MD02G1227400.v1.1

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0006180
Physical Location & Seq
Forward (+)
26927296 .. 26929917
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1227400.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGGAGAAAGCTATGGACCCACCATCTCCAGCCTGCACTGGTGCTGAAGCAGTACTAAGTCTCCAACCCAACTCATCAATTCCTATTACATATCACCCGCTCTTTGGTCCACACGATGATCTGATCCTCCTCGAGGTTGATCAGAAACTTCTCCCTGATGTCCTGCACCAAAGAGTAACTGTTAGAGGACAGCCTGATGAAGATGCAGTCCTCTGCACGGAGTCAAAAACTTATGCAATGAAGTCCGTTGGAACTTCAAATTCTGTTTTTCTCATACCCCCATGCGGTCAATATACTACTTTTGAAACCCCAAAGTGTTGTGATGAGAACTATCATGACCCCCAATCTGTTGCTTCTGTCATTAAGGTTGCAACTGGTAACATGGAGCTTGTTGAAGTTGCTCCCCGACTTGACAAGCTAAGGTTGCTACTTTCCCAAAATCCTTACCAATCTGATGAGGAAATAGAAATGGTGGATTTAGAGGAGATGGAGAGAACAAATACAGGACTGTATAGATGGAATGATCTTATCGAGAAGGTTCAAGCCAGTGATTACGAATTAAGGACTGGGTTGCAGGCTCTTTCAGCAGTGGAGATAAATGGATACTGGAGAATTGTGGATGAGAAGTACATGGGCACAATTCTAAGGATGCTTTTGCACAATTCAGTGTTGAATGACTGGTCCTTGTGTTTGCTTAATCAAGATGATGTTGTCAATATGTTGGAATCAGATGGCTTTCCTCGCAAACTTGCAGACCACTGCTTGCATGTTTTTGGTAGTAAGGTGGCTGAAGGTGCGACCACAAGTCGTGTCTGGAAGTTGGATGAGAGGAAGGTATGTGTGCATTTTGCAAGAGAAATCTTGAGTGATGGGAAGAGGAAGATGAAGAAGTTCATGGAGGAATGGGTTCGCAAGGTTCCTGAAGGGATGGCAGCTAGTTTTGACATATTGGAAGGTGAAGTTTTGATAGAGAGGCTTGGAGCTGAGACATGGATTCGAGCCTTCAGTGTTTCATCTCTACCCTACAATCCTGCAGAACGATTCTCCATCCTTTTTCAAGAGTGTCCAAAATGGGAATGGAAGGATCTACAGCCCTTTATCAGGGACTTGAATGTGCCAGGACTTTCTGCAGAAGGTTTGCTTCTCAAATACACTAGAAGAACACAACCAACTGCTGATGCAGAACCAGTCTTCAGCGCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dcc1

Protein Analysis

402

Amino Acids

45.5

Weight (kDa)

4.98

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dcc1 PF09724 42 - 367 8.2e-90 Sister chromatid cohesion protein Dcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 100
AciI CCGC 2 cut(s) 98, 285
AclWI GGATC 2 cut(s) 118, 1092
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 5 cut(s) 66, 810, 942, 988, 1177
AfaI GTAC 2 cut(s) 54, 629
AfiI CCNNNNNNNGG 5 cut(s) 104, 133, 217, 284, 1101
AgsI TTSAA 7 cut(s) 258, 305, 395, 542, 673, 1058, 1111
AhdI GACNNNNNGTC 1 cut(s) 804
AjnI CCWGG 1 cut(s) 1117
AluBI AGCT 5 cut(s) 11, 388, 418, 935, 983
AluI AGCT 5 cut(s) 11, 388, 418, 935, 983
Alw26I GTCTC 2 cut(s) 65, 980
AlwI GGATC 2 cut(s) 118, 1092
Ama87I CYCGRG 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 932
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 2 cut(s) 890, 906
AspLEI GCGC 1 cut(s) 1199
AspS9I GGNCC 3 cut(s) 16, 107, 681
AsuHPI GGTGA 2 cut(s) 86, 968
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 3 cut(s) 16, 107, 681
BaeGI GKGCMC 1 cut(s) 638
BbsI GAAGAC 1 cut(s) 1183
BbvI GCAGC 1 cut(s) 944
BccI CCATC 7 cut(s) 31, 481, 510, 725, 863, 922, 1055
BciT130I CCWGG 1 cut(s) 1119
BciVI GTATCC 1 cut(s) 596
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 65, 980
BfaI CTAG 2 cut(s) 936, 1155
BfmI CTRYAG 3 cut(s) 1032, 1088, 1128
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 1 cut(s) 933
BlsI GCNGC 1 cut(s) 934
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 1119
Bme18I GGWCC 3 cut(s) 16, 107, 681
BmeRI GACNNNNNGTC 1 cut(s) 804
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 3 cut(s) 16, 107, 681
BmiI GGNNCC 2 cut(s) 18, 918
BmrFI CCNGG 1 cut(s) 1119
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 3 cut(s) 193, 639, 1168
BmuI ACTGGG 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 1183
BpmI CTGGAG 2 cut(s) 12, 628
Bpu10I CCTNAGC 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 883
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 5 cut(s) 104, 133, 217, 284, 1101
Bse1I ACTGG 7 cut(s) 43, 379, 546, 571, 611, 683, 1187
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 1119
BseGI GGATG 5 cut(s) 625, 654, 829, 933, 1047
BseLI CCNNNNNNNGG 5 cut(s) 104, 133, 217, 284, 1101
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 7 cut(s) 43, 379, 546, 571, 611, 683, 1187
BseRI GAGGAG 2 cut(s) 119, 497
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 1 cut(s) 944
BsgI GTGCAG 3 cut(s) 19, 149, 199
BsiHKCI CYCGRG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 1118
BslI CCNNNNNNNGG 5 cut(s) 104, 133, 217, 284, 1101
BsmAI GTCTC 2 cut(s) 65, 980
BsmFI GGGAC 1 cut(s) 1118
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 638
Bsp143I GATC 5 cut(s) 118, 123, 139, 523, 1084
BspACI CCGC 2 cut(s) 98, 285
BspCNI CTCAG 1 cut(s) 976
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 18, 918
BspMAI CTGCAG 2 cut(s) 1036, 1132
BspPI GGATC 2 cut(s) 118, 1092
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 7 cut(s) 43, 379, 546, 571, 611, 683, 1187
BssMI GATC 5 cut(s) 118, 123, 139, 523, 1084
Bst2UI CCWGG 1 cut(s) 1119
Bst4CI ACNGT 2 cut(s) 181, 510
Bst6I CTCTTC 1 cut(s) 869
BstC8I GCNNGC 3 cut(s) 34, 576, 764
BstDEI CTNAG 4 cut(s) 56, 419, 644, 984
BstENI CCTNNNNNAGG 2 cut(s) 131, 1099
BstF5I GGATG 5 cut(s) 625, 654, 829, 933, 1047
BstHHI GCGC 1 cut(s) 1199
BstKTI GATC 5 cut(s) 121, 126, 142, 526, 1087
BstMAI GTCTC 2 cut(s) 65, 980
BstMBI GATC 5 cut(s) 118, 123, 139, 523, 1084
BstMWI GCNNNNNNNGC 4 cut(s) 424, 584, 741, 794
BstNI CCWGG 1 cut(s) 1119
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 1 cut(s) 1117
BstSFI CTRYAG 3 cut(s) 1032, 1088, 1128
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 1 cut(s) 944
BstV2I GAAGAC 1 cut(s) 1183
BstX2I RGATCY 1 cut(s) 1084
BstYI RGATCY 1 cut(s) 1084
BsuI GTATCC 1 cut(s) 596
BtsCI GGATG 5 cut(s) 625, 654, 829, 933, 1047
BtsI GCAGTG 2 cut(s) 594, 757
BtsIMutI CAGTG 6 cut(s) 36, 553, 594, 672, 757, 1012
Cac8I GCNNGC 3 cut(s) 34, 576, 764
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 1199
Cfr13I GGNCC 3 cut(s) 16, 107, 681
Csp6I GTAC 2 cut(s) 53, 628
CviAII CATG 7 cut(s) 282, 335, 382, 631, 767, 895, 990
CviQI GTAC 2 cut(s) 53, 628
DdeI CTNAG 4 cut(s) 56, 419, 644, 984
DpnI GATC 5 cut(s) 120, 125, 141, 525, 1086
DpnII GATC 5 cut(s) 118, 123, 139, 523, 1084
DriI GACNNNNNGTC 1 cut(s) 804
Eam1104I CTCTTC 1 cut(s) 869
Eam1105I GACNNNNNGTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 869
Eco47I GGWCC 3 cut(s) 16, 107, 681
Eco57I CTGAAG 5 cut(s) 66, 810, 942, 988, 1177
Eco88I CYCGRG 1 cut(s) 131
EcoNI CCTNNNNNAGG 2 cut(s) 131, 1099
EcoRII CCWGG 1 cut(s) 1117
FaeI CATG 7 cut(s) 285, 338, 385, 634, 770, 898, 993
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FaqI GGGAC 1 cut(s) 1118
FatI CATG 7 cut(s) 281, 334, 381, 630, 766, 894, 989
FauI CCCGC 1 cut(s) 105
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 933
FokI GGATG 5 cut(s) 632, 661, 836, 940, 1034
Fsp4HI GCNGC 1 cut(s) 933
FspBI CTAG 2 cut(s) 936, 1155
GlaI GCGC 1 cut(s) 1198
GluI GCNGC 1 cut(s) 933
GsuI CTGGAG 2 cut(s) 12, 628
HhaI GCGC 1 cut(s) 1199
Hin1II CATG 7 cut(s) 285, 338, 385, 634, 770, 898, 993
Hin6I GCGC 1 cut(s) 1197
HinP1I GCGC 1 cut(s) 1197
HinfI GANTC 4 cut(s) 221, 725, 994, 1041
HphI GGTGA 2 cut(s) 86, 968
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 4 cut(s) 123, 144, 454, 730
Hpy188III TCNNGA 7 cut(s) 335, 532, 701, 814, 862, 920, 1058
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 8 cut(s) 529, 785, 826, 917, 947, 1012, 1075, 1127
HpyCH4III ACNGT 2 cut(s) 181, 510
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 584, 741, 794
HpyF3I CTNAG 4 cut(s) 56, 419, 644, 984
Hsp92II CATG 7 cut(s) 285, 338, 385, 634, 770, 898, 993
HspAI GCGC 1 cut(s) 1197
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 5 cut(s) 118, 123, 139, 523, 1084
LmnI GCTCC 3 cut(s) 385, 406, 980
Lsp1109I GCAGC 1 cut(s) 944
LweI GCATC 3 cut(s) 193, 639, 1168
MaeI CTAG 2 cut(s) 936, 1155
MaeIII GTNAC 2 cut(s) 175, 377
MalI GATC 5 cut(s) 120, 125, 141, 525, 1086
MbiI CCGCTC 1 cut(s) 100
MboI GATC 5 cut(s) 118, 123, 139, 523, 1084
MboII GAAGA 6 cut(s) 212, 886, 892, 898, 1170, 1183
MflI RGATCY 1 cut(s) 1084
MhlI GDGCHC 1 cut(s) 638
MluCI AATT 6 cut(s) 78, 259, 557, 612, 639, 661
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 4 cut(s) 88, 229, 702, 801
MroXI GAANNNNTTC 2 cut(s) 890, 906
MseI TTAA 3 cut(s) 363, 560, 696
MspR9I CCNGG 1 cut(s) 1119
MvaI CCWGG 1 cut(s) 1119
MwoI GCNNNNNNNGC 4 cut(s) 424, 584, 741, 794
NdeII GATC 5 cut(s) 118, 123, 139, 523, 1084
NlaIII CATG 7 cut(s) 285, 338, 385, 634, 770, 898, 993
NlaIV GGNNCC 2 cut(s) 18, 918
NspI RCATGY 1 cut(s) 770
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 1 cut(s) 334
PdmI GAANNNNTTC 2 cut(s) 890, 906
PfeI GAWTC 3 cut(s) 725, 994, 1041
PkrI GCNGC 1 cut(s) 934
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 1117
PspGI CCWGG 1 cut(s) 1117
PspN4I GGNNCC 2 cut(s) 18, 918
PspPI GGNCC 3 cut(s) 16, 107, 681
PspXI VCTCGAGB 1 cut(s) 131
PstI CTGCAG 2 cut(s) 1036, 1132
PsuI RGATCY 1 cut(s) 1084
RsaI GTAC 2 cut(s) 54, 629
RsaNI GTAC 2 cut(s) 53, 628
SaqAI TTAA 3 cut(s) 363, 560, 696
SatI GCNGC 1 cut(s) 933
Sau3AI GATC 5 cut(s) 118, 123, 139, 523, 1084
Sau96I GGNCC 3 cut(s) 16, 107, 681
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 1119
SduI GDGCHC 1 cut(s) 638
SfaNI GCATC 3 cut(s) 193, 639, 1168
SfcI CTRYAG 3 cut(s) 1032, 1088, 1128
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 3 cut(s) 16, 107, 681
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 131, 862
SmoI CTYRAG 2 cut(s) 131, 862
Sse9I AATT 6 cut(s) 78, 259, 557, 612, 639, 661
SsiI CCGC 2 cut(s) 98, 285
SspMI CTAG 2 cut(s) 936, 1155
StyD4I CCNGG 1 cut(s) 1117
TaaI ACNGT 2 cut(s) 181, 510
TaqI TCGA 3 cut(s) 132, 531, 997
TasI AATT 6 cut(s) 78, 259, 557, 612, 639, 661
TatI WGTACW 2 cut(s) 52, 627
TfiI GAWTC 3 cut(s) 725, 994, 1041
Tru1I TTAA 3 cut(s) 363, 560, 696
Tru9I TTAA 3 cut(s) 363, 560, 696
TscAI CASTG 6 cut(s) 43, 553, 594, 672, 764, 1012
TseI GCWGC 1 cut(s) 932
TspDTI ATGAA 5 cut(s) 213, 254, 883, 899, 1002
TspGWI ACGGA 2 cut(s) 233, 235
TspRI CASTG 6 cut(s) 43, 553, 594, 672, 764, 1012
VpaK11BI GGWCC 3 cut(s) 16, 107, 681
XagI CCTNNNNNAGG 2 cut(s) 131, 1099
XapI RAATTY 1 cut(s) 259
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 1074
XhoI CTCGAG 1 cut(s) 131
XmnI GAANNNNTTC 2 cut(s) 890, 906
XspI CTAG 2 cut(s) 936, 1155
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.