Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006180

Physical Location & Seq

Genomic Coordinates Forward (+)

17580645 .. 17581625

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19620.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACCCACAATCTGTTGCTTCTGTCATTAAGGTTGCAACTGGTAACATGGAGCTTGTTGAAGTTGCGACTTGACAAGCTAAGGTTGCTAGTTTCCCAAAATCCTTACCGATCTGATGAGGATGTAGAAATCAATGATCTTATCGAGAAGGTTCAAGCCAGTGATTACGAATTAAGGACTGGGTTGCAGGCTCTTTCAGCTGTGGAGATAAATGGATACTGGAGAATTGTGGATGAGAAGTACATGGGCACAATTTTAAGGATGCTTTTGCACAATTCAGTGTTGGAATCAGATGGCTTTCCTCGCAAACTTGCAGGCCACTGCTTGCATGTTTTTGGTAGTAAGGTGACTGAAGGTGCGACCACAAGTCGTGTCTGGAAGTTGGATGAGAGGAAGGTATGTGTGCATTTTGCAAGAGAAATCTTGAGACATGGGAAGAGGAAGATGAAGAATTTTTCATCTCTACCCTACAATCCTGCAGAACAATTCTCCATCCTTTCTCAAGAGTGTCCAAAATGGGAATGGAAGGATCTAGAGCCCTTTATCAGGGACTTGAATGTGCCGGGACTTTCTGCAGAAGGTTTGCTTCTCAAATACACTAGAAGAACACAACCAACTGCTGATGCAGAACCAGTCTTCAGAGCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dcc1

Protein Analysis

217

Amino Acids

25.05

Weight (kDa)

9.11

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44580 AT2G44580
fragaria_vesca	FvH4_1g25731
malus_domestica	MD02G1227400.v1.1 MD07G1086000.v1.1
prunus_persica	Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1
pyrus_communis	pycom02g19620 pycom07g06900
rosa_chinensis	RchiOBHm_Chr1g0343251
rosa_laevigata	RLG00000028979 RLG00000028982
rosa_multiflora	Rmu_sc0005623.1_g000001
rosa_roxburghii	Rroxscaffold_4G00310840
rosa_rugosa	Rorug01G0166300
rosa_samantha	Rh1AG181700 Rh1BG149900 Rh1CG168500 Rh1DG181800
rosa_wichuraiana	Rw1G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	2 cut(s)	372, 622
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	61, 155, 556
AhdI	GACNNNNNGTC	1 cut(s)	366
AluBI	AGCT	3 cut(s)	54, 79, 200
AluI	AGCT	3 cut(s)	54, 79, 200
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	537
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	628
BccI	CCATC	2 cut(s)	287, 500
BciVI	GTATCC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	3 cut(s)	89, 533, 600
BfmI	CTRYAG	2 cut(s)	477, 573
BfuI	GTATCC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	564
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	252, 613
BmuI	ACTGGG	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	628
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	2 cut(s)	445, 486
BpuMI	CCSGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	5 cut(s)	45, 159, 184, 224, 632
BseGI	GGATG	5 cut(s)	127, 238, 267, 391, 492
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseNI	ACTGG	5 cut(s)	45, 159, 184, 224, 632
BseSI	GKGCMC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	563, 579
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	2 cut(s)	563, 579
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	251, 540
Bsp143I	GATC	3 cut(s)	110, 136, 529
BspANI	GGCC	1 cut(s)	318
BspMAI	CTGCAG	2 cut(s)	481, 577
BspPI	GGATC	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	45, 159, 184, 224, 632
BssMI	GATC	3 cut(s)	110, 136, 529
Bst6I	CTCTTC	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	189, 316, 326
BstDEI	CTNAG	1 cut(s)	80
BstENI	CCTNNNNNAGG	1 cut(s)	544
BstF5I	GGATG	5 cut(s)	127, 238, 267, 391, 492
BstKTI	GATC	3 cut(s)	113, 139, 532
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	110, 136, 529
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 197, 303
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	2 cut(s)	477, 573
BstSLI	GKGCMC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	5 cut(s)	127, 238, 267, 391, 492
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	166, 285, 319
Cac8I	GCNNGC	3 cut(s)	189, 316, 326
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	4 cut(s)	48, 244, 329, 431
CviJI	RGCY	8 cut(s)	54, 79, 158, 191, 200, 297, 318, 538
CviKI_1	RGCY	8 cut(s)	54, 79, 158, 191, 200, 297, 318, 538
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	3 cut(s)	112, 138, 531
DpnII	GATC	3 cut(s)	110, 136, 529
DriI	GACNNNNNGTC	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	431
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	540
Eco57I	CTGAAG	2 cut(s)	372, 622
EcoNI	CCTNNNNNAGG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	540
FaeI	CATG	4 cut(s)	51, 247, 332, 434
FaiI	YATR	5 cut(s)	49, 245, 330, 400, 432
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	2 cut(s)	563, 579
FatI	CATG	4 cut(s)	47, 243, 328, 430
FokI	GGATG	5 cut(s)	134, 245, 274, 398, 479
FriOI	GRGCYC	1 cut(s)	540
FspBI	CTAG	3 cut(s)	89, 533, 600
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	563
Hin1II	CATG	4 cut(s)	51, 247, 332, 434
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	115, 292, 641
Hpy188III	TCNNGA	5 cut(s)	145, 376, 424, 503, 533
HpyAV	CCTTC	5 cut(s)	142, 347, 388, 520, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 197, 303
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	51, 247, 332, 434
Kzo9I	GATC	3 cut(s)	110, 136, 529
LmnI	GCTCC	1 cut(s)	51
LweI	GCATC	2 cut(s)	252, 613
MaeI	CTAG	3 cut(s)	89, 533, 600
MaeIII	GTNAC	2 cut(s)	43, 346
MalI	GATC	3 cut(s)	112, 138, 531
MboI	GATC	3 cut(s)	110, 136, 529
MboII	GAAGA	5 cut(s)	448, 454, 460, 615, 628
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	2 cut(s)	251, 540
MluCI	AATT	6 cut(s)	170, 225, 252, 274, 451, 485
MmeI	TCCRAC	2 cut(s)	264, 363
MnlI	CCTC	4 cut(s)	112, 312, 384, 432
MseI	TTAA	3 cut(s)	29, 173, 257
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	85, 197, 303
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	110, 136, 529
NlaIII	CATG	4 cut(s)	51, 247, 332, 434
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	287
PstI	CTGCAG	2 cut(s)	481, 577
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	29, 173, 257
Sau3AI	GATC	3 cut(s)	110, 136, 529
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	2 cut(s)	251, 540
SfaNI	GCATC	2 cut(s)	252, 613
SfcI	CTRYAG	2 cut(s)	477, 573
SmlI	CTYRAG	2 cut(s)	424, 501
SmoI	CTYRAG	2 cut(s)	424, 501
Sse9I	AATT	6 cut(s)	170, 225, 252, 274, 451, 485
SspMI	CTAG	3 cut(s)	89, 533, 600
StyD4I	CCNGG	1 cut(s)	562
TaqI	TCGA	1 cut(s)	144
TasI	AATT	6 cut(s)	170, 225, 252, 274, 451, 485
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	3 cut(s)	29, 173, 257
Tru9I	TTAA	3 cut(s)	29, 173, 257
TscAI	CASTG	3 cut(s)	166, 285, 326
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	447, 461
TspRI	CASTG	3 cut(s)	166, 285, 326
XagI	CCTNNNNNAGG	1 cut(s)	544
XapI	RAATTY	1 cut(s)	451
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519
XspI	CTAG	3 cut(s)	89, 533, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.