI AATT 9 cut(s) 66, 247, 278, 283, 316, 384, 600, 877, 903
TatI WGTACW 4 cut(s) 40, 615, 706, 1137
TfiI GAWTC 2 cut(s) 209, 982
Tru1I TTAA 5 cut(s) 282, 548, 702, 1044, 1133
Tru9I TTAA 5 cut(s) 282, 548, 702, 1044, 1133
TscAI CASTG 2 cut(s) 109, 660
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 5 cut(s) 201, 624, 871, 990, 1075
TspGWI ACGGA 2 cut(s) 221, 223
TspRI CASTG 2 cut(s) 109, 660
VneI GTGCAC 1 cut(s) 830
VpaK11BI GGWCC 2 cut(s) 95, 669
XapI RAATTY 2 cut(s) 877, 903
XceI RCATGY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XspI CTAG 1 cut(s) 710
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.