Rh1CG168500

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006180
Physical Location & Seq
Reverse (-)
36899221 .. 36901945
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG168500.1

Sequence Viewer

Length: 1104 bp
ATGAATGTTTTCTTCTTCATGAAGCTTAGTTTAAGTGTTCCACTTGTCTGTTATGATTTCTGTGTTTTTAGAGTGACTGTTAGAGGACAGCCTGATGAAGATGCAGTCATCTGCACGGAATCAAAGACTTACGCAATCAAGTCTGTTGGAACTTCGAATTCTGTTTTCCTCATACCCCCATCTTGTCAATTTAATTCTTTTGAAGAACCAAAATGTTTTAATGAGAATTATCATGACCGGCAATCTGCTGCATCTGTCCTTAAGATTGCACCTGGTACCATGGAGCTTGTTGAAATTGCTCCAAGACTTGACAAGCTCAGGTTGCTACTTTCTGAGAATCCTTACAAAACTGAGGAGGACACTGAAATGGAAGAACTGGGGGGCATGGAAAGAGAGAATGTAGGACTGTATAGATGGGAAGATCTTATTGAGAAGATTCAAGCAAGTAACGAGGAGTTAAGGAATGCGTTACAGGCTCTTTCAGCTGTGGAGATTGATGGGTACTGGAGAATTGTGGATGAAAGGTACATGGATACGATGCTAAGGATACTTTTGCACAATGCAGTGTTGAATGACTGGTCATTTGCCTCACTTAATCAAGATGAGGTTGTTAATGTGCTGGTATCAGATGGCTTTCCTCGCAAACTTGCAAATCATTGCCTGCATGCCTTTGGTAGTAAGGTGGATAAAGGTGTGGGCACAAGTAATACATGGAAGTTGGATGAGAGGAAAGTGTGTGTGCACTTTGCAATAGAAATCTTGAGAGACGGGAAGAGGAAAATGGAGAGTTTCATGGAGGAGTGGATGCGAAAAATTCCTGAAGGGATGCAAGCAAGTTTTGACATGTTGGAAGGTGAAGTTTTGACCGAGAAGATTGGCATTGAGACATGGATCCGTGCCTTCCGTGTTTCATCACTGCCGGGCAATCCTGCAGAGCGTTTCTCTATCCTGTTTAAAGAGCGTCCGAAATGGGAGTTGAAGGATCTACAGCCCTTCATCAGGGACTTGAATGTGCCCGGTCTTTCTGCAGAAGGTTTGCTTCTTAAGTACACGAGAAGATTACAACCAACTATGGACACAGAACCAGTTTTCAGCTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dcc1

Protein Analysis

367

Amino Acids

42.23

Weight (kDa)

5.15

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dcc1 PF09724 24 - 333 2.3e-88 Sister chromatid cohesion protein Dcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AclWI GGATC 3 cut(s) 886, 899, 990
AcsI RAATTY 2 cut(s) 157, 813
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 4 cut(s) 277, 503, 527, 1049
AfiI CCNNNNNNNGG 1 cut(s) 999
AflII CTTAAG 2 cut(s) 260, 1043
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 6 cut(s) 203, 293, 440, 571, 979, 1009
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 5 cut(s) 25, 286, 316, 485, 1095
AluI AGCT 5 cut(s) 25, 286, 316, 485, 1095
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 2 cut(s) 759, 878
Alw44I GTGCAC 1 cut(s) 740
AlwI GGATC 3 cut(s) 886, 899, 990
ApaLI GTGCAC 1 cut(s) 740
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 157, 813
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 275
AsuC2I CCSGG 2 cut(s) 921, 1017
AsuHPI GGTGA 1 cut(s) 866
AsuII TTCGAA 1 cut(s) 155
BaeGI GKGCMC 3 cut(s) 701, 744, 1017
BamHI GGATCC 1 cut(s) 891
BanI GGYRCC 1 cut(s) 275
BauI CACGAG 1 cut(s) 1051
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 1 cut(s) 235
BccI CCATC 4 cut(s) 187, 408, 491, 623
BciT130I CCWGG 1 cut(s) 273
BciVI GTATCC 2 cut(s) 526, 540
BcnI CCSGG 2 cut(s) 921, 1017
BcoDI GTCTC 2 cut(s) 759, 878
BfmI CTRYAG 3 cut(s) 930, 986, 1026
BfrI CTTAAG 2 cut(s) 260, 1043
BfuI GTATCC 2 cut(s) 526, 540
BglII AGATCT 1 cut(s) 421
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 3 cut(s) 273, 921, 1017
BmiI GGNNCC 2 cut(s) 277, 893
BmrFI CCNGG 3 cut(s) 273, 921, 1017
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 5 cut(s) 91, 260, 528, 795, 816
BmuI ACTGGG 1 cut(s) 386
BplI GAGNNNNNCTC 2 cut(s) 926, 958
BpmI CTGGAG 1 cut(s) 526
Bpu10I CCTNAGC 2 cut(s) 317, 542
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 2 cut(s) 781, 1081
BpuMI CCSGG 2 cut(s) 921, 1017
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 999
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 4 cut(s) 381, 509, 581, 1085
Bse3DI GCAATG 1 cut(s) 655
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 4 cut(s) 523, 727, 810, 831
BseLI CCNNNNNNNGG 1 cut(s) 999
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 3 cut(s) 324, 331, 342
BseNI ACTGG 4 cut(s) 381, 509, 581, 1085
BseRI GAGGAG 3 cut(s) 368, 467, 812
BseSI GKGCMC 3 cut(s) 701, 744, 1017
BseXI GCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 97
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 3 cut(s) 238, 920, 1017
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 1 cut(s) 999
BsmAI GTCTC 2 cut(s) 759, 878
BsmBI CGTCTC 1 cut(s) 759
BsmFI GGGAC 1 cut(s) 1016
BsmI GAATGC 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 701, 744, 1017
Bsp143I GATC 3 cut(s) 421, 891, 982
Bsp19I CCATGG 1 cut(s) 279
BspCNI CTCAG 3 cut(s) 325, 330, 343
BspHI TCATGA 2 cut(s) 18, 232
BspLI GGNNCC 2 cut(s) 277, 893
BspMAI CTGCAG 2 cut(s) 934, 1030
BspPI GGATC 3 cut(s) 886, 899, 990
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 275
BspTI CTTAAG 2 cut(s) 260, 1043
BsrDI GCAATG 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 4 cut(s) 381, 509, 581, 1085
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 3 cut(s) 421, 891, 982
BssSI CACGAG 1 cut(s) 1051
BssT1I CCWWGG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 1051
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 79, 408
Bst6I CTCTTC 1 cut(s) 767
BstAFI CTTAAG 2 cut(s) 260, 1043
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 662, 666, 831
BstDEI CTNAG 5 cut(s) 26, 317, 333, 351, 542
BstDSI CCRYGG 1 cut(s) 279
BstENI CCTNNNNNAGG 1 cut(s) 997
BstF5I GGATG 4 cut(s) 523, 727, 810, 831
BstKTI GATC 3 cut(s) 424, 894, 985
BstMAI GTCTC 2 cut(s) 759, 878
BstMBI GATC 3 cut(s) 421, 891, 982
BstMWI GCNNNNNNNGC 4 cut(s) 322, 473, 482, 639
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 2 cut(s) 668, 847
BstSCI CCNGG 3 cut(s) 271, 919, 1015
BstSFI CTRYAG 3 cut(s) 930, 986, 1026
BstSLI GKGCMC 3 cut(s) 701, 744, 1017
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 3 cut(s) 421, 891, 982
BstYI RGATCY 3 cut(s) 421, 891, 982
BsuI GTATCC 2 cut(s) 526, 540
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 4 cut(s) 523, 727, 810, 831
BtsI GCAGTG 2 cut(s) 570, 914
BtsIMutI CAGTG 3 cut(s) 360, 570, 914
Cac8I GCNNGC 3 cut(s) 662, 666, 831
CciI TCATGA 2 cut(s) 18, 232
Cfr10I RCCGGY 1 cut(s) 237
CseI GACGC 1 cut(s) 950
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 4 cut(s) 276, 502, 526, 1048
CviJI RGCY 9 cut(s) 25, 91, 286, 316, 476, 485, 633, 991, 1095
CviKI_1 RGCY 9 cut(s) 25, 91, 286, 316, 476, 485, 633, 991, 1095
CviQI GTAC 4 cut(s) 276, 502, 526, 1048
DdeI CTNAG 5 cut(s) 26, 317, 333, 351, 542
DpnI GATC 3 cut(s) 423, 893, 984
DpnII GATC 3 cut(s) 421, 891, 982
DraI TTTAAA 1 cut(s) 955
Eam1104I CTCTTC 1 cut(s) 767
EarI CTCTTC 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 840
EcoNI CCTNNNNNAGG 1 cut(s) 997
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 759
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FaqI GGGAC 1 cut(s) 1016
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 4 cut(s) 530, 734, 817, 838
Fsp4HI GCNGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 526
HapII CCGG 3 cut(s) 238, 920, 1017
HgaI GACGC 1 cut(s) 950
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 3 cut(s) 119, 337, 436
HpaII CCGG 3 cut(s) 238, 920, 1017
HphI GGTGA 1 cut(s) 866
Hpy166II GTNNAC 2 cut(s) 742, 1050
Hpy188I TCNGA 3 cut(s) 334, 628, 966
Hpy188III TCNNGA 6 cut(s) 19, 233, 599, 760, 818, 1098
Hpy8I GTNNAC 2 cut(s) 742, 1050
HpyAV CCTTC 6 cut(s) 815, 845, 910, 973, 1003, 1025
HpyCH4III ACNGT 2 cut(s) 79, 408
HpyF10VI GCNNNNNNNGC 4 cut(s) 322, 473, 482, 639
HpyF3I CTNAG 5 cut(s) 26, 317, 333, 351, 542
KpnI GGTACC 1 cut(s) 279
Kzo9I GATC 3 cut(s) 421, 891, 982
LmnI GCTCC 2 cut(s) 283, 304
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 5 cut(s) 91, 260, 528, 795, 816
MabI ACCWGGT 1 cut(s) 271
MaeIII GTNAC 3 cut(s) 73, 446, 468
MalI GATC 3 cut(s) 423, 893, 984
MboI GATC 3 cut(s) 421, 891, 982
MflI RGATCY 3 cut(s) 421, 891, 982
MhlI GDGCHC 3 cut(s) 701, 744, 1017
MluCI AATT 7 cut(s) 157, 188, 193, 226, 294, 510, 813
MmeI TCCRAC 3 cut(s) 127, 699, 828
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 9 cut(s) 32, 192, 219, 261, 458, 594, 612, 954, 1044
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 485
MspCI CTTAAG 2 cut(s) 260, 1043
MspI CCGG 3 cut(s) 238, 920, 1017
MspR9I CCNGG 3 cut(s) 273, 921, 1017
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 322, 473, 482, 639
NciI CCSGG 2 cut(s) 921, 1017
NcoI CCATGG 1 cut(s) 279
NdeII GATC 3 cut(s) 421, 891, 982
NlaIV GGNNCC 2 cut(s) 277, 893
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 2 cut(s) 668, 847
NspV TTCGAA 1 cut(s) 155
PaeI GCATGC 1 cut(s) 668
PagI TCATGA 2 cut(s) 18, 232
PciI ACATGT 1 cut(s) 843
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 119, 337, 436
PkrI GCNGC 1 cut(s) 250
PscI ACATGT 1 cut(s) 843
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 277, 893
PstI CTGCAG 2 cut(s) 934, 1030
PsuI RGATCY 3 cut(s) 421, 891, 982
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 4 cut(s) 277, 503, 527, 1049
RsaNI GTAC 4 cut(s) 276, 502, 526, 1048
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 9 cut(s) 32, 192, 219, 261, 458, 594, 612, 954, 1044
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 3 cut(s) 421, 891, 982
ScrFI CCNGG 3 cut(s) 273, 921, 1017
SduI GDGCHC 3 cut(s) 701, 744, 1017
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 5 cut(s) 91, 260, 528, 795, 816
SfcI CTRYAG 3 cut(s) 930, 986, 1026
SfuI TTCGAA 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 4 cut(s) 260, 760, 1043, 1096
SmoI CTYRAG 4 cut(s) 260, 760, 1043, 1096
SphI GCATGC 1 cut(s) 668
Sse9I AATT 7 cut(s) 157, 188, 193, 226, 294, 510, 813
StyD4I CCNGG 3 cut(s) 271, 919, 1015
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 79, 408
TaqI TCGA 1 cut(s) 155
TaqII GACCGA 1 cut(s) 881
TasI AATT 7 cut(s) 157, 188, 193, 226, 294, 510, 813
TatI WGTACW 1 cut(s) 1047
TfiI GAWTC 3 cut(s) 119, 337, 436
Tru1I TTAA 9 cut(s) 32, 192, 219, 261, 458, 594, 612, 954, 1044
Tru9I TTAA 9 cut(s) 32, 192, 219, 261, 458, 594, 612, 954, 1044
TscAI CASTG 3 cut(s) 367, 570, 921
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 8 cut(s) 7, 17, 35, 111, 534, 781, 900, 985
TspGWI ACGGA 3 cut(s) 131, 884, 893
TspRI CASTG 3 cut(s) 367, 570, 921
Vha464I CTTAAG 2 cut(s) 260, 1043
VneI GTGCAC 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 997
XapI RAATTY 2 cut(s) 157, 813
XceI RCATGY 2 cut(s) 668, 847
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.